View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3055_low_62 (Length: 237)
Name: NF3055_low_62
Description: NF3055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3055_low_62 |
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Alignment Details
Target: chr6 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 26 - 136
Target Start/End: Complemental strand, 7724451 - 7724341
Alignment:
| Q |
26 |
tatgctatattttctatgcatttgtagttcgaaagatcagggaatgtctgaatcatcaaagaacaataaattgatggcaagacaatttgctaagcgaaga |
125 |
Q |
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| T |
7724451 |
tatgctatattttctttgcatttgtagttcgaaagatcagggaatgtctgaatcatcaaagaacaagaaattgatggcaagacaatttgctaagcgaaga |
7724352 |
T |
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| Q |
126 |
atcaattctct |
136 |
Q |
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||||||||||| |
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| T |
7724351 |
atcaattctct |
7724341 |
T |
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Target: chr6; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 134 - 222
Target Start/End: Complemental strand, 7722904 - 7722814
Alignment:
| Q |
134 |
tctcaactgtcaatttgctc--accttgctgcaacggaactttgcctgtacatactaattatcatacaggtgactaattatatacattaat |
222 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7722904 |
tctcaactgtcaatttgctctcaccttgctgcaacggaactttgcctgtacatactaattatcatacaggtgactaattatatacattaat |
7722814 |
T |
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