View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3055_low_56 (Length: 250)
Name: NF3055_low_56
Description: NF3055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3055_low_56 |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 45066314 - 45066078
Alignment:
| Q |
1 |
aatgtgtaatatattcaggaagaagcttcagattgtagattatgccggcaacatgactttgagaataacattagggtggctgcattgcctacccaaacag |
100 |
Q |
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| T |
45066314 |
aatgtgtaatatattcaggaagaagcttcagattgtagattatgccggcaacatgactttgagaataacattagggtggctgcattgcctacccaaacag |
45066215 |
T |
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| Q |
101 |
ttacttcaagtttagctccatagtagcatttttctaacttgtcatttcatatttggaccatgaatttattaggtatgctgatcgcttaaatggctactgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45066214 |
ttacttcaagtttagctccatagtagcatttttctaacttgtcatttcatatttggaccatgaatttattaggtatgctgatcgcttaaatggctactgg |
45066115 |
T |
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| Q |
201 |
acggggtattttacaagcaggccagccctcacaggtt |
237 |
Q |
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| T |
45066114 |
acggggtattttacaagcaggccagccctcaaaggtt |
45066078 |
T |
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