View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3055_low_58 (Length: 249)
Name: NF3055_low_58
Description: NF3055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3055_low_58 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 44155632 - 44155869
Alignment:
| Q |
1 |
atcagtgttctcactactctcaccatccacattatcctctaagaactttaaattgtgatcaggggttgactatctccaatatgtcttcatttttgcaata |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||| |||||| |
|
|
| T |
44155632 |
atcagtgttctcactactctcaccatccacattatcctctaagaactttaaatagtgatcaggggttgactatctccaatacgtctccattttggcaata |
44155731 |
T |
|
| Q |
101 |
ccaatgtccttattttgcatttgataaccagtctatacagtttatactcaagatttggaatgagacctgaatcaccattttttggcatcttatttgttca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44155732 |
ccaatgtccttattttgcatttgataaccagactatacagtttatactcaagatttggaatgagacctgaatcaccattttttggcatcttatttgttca |
44155831 |
T |
|
| Q |
201 |
atgatttatcttgacaaattcattgcaacgtgccctat |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
44155832 |
atgatttatcttgacaaattcattgcaacgtgtcctat |
44155869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 5 - 165
Target Start/End: Original strand, 44214711 - 44214871
Alignment:
| Q |
5 |
gtgttctcactactctcaccatccacattatcctctaagaactttaaattgtgatcaggggttgactatctccaatatgtcttcatttttgcaataccaa |
104 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||||||| | || | ||||||||| |||| ||||| |||| ||| || ||||||||||| || |
|
|
| T |
44214711 |
gtgttctcaccactctcaccatcaacattatcctctaagaaatctagactgtgatcagatattgatagtctcctatatttctccaattttgcaatactaa |
44214810 |
T |
|
| Q |
105 |
tgtccttattttgcatttgataaccagtctatacagtttatactcaagatttggaatgaga |
165 |
Q |
| |
|
||||| ||||||| ||||| |||| ||||||||||||| |||||||||||| ||||||| |
|
|
| T |
44214811 |
tgtccatattttgaatttgttaactagtctatacagttcgtactcaagattttcaatgaga |
44214871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 44146250 - 44146202
Alignment:
| Q |
190 |
ttatttgttcaatgatttatcttgacaaattcattgcaacgtgccctat |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44146250 |
ttatttgttcaatgatttatcttgacaaattcattgcaacgtgccctat |
44146202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 40894192 - 40894153
Alignment:
| Q |
1 |
atcagtgttctcactactctcaccatccacattatcctct |
40 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40894192 |
atcagtgttctcactactctcaccatccacattatcctct |
40894153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 229
Target Start/End: Complemental strand, 40894099 - 40894069
Alignment:
| Q |
199 |
caatgatttatcttgacaaattcattgcaac |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
40894099 |
caatgatttatcttgacaaattcattgcaac |
40894069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University