View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3055_low_59 (Length: 249)
Name: NF3055_low_59
Description: NF3055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3055_low_59 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 17 - 198
Target Start/End: Complemental strand, 48532150 - 48531969
Alignment:
| Q |
17 |
caacggtatggcctgccattcaattagcaagtatggcctgccatttaaaatcatatcttactgccgttaataatggcaatggtaaagtttgtttggacaa |
116 |
Q |
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| T |
48532150 |
caacggtatggcctgccattcaattagcgagtatggcctgccatttaaaatcatatcttactgcccttaataatggcaatggtaaagtttgtttggtcaa |
48532051 |
T |
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| Q |
117 |
ttccatattcaaatggtgtggagtacaaaaaatatatatgtcaatgtttaaaatactttctatttgataaattactttgcca |
198 |
Q |
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| T |
48532050 |
ttccatattcaaatggtgtggagtacaaaaaatatatatgtcaatgtttaaaatactttctatttgataaattactttgcca |
48531969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 37 - 243
Target Start/End: Complemental strand, 48529266 - 48529060
Alignment:
| Q |
37 |
caattagcaagtatggcctgccatttaaaatcatatcttactgccgttaataatggcaatggtaaagtttgtttggacaattccatattcaaatggtgtg |
136 |
Q |
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|||||||| ||||||||||||||||||| |||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
48529266 |
caattagcgagtatggcctgccatttaatttcatatcttactgctgttaataatgacaatgataaagtttgtttggacaattccatattcaaatactgtg |
48529167 |
T |
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| Q |
137 |
gagtacaaaaaatatatatgtcaatgtttaaaatactttctatttgataaattactttgccaataacagaaacatgtttgacttgaaaaaggactgcaaa |
236 |
Q |
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| T |
48529166 |
gagtacaaaaaatatatatgtcaatgtttgaaatactttctatttgataaattactttgccaataacaaaaacatgtttgacttgaaaaagggctgcaaa |
48529067 |
T |
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| Q |
237 |
ttatgtt |
243 |
Q |
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||||||| |
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| T |
48529066 |
ttatgtt |
48529060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 206 - 249
Target Start/End: Complemental strand, 48531858 - 48531815
Alignment:
| Q |
206 |
aaacatgtttgacttgaaaaaggactgcaaattatgttcattct |
249 |
Q |
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| T |
48531858 |
aaacatgtttgacttgaaaaaggactgcaaattatgttcattct |
48531815 |
T |
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