View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3055_low_61 (Length: 244)
Name: NF3055_low_61
Description: NF3055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3055_low_61 |
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Alignment Details
Target: chr8 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 10803841 - 10804070
Alignment:
| Q |
1 |
caaaagttccagtcccaacactaaaatcaaaaccaattctaaactctcctaacttcattccaagaacatcatcaatnnnnnnntcagcttctcctgtttg |
100 |
Q |
| |
|
||||||||||||| |||||||||||||| || |||||||||| |||||||||||| ||||||||||||||||| || |||||||| |||||||| |
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| T |
10803841 |
caaaagttccagttccaacactaaaatccaatccaattctaatctctcctaactttattccaagaacatcatctataaaaaaatcagcttcacctgtttg |
10803940 |
T |
|
| Q |
101 |
atttgaaattgaatcaccattcaatctcatccatctcggcatctcatgatcggtaagattaaaacaatcggcgcatttgaagaatccctttcgagcattg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10803941 |
atttgaaattgaatcaccattcaatctcatccatctcggcatctcatgatcggtaagattaaaacaatcggcgcatttgaagaatccctttcgagcattg |
10804040 |
T |
|
| Q |
201 |
ttattgcttgctagacaagtaaagttcttg |
230 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
10804041 |
ttattgcttgctagacaagtaaagttcttg |
10804070 |
T |
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