View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3055_low_6 (Length: 775)

Name: NF3055_low_6
Description: NF3055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3055_low_6
NF3055_low_6
[»] chr3 (13 HSPs)
chr3 (1-756)||(53493326-53494082)
chr3 (44-263)||(16072530-16072748)
chr3 (486-563)||(16072927-16073004)
chr3 (357-455)||(16072813-16072911)
chr3 (516-582)||(402458-402524)
chr3 (517-584)||(9832672-9832739)
chr3 (521-584)||(18405752-18405815)
chr3 (683-725)||(16073136-16073178)
chr3 (514-584)||(20170628-20170698)
chr3 (513-575)||(25447158-25447220)
chr3 (535-621)||(31365123-31365208)
chr3 (518-584)||(39980815-39980881)
chr3 (519-584)||(43046751-43046815)
[»] chr8 (11 HSPs)
chr8 (516-589)||(38602408-38602481)
chr8 (516-630)||(30251370-30251483)
chr8 (535-584)||(1058012-1058061)
chr8 (508-584)||(43717842-43717918)
chr8 (516-590)||(12496988-12497062)
chr8 (536-630)||(32840922-32841015)
chr8 (516-586)||(35534529-35534599)
chr8 (679-715)||(14280490-14280526)
chr8 (521-571)||(12010979-12011029)
chr8 (518-584)||(36963272-36963338)
chr8 (512-546)||(43043792-43043826)
[»] chr7 (9 HSPs)
chr7 (521-584)||(18765370-18765433)
chr7 (516-630)||(5947282-5947395)
chr7 (511-584)||(36517663-36517736)
chr7 (516-584)||(4970708-4970776)
chr7 (516-584)||(18962499-18962567)
chr7 (509-581)||(19302472-19302544)
chr7 (520-584)||(34464141-34464205)
chr7 (680-727)||(4970878-4970925)
chr7 (519-590)||(35056755-35056826)
[»] chr6 (4 HSPs)
chr6 (511-630)||(848030-848147)
chr6 (519-584)||(10645304-10645369)
chr6 (526-630)||(2455032-2455132)
chr6 (516-573)||(35069528-35069585)
[»] chr2 (9 HSPs)
chr2 (519-584)||(30331837-30331902)
chr2 (517-584)||(26143559-26143624)
chr2 (509-584)||(15305760-15305835)
chr2 (518-584)||(28677577-28677644)
chr2 (515-584)||(27317465-27317534)
chr2 (516-586)||(4607009-4607079)
chr2 (522-584)||(31561664-31561726)
chr2 (518-563)||(18179056-18179101)
chr2 (512-561)||(39659421-39659470)
[»] chr1 (7 HSPs)
chr1 (519-584)||(50644174-50644239)
chr1 (518-584)||(33204312-33204378)
chr1 (516-584)||(2295182-2295250)
chr1 (522-577)||(15784410-15784465)
chr1 (535-590)||(29904831-29904886)
chr1 (518-584)||(3233933-3233999)
chr1 (511-581)||(36872817-36872887)
[»] chr4 (10 HSPs)
chr4 (516-584)||(21731572-21731640)
chr4 (516-584)||(29388700-29388768)
chr4 (518-590)||(8705021-8705093)
chr4 (520-580)||(15173223-15173283)
chr4 (516-584)||(54426129-54426197)
chr4 (518-581)||(27043748-27043811)
chr4 (525-584)||(40174643-40174702)
chr4 (516-583)||(53294030-53294097)
chr4 (518-584)||(49940085-49940151)
chr4 (516-581)||(39691065-39691130)
[»] chr5 (9 HSPs)
chr5 (519-584)||(34736446-34736511)
chr5 (516-584)||(15246919-15246987)
chr5 (520-583)||(9107177-9107240)
chr5 (516-630)||(6521118-6521232)
chr5 (595-629)||(34669724-34669758)
chr5 (535-584)||(12425659-12425708)
chr5 (535-584)||(15015929-15015978)
chr5 (519-584)||(39594893-39594958)
chr5 (516-577)||(40426858-40426919)


Alignment Details
Target: chr3 (Bit Score: 708; Significance: 0; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 708; E-Value: 0
Query Start/End: Original strand, 1 - 756
Target Start/End: Original strand, 53493326 - 53494082
Alignment:
Q  1 tcgtcaaagatatagagaacaaaatataaaatattttctaggggagaacaataaatattgtattgcttagtttcctgaagctatagtacgcgagacacta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53493326 tcgtcaaagatatagagaacaaaatataaaatattttctaggggagaacaataaatattgtattgcttagtttcctgaagctatagtacgcgagacacta 53493425  T
Q  101 aataaaatcatataaatgatcactcttttctcaattttatcaagaataataataaaagtgtattaagtctgactatctatacttggatttctaattctct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53493426 aataaaatcatataaatgatcactcttttctcaattttatcaagaataataataaaagtgtattaagtctgactatctatacttggatttctaattctct 53493525  T
Q  201 taatattgcagagtttgaattagaagaccaaagaacataattcttgctgttggaatgacaaattacgttcaactctccattcaaaaattaagtgtagtga 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  53493526 taatattgcagagtttgaattagaagaccaaagaacataattcttgctgttggaatgacaaattacgttcaactgtccattcacaaattaagtgtagtga 53493625  T
Q  301 ttgttctatcttttcatctcacccacttaaactacctggatatgtgattatgattgatggatataatttatgtacatcaaacgacaatatgctatgacat 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53493626 ttgttctatcttttcatctcacccacttaaactacctggatatgtgattatgattgatggatataatttatgtacatcaaacgacaatatgctatgacat 53493725  T
Q  401 ggtagtgcacatcttgttctctaaaagtaattaatcttgcatggtgagaaatttgcaagactgtttggattgattgtaacaaaagcaaaagggacatgta 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53493726 ggtagtgcacatcttgttctctaaaagtaattaatcttgcatggtgagaaatttgcaagactgtttggattgattgtaacaaaagcaaaagggacatgta 53493825  T
Q  501 cattgcacacttagagcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaacttgtaaaaccccactaat 600  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  53493826 cattgcacacttagagcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagattgtttgggagaacttgtaaaaccccactaat 53493925  T
Q  601 gacatttttcataagctttttacagcttatcttatgagttatatgaatgaaaacaactttagcatatat-nnnnnnntgtaatttaattttaccttttgc 699  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||| |    
T  53493926 gacatttttcataagctttttacagcttatcttatgagttatatgaatgaaaacaactttagcatatataaaaacaatgtaatttaattttaccttttac 53494025  T
Q  700 tatagaaataggttatgtaagattatacgcgttaataataagatatttatccgaata 756  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53494026 tataaaaataggttatgtaagattatacgcgttaataataagatatttatccgaata 53494082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 44 - 263
Target Start/End: Original strand, 16072530 - 16072748
Alignment:
Q  44 gagaacaataaatattgtattgcttagtttcctgaagctatagtacgcgagacactaaataaaatcatataaatgatcactcttttctcaattttatcaa 143  Q
    |||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||  |    
T  16072530 gagaacaataaataatgtattgcttagtttcctgaagctatagtacatgagacactaaataaaatcatataaatgatcactcttttctcaattttattga 16072629  T
Q  144 gaataataataaaagtgtatt--aagtctgactatctatacttggatttctaattctcttaatattgcagagtttgaattagaagaccaaagaacataat 241  Q
    |   |||| || | |||||||    |||||||||||||||||||||||||||| ||||| | | ||||| ||||| ||| ||||||||||||| || |||    
T  16072630 g---aatagtagaggtgtatttgttgtctgactatctatacttggatttctaactctctcagtgttgcaaagtttaaatcagaagaccaaagatcaaaat 16072726  T
Q  242 tcttgctgttggaatgacaaat 263  Q
    |||||  ||||||| |||||||    
T  16072727 tcttgtggttggaaagacaaat 16072748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 486 - 563
Target Start/End: Original strand, 16072927 - 16073004
Alignment:
Q  486 caaaagggacatgtacattgcacacttagagcctgtttggattgatttgtttgagcttatctaattacataagttttg 563  Q
    ||||||||| |||||||||||||||||||  |||||||||||||| || |||||||||||||||| ||||||||||||    
T  16072927 caaaagggatatgtacattgcacacttaggacctgtttggattgacttatttgagcttatctaatgacataagttttg 16073004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 357 - 455
Target Start/End: Original strand, 16072813 - 16072911
Alignment:
Q  357 atggatataatttatgtacatcaaacgacaatatgctatgacatggtagtgcacatcttgttctctaaaagtaattaatcttgcatggtgagaaatttg 455  Q
    ||||||||||| ||   ||| ||||||||  ||||||||||||||||||||||| |  | |||  ||||||||||| ||||||||||||||||| ||||    
T  16072813 atggatataatctaaccacaacaaacgacggtatgctatgacatggtagtgcacgttattttccttaaaagtaattgatcttgcatggtgagaagtttg 16072911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 516 - 582
Target Start/End: Original strand, 402458 - 402524
Alignment:
Q  516 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaac 582  Q
    |||||||||| ||||  | |||||| ||||| | | |||||||||||||||||||||||||||||||    
T  402458 gcctgtttgggttgacctatttgagtttatcaactaacataagttttgcaagactgtttgggagaac 402524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 517 - 584
Target Start/End: Original strand, 9832672 - 9832739
Alignment:
Q  517 cctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 584  Q
    ||||||| |||||| || ||||||||||| || | ||||||||||||  | |||||||||||||||||    
T  9832672 cctgtttagattgacttatttgagcttatttattgacataagttttgtcaaactgtttgggagaactt 9832739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 521 - 584
Target Start/End: Original strand, 18405752 - 18405815
Alignment:
Q  521 tttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 584  Q
    ||||||||| ||| |||||||||||||| | ||||||||||||  ||||||||||  |||||||    
T  18405752 tttggattggtttatttgagcttatctactgacataagttttgtgagactgtttgcaagaactt 18405815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 683 - 725
Target Start/End: Original strand, 16073136 - 16073178
Alignment:
Q  683 ttaattttaccttttgctatagaaataggttatgtaagattat 725  Q
    ||||||||| |||||||||||||||||| ||||| ||||||||    
T  16073136 ttaattttaacttttgctatagaaatagcttatgcaagattat 16073178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 514 - 584
Target Start/End: Original strand, 20170628 - 20170698
Alignment:
Q  514 gagcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 584  Q
    ||||||||||||||||  || |||||||||||||| | |||||||||| |  ||||||||||  |||||||    
T  20170628 gagcctgtttggattggcttatttgagcttatctagtgacataagtttagtgagactgtttgttagaactt 20170698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 513 - 575
Target Start/End: Original strand, 25447158 - 25447220
Alignment:
Q  513 agagcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttg 575  Q
    |||| ||||||||||||| || |||||| ||||||| | ||||||||||||  ||||||||||    
T  25447158 agagtctgtttggattgacttatttgagtttatctactgacataagttttgtgagactgtttg 25447220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 535 - 621
Target Start/End: Original strand, 31365123 - 31365208
Alignment:
Q  535 tttgagcttatctaattacataagttttgcaagactgtttgggagaacttgtaaaaccccactaatgacatttttcataagcttttt 621  Q
    |||||||||||||| |  |||||||||||  ||||||||||||||||||| | |||  |  || |||||| ||||||||||||||||    
T  31365123 tttgagcttatctattggcataagttttgtgagactgtttgggagaacttatgaaa-gcagcttatgacaattttcataagcttttt 31365208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 518 - 584
Target Start/End: Complemental strand, 39980881 - 39980815
Alignment:
Q  518 ctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 584  Q
    ||||||||||||  ||||||||||||||||| |  |||||||||||  |||||||||  ||||||||    
T  39980881 ctgtttggattggcttgtttgagcttatctactagcataagttttgtgagactgtttaagagaactt 39980815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 519 - 584
Target Start/End: Complemental strand, 43046815 - 43046751
Alignment:
Q  519 tgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 584  Q
    ||||| |||||| || ||||| |||||||| ||||||| ||||||  |||||||||||||||||||    
T  43046815 tgtttagattgacttatttgaacttatcta-ttacatatgttttgtgagactgtttgggagaactt 43046751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 516 - 589
Target Start/End: Complemental strand, 38602481 - 38602408
Alignment:
Q  516 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaacttgtaaa 589  Q
    ||||||||||||||| || |||||||||||||| | ||||||||||||  || |||||||||||||||| ||||    
T  38602481 gcctgtttggattgacttatttgagcttatctactgacataagttttgtgaggctgtttgggagaacttataaa 38602408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 516 - 630
Target Start/End: Original strand, 30251370 - 30251483
Alignment:
Q  516 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaacttgtaaaaccccactaatgacatttttcataag 615  Q
    ||||||||||||||  || |||||||||||||| | |||||||||| |  |||||||||||||||||||   |||  |  || ||  |||||||||||||    
T  30251370 gcctgtttggattggcttatttgagcttatctactgacataagtttcgtgagactgtttgggagaacttacgaaa-acagcttattgcatttttcataag 30251468  T
Q  616 ctttttacagcttat 630  Q
    |||||||||||||||    
T  30251469 ctttttacagcttat 30251483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 535 - 584
Target Start/End: Original strand, 1058012 - 1058061
Alignment:
Q  535 tttgagcttatctaattacataagttttgcaagactgtttgggagaactt 584  Q
    |||||||||||||| ||||||||||||||  |||||||||||||||||||    
T  1058012 tttgagcttatctacttacataagttttgtgagactgtttgggagaactt 1058061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 508 - 584
Target Start/End: Original strand, 43717842 - 43717918
Alignment:
Q  508 cacttagagcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 584  Q
    ||||||| |||| |||||||||  || |||||||||||||| | ||||||||||||  ||||| |||||||||||||    
T  43717842 cacttagggcctatttggattggcttatttgagcttatctattgacataagttttgtgagactatttgggagaactt 43717918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 516 - 590
Target Start/End: Original strand, 12496988 - 12497062
Alignment:
Q  516 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaacttgtaaaa 590  Q
    |||| ||||||||||||| |||||||||||||  |  |||||||||||  |||||||||| |||||||| |||||    
T  12496988 gcctatttggattgatttatttgagcttatctcctggcataagttttgtgagactgtttgagagaacttctaaaa 12497062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 536 - 630
Target Start/End: Original strand, 32840922 - 32841015
Alignment:
Q  536 ttgagcttatctaattacataagttttgcaagactgtttgggagaacttgtaaaaccccactaatgacatttttcataagctttttacagcttat 630  Q
    ||||||||||||| | ||| ||||||||| ||||||||||||||||||| | |||  | ||| |||||||| |||||||| | ||| ||||||||    
T  32840922 ttgagcttatctactcacacaagttttgcgagactgtttgggagaacttatgaaa-acaacttatgacattgttcataagttgttttcagcttat 32841015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 516 - 586
Target Start/End: Original strand, 35534529 - 35534599
Alignment:
Q  516 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaacttgt 586  Q
    |||||||| || ||| || |||||||||||||| | ||||||||||||  |||||||||| ||||||||||    
T  35534529 gcctgtttagaatgacttatttgagcttatctactaacataagttttgtgagactgtttgagagaacttgt 35534599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 679 - 715
Target Start/End: Original strand, 14280490 - 14280526
Alignment:
Q  679 taatttaattttaccttttgctatagaaataggttat 715  Q
    ||||||||||||| |||||||||||||||||||||||    
T  14280490 taatttaattttatcttttgctatagaaataggttat 14280526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 521 - 571
Target Start/End: Complemental strand, 12011029 - 12010979
Alignment:
Q  521 tttggattgatttgtttgagcttatctaattacataagttttgcaagactg 571  Q
    |||||||||| || |||||||||||||||||||||| ||||| | ||||||    
T  12011029 tttggattgacttatttgagcttatctaattacatatgttttacgagactg 12010979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 518 - 584
Target Start/End: Original strand, 36963272 - 36963338
Alignment:
Q  518 ctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 584  Q
    ||||||||||||  || |||||||| ||||| |  |||||||||||  |||||||||||||||||||    
T  36963272 ctgtttggattggcttatttgagctaatctactggcataagttttgtgagactgtttgggagaactt 36963338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 512 - 546
Target Start/End: Complemental strand, 43043826 - 43043792
Alignment:
Q  512 tagagcctgtttggattgatttgtttgagcttatc 546  Q
    ||||||||||||||||||| |||||||||||||||    
T  43043826 tagagcctgtttggattgacttgtttgagcttatc 43043792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 521 - 584
Target Start/End: Complemental strand, 18765433 - 18765370
Alignment:
Q  521 tttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 584  Q
    ||||||||| ||| |||||||||||||| | ||||||||||||  |||||||||||||||||||    
T  18765433 tttggattgctttatttgagcttatctattgacataagttttgtgagactgtttgggagaactt 18765370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 516 - 630
Target Start/End: Complemental strand, 5947395 - 5947282
Alignment:
Q  516 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaacttgtaaaaccccactaatgacatttttcataag 615  Q
    ||||||||||||||  || |||||||||||||| |   |||||||||   ||||||||||| ||||||| | |||||   || ||||||||||||||| |    
T  5947395 gcctgtttggattggcttatttgagcttatctattggtataagttttatgagactgtttggaagaacttttgaaaccag-cttatgacatttttcatatg 5947297  T
Q  616 ctttttacagcttat 630  Q
    |||||||||||||||    
T  5947296 ctttttacagcttat 5947282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 511 - 584
Target Start/End: Complemental strand, 36517736 - 36517663
Alignment:
Q  511 ttagagcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 584  Q
    |||| ||||||||||||| |||| |||||||||| ||| |  ||||||||||  ||||||||||||||||||||    
T  36517736 ttagggcctgtttggattcatttatttgagcttagctactggcataagttttctaagactgtttgggagaactt 36517663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 516 - 584
Target Start/End: Original strand, 4970708 - 4970776
Alignment:
Q  516 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 584  Q
    ||||||||||||||| || |||||||||||||  | |||||||| |||  |||||||||||||||||||    
T  4970708 gcctgtttggattgacttatttgagcttatctcgtgacataagtcttgtgagactgtttgggagaactt 4970776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 516 - 584
Target Start/End: Original strand, 18962499 - 18962567
Alignment:
Q  516 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 584  Q
    ||||||||||||||| || || || |||||||| | ||||||||||||  ||||||||| |||||||||    
T  18962499 gcctgtttggattgagttattcgatcttatctactgacataagttttgttagactgttttggagaactt 18962567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 509 - 581
Target Start/End: Original strand, 19302472 - 19302544
Alignment:
Q  509 acttagagcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaa 581  Q
    ||||||| |||||||| ||||| || |||||||||||||| | ||||||||||||  ||| | ||||||||||    
T  19302472 acttagaacctgtttgaattgacttatttgagcttatctactgacataagttttgtgagaatatttgggagaa 19302544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 520 - 584
Target Start/End: Original strand, 34464141 - 34464205
Alignment:
Q  520 gtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 584  Q
    |||||||||||||| |||||| ||||||| | |||||| |||| ||||||| |||||||| ||||    
T  34464141 gtttggattgatttatttgagtttatctattgacataaattttacaagactttttgggaggactt 34464205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 680 - 727
Target Start/End: Original strand, 4970878 - 4970925
Alignment:
Q  680 aatttaattttaccttttgctatagaaataggttatgtaagattatac 727  Q
    ||||| |||||| |||||||||||||||||| ||||||||| ||||||    
T  4970878 aattttattttatcttttgctatagaaatagcttatgtaagcttatac 4970925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 519 - 590
Target Start/End: Complemental strand, 35056826 - 35056755
Alignment:
Q  519 tgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaacttgtaaaa 590  Q
    |||||||||||| || | |||||||||||| | ||||| |||| | || ||||||||||||||||| |||||    
T  35056826 tgtttggattgagttttctgagcttatctactaacatacgtttagtaaaactgtttgggagaacttataaaa 35056755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 511 - 630
Target Start/End: Complemental strand, 848147 - 848030
Alignment:
Q  511 ttagagcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaacttgtaaaaccccactaatgacatttttc 610  Q
    |||| ||||||||||||||  || |||||||||||||| |  |||||||||||  ||||||||||| ||||||| |||||  |  || ||||||||||||    
T  848147 ttagggcctgtttggattgccttatttgagcttatcta-tagcataagttttgtgagactgtttggaagaacttataaaa-actgcttatgacatttttc 848050  T
Q  611 ataagctttttacagcttat 630  Q
     |||||||||| ||||||||    
T  848049 ttaagcttttttcagcttat 848030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 519 - 584
Target Start/End: Original strand, 10645304 - 10645369
Alignment:
Q  519 tgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 584  Q
    |||||||||||  |  |||||| ||||||||| |||||||||||| ||||||||||||||||||||    
T  10645304 tgtttggattggctaatttgaggttatctaatgacataagttttgtaagactgtttgggagaactt 10645369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 526 - 630
Target Start/End: Complemental strand, 2455132 - 2455032
Alignment:
Q  526 attgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaacttgtaaaaccccactaatgacatttttcataagctttttacag 625  Q
    |||| ||| ||||| |||||||| | ||||||||||||  ||||||||||||||||||| | |||    ||| |||||||| ||||||| || ||| |||    
T  2455132 attggtttatttgaacttatctactaacataagttttgtgagactgtttgggagaacttctgaaa----acttatgacattgttcataacctgttttcag 2455037  T
Q  626 cttat 630  Q
    |||||    
T  2455036 cttat 2455032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 516 - 573
Target Start/End: Original strand, 35069528 - 35069585
Alignment:
Q  516 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtt 573  Q
    ||||||||| ||||  || |||||||||||||| | |||||||||||| |||||||||    
T  35069528 gcctgtttgtattggcttatttgagcttatctactgacataagttttgtaagactgtt 35069585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000005; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 519 - 584
Target Start/End: Complemental strand, 30331902 - 30331837
Alignment:
Q  519 tgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 584  Q
    |||||||||||| || ||| |||||||||| | ||||||||||||  |||||||||||||||||||    
T  30331902 tgtttggattgacttatttcagcttatctactgacataagttttgtgagactgtttgggagaactt 30331837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 517 - 584
Target Start/End: Original strand, 26143559 - 26143624
Alignment:
Q  517 cctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 584  Q
    |||||||||||||  ||||||||||||||||| | |||||| |||||  |||||||||||||||||||    
T  26143559 cctgtttggattggcttgtttgagcttatctactgacataaattttg--agactgtttgggagaactt 26143624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 509 - 584
Target Start/End: Complemental strand, 15305835 - 15305760
Alignment:
Q  509 acttagagcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 584  Q
    |||||| ||||||||||||||  || |||||||||||||| | ||||||||||||  | ||||||||| |||||||    
T  15305835 acttagggcctgtttggattggcttatttgagcttatctattgacataagttttgtgaaactgtttggtagaactt 15305760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 518 - 584
Target Start/End: Original strand, 28677577 - 28677644
Alignment:
Q  518 ctgtttggattgatttgtttgagcttatctaattacataagttttgc-aagactgtttgggagaactt 584  Q
    |||||||||||||||| ||||||||||| || || |||||||  ||| ||||||||||||||||||||    
T  28677577 ctgtttggattgatttttttgagcttatttacttgcataagtactgctaagactgtttgggagaactt 28677644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 515 - 584
Target Start/End: Complemental strand, 27317534 - 27317465
Alignment:
Q  515 agcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 584  Q
    |||||||||||||||| || ||||||||||||||   |||||||||||   |||||||||| ||||||||    
T  27317534 agcctgtttggattgacttatttgagcttatctaccgacataagttttatgagactgtttgagagaactt 27317465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 516 - 586
Target Start/End: Complemental strand, 4607079 - 4607009
Alignment:
Q  516 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaacttgt 586  Q
    ||||||||||||||  || ||||||||||||||   | ||||||||||  ||||| |||||||||||||||    
T  4607079 gcctgtttggattggcttatttgagcttatctaccaatataagttttgtgagactatttgggagaacttgt 4607009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 522 - 584
Target Start/End: Original strand, 31561664 - 31561726
Alignment:
Q  522 ttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 584  Q
    ||||||||| || |||||| ||||||| | |||||||||||| || ||||||||||| |||||    
T  31561664 ttggattgacttatttgagattatctactaacataagttttgtaaaactgtttgggaaaactt 31561726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 518 - 563
Target Start/End: Complemental strand, 18179101 - 18179056
Alignment:
Q  518 ctgtttggattgatttgtttgagcttatctaattacataagttttg 563  Q
    ||||||||||||| || |||||||||||||| | ||||||||||||    
T  18179101 ctgtttggattgacttatttgagcttatctactaacataagttttg 18179056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 512 - 561
Target Start/End: Original strand, 39659421 - 39659470
Alignment:
Q  512 tagagcctgtttggattgatttgtttgagcttatctaattacataagttt 561  Q
    ||||||||||||||||||  ||| ||||||||||||| | ||||||||||    
T  39659421 tagagcctgtttggattggcttgcttgagcttatctactgacataagttt 39659470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000005; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 519 - 584
Target Start/End: Original strand, 50644174 - 50644239
Alignment:
Q  519 tgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 584  Q
    |||||||||||| || |||||||||||||| | ||||| ||||||  |||||||||||||||||||    
T  50644174 tgtttggattgacttatttgagcttatctactaacatatgttttgtgagactgtttgggagaactt 50644239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 518 - 584
Target Start/End: Original strand, 33204312 - 33204378
Alignment:
Q  518 ctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 584  Q
    |||||| ||| || || |||||||||||||| | ||||||||||||  |||||||||||||||||||    
T  33204312 ctgtttagatcgacttatttgagcttatctactgacataagttttgtgagactgtttgggagaactt 33204378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 516 - 584
Target Start/End: Complemental strand, 2295250 - 2295182
Alignment:
Q  516 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 584  Q
    ||||||||| ||||  || |||||||||||||| |  |||||||||||  |||||||||||||||||||    
T  2295250 gcctgtttgaattggcttatttgagcttatctactggcataagttttgtgagactgtttgggagaactt 2295182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 522 - 577
Target Start/End: Complemental strand, 15784465 - 15784410
Alignment:
Q  522 ttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttggg 577  Q
    |||||| || || |||||||||||||| | |||||||||||| |||||||||||||    
T  15784465 ttggatcgacttatttgagcttatctactaacataagttttgtaagactgtttggg 15784410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 535 - 590
Target Start/End: Complemental strand, 29904886 - 29904831
Alignment:
Q  535 tttgagcttatctaattacataagttttgcaagactgtttgggagaacttgtaaaa 590  Q
    |||||||||||||| || |||||||||||  |||||||||| |||||||| |||||    
T  29904886 tttgagcttatctacttgcataagttttgtgagactgtttgagagaacttataaaa 29904831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 518 - 584
Target Start/End: Original strand, 3233933 - 3233999
Alignment:
Q  518 ctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 584  Q
    ||||||||||||| || |||||||||||||| |  | |||||||||  |||||||| ||||||||||    
T  3233933 ctgtttggattgacttatttgagcttatctagtgccgtaagttttgtgagactgttagggagaactt 3233999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 511 - 581
Target Start/End: Complemental strand, 36872887 - 36872817
Alignment:
Q  511 ttagagcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaa 581  Q
    |||| ||||||||||||||  || ||| |||||| ||||  ||||||||||||| ||||||||| ||||||    
T  36872887 ttagggcctgtttggattggcttatttaagcttaactaacaacataagttttgcgagactgttttggagaa 36872817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 516 - 584
Target Start/End: Original strand, 21731572 - 21731640
Alignment:
Q  516 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 584  Q
    |||||||||||||| ||| ||||||| |||||| | ||||||||||||  ||| |||||||||||||||    
T  21731572 gcctgtttggattggtttatttgagcatatctactgacataagttttgtgagattgtttgggagaactt 21731640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 516 - 584
Target Start/End: Complemental strand, 29388768 - 29388700
Alignment:
Q  516 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 584  Q
    |||||||||| |||| || ||||| |||||||| | |||||||||||| |||| |||||||||||||||    
T  29388768 gcctgtttgggttgacttatttgaccttatctactaacataagttttgtaagattgtttgggagaactt 29388700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 518 - 590
Target Start/End: Complemental strand, 8705093 - 8705021
Alignment:
Q  518 ctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaacttgtaaaa 590  Q
    ||||||||||||  |  |||||||||||||| | ||||||||||||  |||||| |||||||||||| |||||    
T  8705093 ctgtttggattggctcatttgagcttatctattgacataagttttgtgagactgattgggagaacttataaaa 8705021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 520 - 580
Target Start/End: Original strand, 15173223 - 15173283
Alignment:
Q  520 gtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggaga 580  Q
    ||||||||||| || ||||| |||||||| | ||||||||||||  |||||||||||||||    
T  15173223 gtttggattgacttatttgaacttatctactgacataagttttgtgagactgtttgggaga 15173283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 516 - 584
Target Start/End: Complemental strand, 54426197 - 54426129
Alignment:
Q  516 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 584  Q
    ||||||||||||||  || |||||||||||||| |  |||||||||||  |||||| ||||||||||||    
T  54426197 gcctgtttggattggcttatttgagcttatctactggcataagttttgtgagactgcttgggagaactt 54426129  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 518 - 581
Target Start/End: Original strand, 27043748 - 27043811
Alignment:
Q  518 ctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaa 581  Q
    ||||||||||||| || |||||||||||||| | ||||||||||||  | ||||||||| ||||    
T  27043748 ctgtttggattgacttatttgagcttatctactgacataagttttgtgaaactgtttggaagaa 27043811  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 525 - 584
Target Start/End: Complemental strand, 40174702 - 40174643
Alignment:
Q  525 gattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 584  Q
    ||||||||| |||||| ||||||| | ||||||||||||  ||||||||||||| |||||    
T  40174702 gattgatttatttgagtttatctactaacataagttttgtgagactgtttgggataactt 40174643  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 516 - 583
Target Start/End: Original strand, 53294030 - 53294097
Alignment:
Q  516 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaact 583  Q
    ||||||||||||||| |  |||| ||||||||| | |||| ||||||| |||||||||||||| ||||    
T  53294030 gcctgtttggattgactaatttgtgcttatctactgacatgagttttgtaagactgtttgggaaaact 53294097  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 518 - 584
Target Start/End: Original strand, 49940085 - 49940151
Alignment:
Q  518 ctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 584  Q
    ||||||||||||| || |||||||||| ||  | ||||||||||||  |||||||||| ||||||||    
T  49940085 ctgtttggattgacttatttgagcttacctgctaacataagttttgtgagactgtttgagagaactt 49940151  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 516 - 581
Target Start/End: Original strand, 39691065 - 39691130
Alignment:
Q  516 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaa 581  Q
    ||||||||| ||||| || |||||||||||||| |  |||||||||||  |||||||||| |||||    
T  39691065 gcctgtttgaattgacttatttgagcttatctactagcataagttttgtgagactgtttgagagaa 39691130  T

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Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 519 - 584
Target Start/End: Original strand, 34736446 - 34736511
Alignment:
Q  519 tgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 584  Q
    |||||||||||| || |||||||||||||  | ||||||||||||  |||| ||||||||||||||    
T  34736446 tgtttggattgacttatttgagcttatctggtgacataagttttgtgagacagtttgggagaactt 34736511  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 516 - 584
Target Start/End: Complemental strand, 15246987 - 15246919
Alignment:
Q  516 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 584  Q
    |||||||||||||  ||| |||||||||||||| | |||||||||||   ||| |||||||||||||||    
T  15246987 gcctgtttggatttgtttatttgagcttatctactgacataagttttattagaatgtttgggagaactt 15246919  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 520 - 583
Target Start/End: Complemental strand, 9107240 - 9107177
Alignment:
Q  520 gtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaact 583  Q
    ||||||||||| || |||||| ||||||| | ||||||||||||  ||| ||||||||||||||    
T  9107240 gtttggattgacttatttgagtttatctagtgacataagttttgtgagaatgtttgggagaact 9107177  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 516 - 630
Target Start/End: Complemental strand, 6521232 - 6521118
Alignment:
Q  516 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaacttgtaaaaccccactaatgacatttttcataag 615  Q
    ||||||||||||||| || || ||||| | ||| | ||||| ||||||  ||| ||||||||||||||| | ||| |  ||| |||||| |||||| |||    
T  6521232 gcctgtttggattgacttattagagctgaactactgacatatgttttgtgagattgtttgggagaacttatgaaaacggacttatgacaattttcacaag 6521133  T
Q  616 ctttttacagcttat 630  Q
    |||||| | ||||||    
T  6521132 cttttttcggcttat 6521118  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 595 - 629
Target Start/End: Original strand, 34669724 - 34669758
Alignment:
Q  595 actaatgacatttttcataagctttttacagctta 629  Q
    ||||||||||||||||||||||||||| |||||||    
T  34669724 actaatgacatttttcataagcttttttcagctta 34669758  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 535 - 584
Target Start/End: Complemental strand, 12425708 - 12425659
Alignment:
Q  535 tttgagcttatctaattacataagttttgcaagactgtttgggagaactt 584  Q
    |||||||||||||| |  |||||||||||  |||||||||||||||||||    
T  12425708 tttgagcttatctactgtcataagttttgtgagactgtttgggagaactt 12425659  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 535 - 584
Target Start/End: Complemental strand, 15015978 - 15015929
Alignment:
Q  535 tttgagcttatctaattacataagttttgcaagactgtttgggagaactt 584  Q
    |||||||||||||| | ||||||| ||||  |||||||||||||||||||    
T  15015978 tttgagcttatctactgacataagctttgtgagactgtttgggagaactt 15015929  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 519 - 584
Target Start/End: Complemental strand, 39594958 - 39594893
Alignment:
Q  519 tgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttgggagaactt 584  Q
    |||||||||||| || ||||||||||||||   ||||||||||||  ||| ||||||||| |||||    
T  39594958 tgtttggattgacttatttgagcttatctaccgacataagttttgttagattgtttgggacaactt 39594893  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 516 - 577
Target Start/End: Complemental strand, 40426919 - 40426858
Alignment:
Q  516 gcctgtttggattgatttgtttgagcttatctaattacataagttttgcaagactgtttggg 577  Q
    |||||||| | |||| || |||||||||||||||| |||||| |||||  ||||||||||||    
T  40426919 gcctgttttggttgacttatttgagcttatctaatgacataaattttgtgagactgtttggg 40426858  T

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