View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3055_low_7 (Length: 707)

Name: NF3055_low_7
Description: NF3055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3055_low_7
NF3055_low_7
[»] chr5 (27 HSPs)
chr5 (31-693)||(38299586-38300246)
chr5 (428-558)||(38292412-38292542)
chr5 (632-690)||(38304395-38304453)
chr5 (616-693)||(38292588-38292664)
chr5 (170-247)||(17476193-17476271)
chr5 (20-98)||(16773849-16773927)
chr5 (354-398)||(41048648-41048692)
chr5 (363-398)||(15238984-15239019)
chr5 (319-398)||(17476194-17476268)
chr5 (47-97)||(12877762-12877812)
chr5 (20-98)||(22020818-22020896)
chr5 (20-98)||(29075823-29075901)
chr5 (20-98)||(30109265-30109342)
chr5 (47-96)||(27840977-27841026)
chr5 (237-273)||(7148420-7148456)
chr5 (20-98)||(84866-84944)
chr5 (20-98)||(8278231-8278309)
chr5 (20-98)||(18206602-18206680)
chr5 (20-98)||(21549094-21549171)
chr5 (20-98)||(29173532-29173610)
chr5 (202-251)||(17441256-17441305)
chr5 (173-252)||(17441417-17441498)
chr5 (119-148)||(38292381-38292410)
chr5 (173-252)||(7148284-7148363)
chr5 (370-398)||(18936522-18936550)
chr5 (66-98)||(28285340-28285372)
chr5 (38-98)||(37421344-37421404)
[»] chr3 (16 HSPs)
chr3 (20-98)||(10445095-10445173)
chr3 (354-395)||(30259878-30259919)
chr3 (38-98)||(42358017-42358077)
chr3 (20-98)||(10499065-10499143)
chr3 (20-98)||(51903834-51903912)
chr3 (20-98)||(52769939-52770017)
chr3 (20-93)||(4844472-4844545)
chr3 (20-93)||(4870168-4870241)
chr3 (18-98)||(20501736-20501815)
chr3 (354-398)||(38421373-38421417)
chr3 (20-98)||(2667904-2667982)
chr3 (20-98)||(8170714-8170792)
chr3 (20-94)||(44743815-44743889)
chr3 (28-98)||(46552981-46553051)
chr3 (366-399)||(25858058-25858091)
chr3 (66-98)||(8075083-8075115)
[»] chr2 (31 HSPs)
chr2 (173-251)||(37828446-37828525)
chr2 (310-400)||(37828444-37828529)
chr2 (201-250)||(4865485-4865534)
chr2 (47-98)||(1435132-1435183)
chr2 (289-398)||(4865633-4865739)
chr2 (23-98)||(37755927-37756002)
chr2 (36-98)||(2295970-2296032)
chr2 (172-252)||(37828700-37828782)
chr2 (20-98)||(41908594-41908672)
chr2 (20-98)||(42602596-42602674)
chr2 (365-398)||(29667793-29667826)
chr2 (21-98)||(33569814-33569891)
chr2 (207-251)||(19478722-19478766)
chr2 (18-98)||(33582013-33582093)
chr2 (18-98)||(37480115-37480195)
chr2 (47-98)||(30410505-30410556)
chr2 (36-98)||(2311782-2311844)
chr2 (20-98)||(3001421-3001499)
chr2 (20-98)||(14500319-14500397)
chr2 (37-91)||(19244168-19244222)
chr2 (20-98)||(25637193-25637271)
chr2 (21-103)||(42222924-42223006)
chr2 (20-98)||(42860390-42860468)
chr2 (237-273)||(5847640-5847677)
chr2 (37-98)||(9318031-9318092)
chr2 (173-254)||(34233445-34233526)
chr2 (45-98)||(41390290-41390343)
chr2 (354-394)||(53764-53804)
chr2 (354-397)||(25557836-25557880)
chr2 (66-98)||(26773093-26773125)
chr2 (18-98)||(35203339-35203419)
[»] chr1 (28 HSPs)
chr1 (173-252)||(51249167-51249248)
chr1 (354-401)||(42175296-42175343)
chr1 (36-98)||(1094583-1094645)
chr1 (36-98)||(16893452-16893514)
chr1 (20-98)||(12587312-12587389)
chr1 (176-249)||(29861423-29861497)
chr1 (18-95)||(9879478-9879555)
chr1 (314-398)||(27631000-27631080)
chr1 (354-395)||(29861423-29861464)
chr1 (21-98)||(50901625-50901701)
chr1 (237-273)||(29861561-29861597)
chr1 (37-96)||(10526882-10526941)
chr1 (20-95)||(18037572-18037647)
chr1 (18-89)||(51814534-51814605)
chr1 (24-98)||(1205381-1205455)
chr1 (20-98)||(2799904-2799982)
chr1 (20-98)||(6122836-6122914)
chr1 (18-92)||(15065005-15065079)
chr1 (20-98)||(27476727-27476805)
chr1 (20-98)||(31383754-31383832)
chr1 (47-97)||(31794221-31794271)
chr1 (20-98)||(40257441-40257519)
chr1 (20-98)||(42949248-42949326)
chr1 (20-97)||(39979126-39979203)
chr1 (37-98)||(40810526-40810587)
chr1 (20-89)||(40814373-40814442)
chr1 (234-273)||(14614396-14614436)
chr1 (38-98)||(44961825-44961885)
[»] chr8 (20 HSPs)
chr8 (20-96)||(29431053-29431129)
chr8 (173-249)||(29795754-29795832)
chr8 (20-98)||(8485041-8485119)
chr8 (37-98)||(3305144-3305205)
chr8 (234-273)||(30201862-30201901)
chr8 (37-98)||(18540357-18540418)
chr8 (37-98)||(43866645-43866706)
chr8 (172-248)||(1410708-1410784)
chr8 (47-98)||(16317679-16317730)
chr8 (47-98)||(16585444-16585495)
chr8 (363-398)||(19923494-19923529)
chr8 (173-251)||(27187219-27187298)
chr8 (47-98)||(40791851-40791902)
chr8 (20-98)||(968404-968482)
chr8 (20-98)||(11819818-11819896)
chr8 (18-92)||(24675474-24675548)
chr8 (60-98)||(28783142-28783180)
chr8 (36-98)||(30774692-30774754)
chr8 (173-237)||(13706209-13706274)
chr8 (66-98)||(44780070-44780102)
[»] chr4 (20 HSPs)
chr4 (20-98)||(28635738-28635816)
chr4 (47-98)||(37274415-37274466)
chr4 (20-98)||(7949410-7949488)
chr4 (20-98)||(8030160-8030238)
chr4 (47-97)||(12793868-12793918)
chr4 (171-250)||(12828575-12828657)
chr4 (646-681)||(18745526-18745561)
chr4 (47-98)||(29312220-29312271)
chr4 (18-97)||(49262641-49262720)
chr4 (20-98)||(23377998-23378076)
chr4 (40-98)||(51250478-51250536)
chr4 (36-98)||(51954172-51954234)
chr4 (41-98)||(3350425-3350482)
chr4 (36-97)||(46174341-46174402)
chr4 (18-95)||(47386750-47386827)
chr4 (168-196)||(20822075-20822103)
chr4 (354-398)||(26310410-26310454)
chr4 (282-334)||(27940431-27940483)
chr4 (20-92)||(51622527-51622599)
chr4 (358-398)||(52073270-52073310)
[»] chr7 (32 HSPs)
chr7 (37-98)||(30579394-30579455)
chr7 (354-397)||(2169279-2169322)
chr7 (354-401)||(23475744-23475791)
chr7 (354-401)||(23534157-23534204)
chr7 (20-98)||(24438203-24438281)
chr7 (19-92)||(41519072-41519145)
chr7 (20-96)||(23301560-23301636)
chr7 (20-98)||(2446350-2446428)
chr7 (20-98)||(25132335-25132412)
chr7 (20-98)||(25590653-25590731)
chr7 (37-98)||(21558187-21558248)
chr7 (358-398)||(23443335-23443375)
chr7 (34-98)||(41975943-41976007)
chr7 (47-98)||(9183147-9183198)
chr7 (23-98)||(11720916-11720991)
chr7 (47-98)||(36188920-36188971)
chr7 (20-98)||(279910-279988)
chr7 (20-98)||(15137595-15137673)
chr7 (352-398)||(23474929-23474975)
chr7 (20-98)||(24107348-24107426)
chr7 (36-98)||(48079701-48079763)
chr7 (370-399)||(1505542-1505571)
chr7 (21-98)||(5668527-5668604)
chr7 (20-97)||(7309398-7309474)
chr7 (37-94)||(17113854-17113911)
chr7 (314-398)||(23533269-23533349)
chr7 (33-98)||(24513852-24513917)
chr7 (37-98)||(27313690-27313751)
chr7 (60-96)||(3968612-3968648)
chr7 (37-89)||(13106747-13106799)
chr7 (358-398)||(23457459-23457499)
chr7 (237-273)||(42602640-42602676)
[»] chr6 (14 HSPs)
chr6 (23-98)||(6385907-6385982)
chr6 (36-89)||(3172733-3172786)
chr6 (37-98)||(8597703-8597764)
chr6 (173-252)||(5449485-5449568)
chr6 (172-230)||(1706589-1706647)
chr6 (36-98)||(6758378-6758440)
chr6 (20-98)||(28363979-28364057)
chr6 (206-252)||(34397003-34397048)
chr6 (37-98)||(34444862-34444923)
chr6 (354-398)||(4974691-4974735)
chr6 (66-98)||(20213129-20213161)
chr6 (66-98)||(22107152-22107184)
chr6 (20-96)||(24256780-24256856)
chr6 (66-98)||(31622947-31622979)
[»] scaffold0258 (1 HSPs)
scaffold0258 (20-96)||(15281-15357)
[»] scaffold0126 (1 HSPs)
scaffold0126 (20-99)||(25302-25381)
[»] scaffold0122 (1 HSPs)
scaffold0122 (55-98)||(6878-6921)
[»] scaffold0368 (1 HSPs)
scaffold0368 (20-98)||(14921-14999)
[»] scaffold0260 (1 HSPs)
scaffold0260 (364-398)||(20559-20593)
[»] scaffold0009 (1 HSPs)
scaffold0009 (20-98)||(19803-19881)
[»] scaffold0118 (1 HSPs)
scaffold0118 (18-98)||(41589-41669)


Alignment Details
Target: chr5 (Bit Score: 579; Significance: 0; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 579; E-Value: 0
Query Start/End: Original strand, 31 - 693
Target Start/End: Original strand, 38299586 - 38300246
Alignment:
Q  31 ttcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaagtaaaagaataaagatattgtagagattgtgc 130  Q
    |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  38299586 ttcttgaggtctcagattcgattttctccggtgctaatttgcgtgggctaatttagcttcttcaaaaagtaaaagaacaaagatattgtagagattgtgc 38299685  T
Q  131 tgtgttttggctttcaattgttcttccgcaaaacaattgtaagaaaattgctcttctcccaaaaaagactttcactctcatacaaactgactaaaatacc 230  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||     
T  38299686 tgtgttttggctttcaattgtgcttccgcaaatcaattgtaagaaaattgctcttctcccaaaaaagacgttcactcccatacaaactgactaaaatact 38299785  T
Q  231 cccgcgtgagttaactcacgctgagttataacctgcgtgagttgggtactgaacgtcgcttaagtcacgttggtttaacacctacgtaagttaactcacg 330  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  38299786 cccgcgtgagttaactcacgctgagttataacctgcgtgagttggatattgaacgtcacttaagtcacgttggtttaaaacctacgtaagttaactcacg 38299885  T
Q  331 tgggcgtattttggtcagtttaatttgtatgtgagtgagcgttttttgttgggagaagagcaattttccaattgtaatggttcaaagacaatcatttcgg 430  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38299886 tgggcgtattttggtcagtttaatttgtatgtgagtgagcgttttttgttgggagaagagcaattttccaattgtaatggttcaaagacaatcatttcgg 38299985  T
Q  431 ataaatcaacttaatcaatcttactatataatgaatctgatagctgcagaatcgctacaaaattttcaaacataatgaaaataaaccctagcataaactg 530  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  38299986 ataaatcaatttaatcaatcttactatataatgaatctgatagctgcagaatcgctacaaaattttcaaacataatgaaaataaaccctagcat-aactg 38300084  T
Q  531 caagattcctgcaaatacttattttattgaaaaactagtattggaataatccaatcaagtagagaagctgactcaagaataatcctttttatgtatagtt 630  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  38300085 caagattcctgcaaatacttattttattgaaaaactagtattggaataatccaatcaagtagagaagctgactcaagaataatcctttttctgtatagtt 38300184  T
Q  631 aggtatattgtcaacccatccatcttcatttatgaaagatgataaagaataatcatttatatt 693  Q
     |||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  38300185 -ggtatattgttaagccatctatcttcatttatgaaagatgataaagaataatcatttatatt 38300246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 428 - 558
Target Start/End: Original strand, 38292412 - 38292542
Alignment:
Q  428 cggataaatcaacttaatcaatcttactatataatgaatctgatagctgcagaatcgctacaaaattttcaaacataat-gaaaataaaccctagcataa 526  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||| ||| |||||||||  ||||||||||||||||| |    
T  38292412 cggataaatcaacttaatcaatcttagtatataatgaatctgataggtgcagaattgctacaaaagtttgaaacataatcaaaaataaaccctagcat-a 38292510  T
Q  527 actgcaagattcctgcaaatacttattttatt 558  Q
    |||||||||||||| || | ||||||||||||    
T  38292511 actgcaagattcctacatacacttattttatt 38292542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 632 - 690
Target Start/End: Original strand, 38304395 - 38304453
Alignment:
Q  632 ggtatattgtcaacccatccatcttcatttatgaaagatgataaagaataatcatttat 690  Q
    |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  38304395 ggtatattgttaagccatccatcttcatttatgaaagatgataaagaataatcatttat 38304453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 616 - 693
Target Start/End: Original strand, 38292588 - 38292664
Alignment:
Q  616 tttttatgtatagttaggtatattgtcaacccatccatcttcatttatgaaagatgataaagaataatcatttatatt 693  Q
    ||||||||||||| | ||||| |||  || ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  38292588 tttttatgtataggt-ggtatgttggaaagccatctatcttcatttatgaaagatgataaagaataatcatttatatt 38292664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 170 - 247
Target Start/End: Complemental strand, 17476271 - 17476193
Alignment:
Q  170 taagaaaattgctcttctcccaa-aaaagactttcactctcatacaaactgactaaaatacccccgcgtgagttaactc 247  Q
    ||||||||||| ||||||||||| |||| || ||| ||||||||||||||||| |||||||| || |||||||||||||    
T  17476271 taagaaaattgttcttctcccaacaaaaaacgttcgctctcatacaaactgaccaaaatacctccacgtgagttaactc 17476193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 16773849 - 16773927
Alignment:
Q  20 gagtgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    |||||||||| | || |||||||||  ||||||| |||||| ||| |||||  ||||||||||||||||||||||||||    
T  16773849 gagtgtgctcctcctcgaggtctcaggttcgattctctctgatgccaatttaggtgggctaatttagcttcttcaaaaa 16773927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 354 - 398
Target Start/End: Complemental strand, 41048692 - 41048648
Alignment:
Q  354 tttgtatgtgagtgagcgttttttgttgggagaagagcaattttc 398  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||    
T  41048692 tttgtatgggagtgtgcgttttttgttgggagaagagcaattttc 41048648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 363 - 398
Target Start/End: Original strand, 15238984 - 15239019
Alignment:
Q  363 gagtgagcgttttttgttgggagaagagcaattttc 398  Q
    ||||||||||||||||||||||||||||||||||||    
T  15238984 gagtgagcgttttttgttgggagaagagcaattttc 15239019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 319 - 398
Target Start/End: Original strand, 17476194 - 17476268
Alignment:
Q  319 agttaactcacgtgggcgtattttggtcagtttaatttgtatgtgagtgagcgttttttgttgggagaagagcaattttc 398  Q
    |||||||||||||||  ||||||||||||||||     ||||| ||| || |||||||||||||||||||| ||||||||    
T  17476194 agttaactcacgtggaggtattttggtcagttt-----gtatgagagcgaacgttttttgttgggagaagaacaattttc 17476268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 97
Target Start/End: Original strand, 12877762 - 12877812
Alignment:
Q  47 ttcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaa 97  Q
    ||||||| |||||||| |||||||  |||||||||||||||||||||||||    
T  12877762 ttcgattctctctggtactaatttaggtgggctaatttagcttcttcaaaa 12877812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 22020896 - 22020818
Alignment:
Q  20 gagtgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    |||||||||| | ||||| |||||| |||||||| ||||  ||| ||||||  |||||||||||||| |||||||||||    
T  22020896 gagtgtgctcctccttgaagtctcagattcgattctctccagtgttaatttaggtgggctaatttagtttcttcaaaaa 22020818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 29075823 - 29075901
Alignment:
Q  20 gagtgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    |||||||||| | || ||| |||||  ||||||| |||||||||| |||||   |||||||||||||||||||||||||    
T  29075823 gagtgtgctcctcctcgagatctcatgttcgattctctctggtgccaatttagatgggctaatttagcttcttcaaaaa 29075901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 30109342 - 30109265
Alignment:
Q  20 gagtgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    |||||||||| | ||||||||||||  |||||||  | | |||||||||||  ||||||||||||||||||||||||||    
T  30109342 gagtgtgctcctccttgaggtctcaggttcgattccccc-ggtgctaatttaggtgggctaatttagcttcttcaaaaa 30109265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 27841026 - 27840977
Alignment:
Q  47 ttcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaa 96  Q
    ||||||| ||||||||| |||||||  |||||||||||||||||||||||    
T  27841026 ttcgattctctctggtgttaatttggatgggctaatttagcttcttcaaa 27840977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 237 - 273
Target Start/End: Original strand, 7148420 - 7148456
Alignment:
Q  237 tgagttaactcacgctgagttataacctgcgtgagtt 273  Q
    |||||||||||||||||||||||||||| ||||||||    
T  7148420 tgagttaactcacgctgagttataacctacgtgagtt 7148456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 84866 - 84944
Alignment:
Q  20 gagtgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    |||||||||| | ||  ||||||||| ||||||| || | ||||| | | || ||||||||||||||||||||||||||    
T  84866 gagtgtgctcctcctcaaggtctcaagttcgattctccccggtgccattatgggtgggctaatttagcttcttcaaaaa 84944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 8278309 - 8278231
Alignment:
Q  20 gagtgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    |||||||||| | || ||| |||||| || |||| |||| |||||  ||||  ||||||||||||||||||||||||||    
T  8278309 gagtgtgctcctcctcgagatctcaagtttgattatctccggtgccgatttaggtgggctaatttagcttcttcaaaaa 8278231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 18206680 - 18206602
Alignment:
Q  20 gagtgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    |||||||||| | ||| ||||  || |||||| | ||||| |||| |||||| |||||||||||||||||||| |||||    
T  18206680 gagtgtgctcctcctttaggttccagattcgactctctctagtgccaatttgggtgggctaatttagcttcttaaaaaa 18206602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 21549171 - 21549094
Alignment:
Q  20 gagtgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    |||||||||| | ||| | ||||||| ||||||||||||| |||| |||||| | ||| || |||||||||||||||||    
T  21549171 gagtgtgctcctccttaaagtctcaagttcgattttctctagtgccaatttgag-gggttagtttagcttcttcaaaaa 21549094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 29173532 - 29173610
Alignment:
Q  20 gagtgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    |||||||||| | || ||||| |||  ||||||| |||||||||  |||||  |||||||||||||||||||| |||||    
T  29173532 gagtgtgctcctcctcgaggtttcaggttcgattatctctggtgtcaatttaggtgggctaatttagcttcttaaaaaa 29173610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 251
Target Start/End: Original strand, 17441256 - 17441305
Alignment:
Q  202 tcactctcatacaaactgactaaaatacccccgcgtgagttaactcacgc 251  Q
    |||||| ||||||||||||| |||||||| | | ||||||||||||||||    
T  17441256 tcactcccatacaaactgacaaaaatacctctgtgtgagttaactcacgc 17441305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 252
Target Start/End: Complemental strand, 17441498 - 17441417
Alignment:
Q  173 gaaaattgctcttctcccaa-aaaagactttcactctcatacaaactgactaaaataccc-ccgcgtgagttaactcacgct 252  Q
    |||||||| | ||||||||| |||| ||  ||||||| | ||||| |||||||||||||| || ||||||||||||||||||    
T  17441498 gaaaattgattttctcccaacaaaaaacgctcactcttacacaaattgactaaaatacccaccacgtgagttaactcacgct 17441417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 148
Target Start/End: Original strand, 38292381 - 38292410
Alignment:
Q  119 tagagattgtgctgtgttttggctttcaat 148  Q
    ||||||||||||||||||||||||||||||    
T  38292381 tagagattgtgctgtgttttggctttcaat 38292410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 252
Target Start/End: Original strand, 7148284 - 7148363
Alignment:
Q  173 gaaaattgctcttctcccaaaaaagactttcactctcatacaaactgactaaaatac-ccccgcgtgagttaactcacgct 252  Q
    |||||||||| ||||||||| ||| |   |||||| ||||||||||||| ||||||| |||  ||||||||||||||||||    
T  7148284 gaaaattgct-ttctcccaacaaaaaagctcactcccatacaaactgaccaaaatactccctacgtgagttaactcacgct 7148363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 370 - 398
Target Start/End: Complemental strand, 18936550 - 18936522
Alignment:
Q  370 cgttttttgttgggagaagagcaattttc 398  Q
    |||||||||||||||||||||||||||||    
T  18936550 cgttttttgttgggagaagagcaattttc 18936522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 66 - 98
Target Start/End: Original strand, 28285340 - 28285372
Alignment:
Q  66 aatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    |||||| ||||||||||||||||||||||||||    
T  28285340 aatttgggtgggctaatttagcttcttcaaaaa 28285372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 38 - 98
Target Start/End: Original strand, 37421344 - 37421404
Alignment:
Q  38 ggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    ||||||| |||||||| || |||||||||||||  |||||||| ||||| || ||||||||    
T  37421344 ggtctcagattcgattctccctggtgctaattttggtgggctagtttagtttattcaaaaa 37421404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 7e-20; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 10445173 - 10445095
Alignment:
Q  20 gagtgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    |||||||||| | || |||||||||  ||||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  10445173 gagtgtgctcctcctcgaggtctcaggttcgattctctctggtgctaatttgagtgggctaatttagcttcttcaaaaa 10445095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 354 - 395
Target Start/End: Original strand, 30259878 - 30259919
Alignment:
Q  354 tttgtatgtgagtgagcgttttttgttgggagaagagcaatt 395  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  30259878 tttgtatgggagtgagcgttttttgttgggagaagagcaatt 30259919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 98
Target Start/End: Original strand, 42358017 - 42358077
Alignment:
Q  38 ggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    |||||||  ||||||||||||||| || |||||| |||| |||||||||||||||||||||    
T  42358017 ggtctcaggttcgattttctctggcgccaatttgagtggactaatttagcttcttcaaaaa 42358077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 10499143 - 10499065
Alignment:
Q  20 gagtgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    |||| ||||| | ||||||||||||  ||||||| |||| | ||  |||||| ||||||||||||||||||||||||||    
T  10499143 gagtctgctcttccttgaggtctcaggttcgattctctccgatgtcaatttgggtgggctaatttagcttcttcaaaaa 10499065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 51903912 - 51903834
Alignment:
Q  20 gagtgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    |||||||||| | || | |||||||  ||||||| |||| ||||  |||||| ||||||||||||||||||||||||||    
T  51903912 gagtgtgctcctcctcgtggtctcaggttcgattctctccggtgtcaatttgagtgggctaatttagcttcttcaaaaa 51903834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 52770017 - 52769939
Alignment:
Q  20 gagtgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    |||||||||| | ||||||||||||  ||||||| ||| | |||  |||||  ||||||||||||||||||||||||||    
T  52770017 gagtgtgctcctccttgaggtctcaggttcgattctctttagtgtcaatttaggtgggctaatttagcttcttcaaaaa 52769939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 4844545 - 4844472
Alignment:
Q  20 gagtgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttc 93  Q
    |||||||||| | || |||||||||   |||||| |||| ||||| |||||| |||||||||||||||||||||    
T  4844545 gagtgtgctcctcctcgaggtctcaggatcgattctctccggtgccaatttgtgtgggctaatttagcttcttc 4844472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 4870241 - 4870168
Alignment:
Q  20 gagtgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttc 93  Q
    |||||||||| | || |||||||||   |||||| |||| ||||| |||||| |||||||||||||||||||||    
T  4870241 gagtgtgctcctcctcgaggtctcaggatcgattctctccggtgccaatttgtgtgggctaatttagcttcttc 4870168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 20501736 - 20501815
Alignment:
Q  18 gagagtgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    |||||||||||| | ||| ||||||||  ||||||| ||||  |||| |||||| | ||||||||||||||||||||||||    
T  20501736 gagagtgtgctcctccttaaggtctcaggttcgattctctccagtgccaatttgag-gggctaatttagcttcttcaaaaa 20501815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 354 - 398
Target Start/End: Original strand, 38421373 - 38421417
Alignment:
Q  354 tttgtatgtgagtgagcgttttttgttgggagaagagcaattttc 398  Q
    |||||| | |||| |||||||||||||||||||||||||||||||    
T  38421373 tttgtaagggagtcagcgttttttgttgggagaagagcaattttc 38421417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 2667904 - 2667982
Alignment:
Q  20 gagtgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    |||||||||| | || |||||||||  ||||||| ||||| |||  |||||  |||||||| |||||||||||||||||    
T  2667904 gagtgtgctcttcctcgaggtctcaggttcgattatctctagtgtcaatttaggtgggctagtttagcttcttcaaaaa 2667982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 8170714 - 8170792
Alignment:
Q  20 gagtgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    |||||||||| | ||  ||||||||  |||||||| ||||||||  |||||| |||||||||||||  |||||||||||    
T  8170714 gagtgtgctcctactcaaggtctcaggttcgatttcctctggtgtcaatttgggtgggctaatttaaattcttcaaaaa 8170792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 20 - 94
Target Start/End: Complemental strand, 44743889 - 44743815
Alignment:
Q  20 gagtgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttca 94  Q
    |||||||||| | || |||||||||  ||||||| ||||  |||| |||||| ||||| ||||||||||||||||    
T  44743889 gagtgtgctcctcctcgaggtctcaggttcgattatctccagtgccaatttgggtgggttaatttagcttcttca 44743815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 46552981 - 46553051
Alignment:
Q  28 tcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    |||||||  |||||||| |||||||| ||||| |||| |||||| ||||| || ||||| |||||||||||    
T  46552981 tcattctcaaggtctcagattcgattctctctagtgccaatttgggtgggttagtttagtttcttcaaaaa 46553051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 366 - 399
Target Start/End: Original strand, 25858058 - 25858091
Alignment:
Q  366 tgagcgttttttgttgggagaagagcaattttcc 399  Q
    |||| |||||||||||||||||||||||||||||    
T  25858058 tgagtgttttttgttgggagaagagcaattttcc 25858091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 66 - 98
Target Start/End: Complemental strand, 8075115 - 8075083
Alignment:
Q  66 aatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    |||||| ||||||||||||||||||||||||||    
T  8075115 aatttgggtgggctaatttagcttcttcaaaaa 8075083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 5e-18; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 173 - 251
Target Start/End: Original strand, 37828446 - 37828525
Alignment:
Q  173 gaaaattgctcttctcccaa-aaaagactttcactctcatacaaactgactaaaatacccccgcgtgagttaactcacgc 251  Q
    |||||||||||||||||||| |||| ||  |||||| ||||||||||||| ||||||||| |||||||||||||||||||    
T  37828446 gaaaattgctcttctcccaacaaaaaacgatcactcacatacaaactgaccaaaataccctcgcgtgagttaactcacgc 37828525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 310 - 400
Target Start/End: Complemental strand, 37828529 - 37828444
Alignment:
Q  310 acctacgtaagttaactcacgtgggcgtattttggtcagtttaatttgtatgtgagtgagcgttttttgttgggagaagagcaattttcca 400  Q
    |||| ||| |||||||||||| | | ||||||||||||||||     |||||||||||| |||||||||||||||||||||||||||||||    
T  37828529 acctgcgtgagttaactcacgcgagggtattttggtcagttt-----gtatgtgagtgatcgttttttgttgggagaagagcaattttcca 37828444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 201 - 250
Target Start/End: Original strand, 4865485 - 4865534
Alignment:
Q  201 ttcactctcatacaaactgactaaaatacccccgcgtgagttaactcacg 250  Q
    |||||||||||||||||| || ||||||||||| ||||||||||||||||    
T  4865485 ttcactctcatacaaacttaccaaaatacccccacgtgagttaactcacg 4865534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 47 - 98
Target Start/End: Original strand, 1435132 - 1435183
Alignment:
Q  47 ttcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    ||||||| |||||||||  |||||| ||||||||||||||||||||||||||    
T  1435132 ttcgattctctctggtgtcaatttgggtgggctaatttagcttcttcaaaaa 1435183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 289 - 398
Target Start/End: Original strand, 4865633 - 4865739
Alignment:
Q  289 cttaagtcacgttgg-tttaacacctacgtaagttaactcacgtgggcg-tattttggtcagtttaatttgtatgtgagtgagcgttttttgttgggaga 386  Q
    ||||||||||||||| ||||||||||  |||| |||| ||| ||||| | |||||||||||||||     ||||| |||||| | ||||||||||||||     
T  4865633 cttaagtcacgttggatttaacacctgtgtaacttaagtcatgtgggtggtattttggtcagttt-----gtatgggagtgaacattttttgttgggagg 4865727  T
Q  387 agagcaattttc 398  Q
    ||||||||||||    
T  4865728 agagcaattttc 4865739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 23 - 98
Target Start/End: Complemental strand, 37756002 - 37755927
Alignment:
Q  23 tgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    ||||||| | || |||||||||| ||||| |  ||||| ||| |||||| ||||||||||||||||||||||||||    
T  37756002 tgtgctcctactcgaggtctcaagttcgactccctctgatgccaatttgagtgggctaatttagcttcttcaaaaa 37755927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 98
Target Start/End: Original strand, 2295970 - 2296032
Alignment:
Q  36 gaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    ||||||||| ||||||||||||  ||||  ||||||  |||||||||||||||||||||||||    
T  2295970 gaggtctcagattcgattttcttcggtgtcaatttgaatgggctaatttagcttcttcaaaaa 2296032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 252
Target Start/End: Complemental strand, 37828782 - 37828700
Alignment:
Q  172 agaaaattgctcttctcccaa-aaaagactttcactctcatacaaactgactaaaatacccccg-cgtgagttaactcacgct 252  Q
    ||||||||||||||||||| | |||| || |||||||  ||||||||| || |||||||||||  ||||||||||||||||||    
T  37828782 agaaaattgctcttctcccgacaaaaaacattcactcctatacaaacttaccaaaataccccccacgtgagttaactcacgct 37828700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 41908672 - 41908594
Alignment:
Q  20 gagtgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    |||||||||| | ||  ||||||||| ||||||| || | ||||| |||||| |||||||| |||||||||||||||||    
T  41908672 gagtgtgctcctcctcaaggtctcaagttcgattatccccggtgccaatttgggtgggctagtttagcttcttcaaaaa 41908594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 42602596 - 42602674
Alignment:
Q  20 gagtgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    |||||||||| ||||  |||||| |  || |||| |||| ||||| |||||| ||||||||||||||||||||||||||    
T  42602596 gagtgtgctccttctcaaggtcttaggtttgattctctccggtgccaatttgggtgggctaatttagcttcttcaaaaa 42602674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 365 - 398
Target Start/End: Original strand, 29667793 - 29667826
Alignment:
Q  365 gtgagcgttttttgttgggagaagagcaattttc 398  Q
    ||||||||||||||||||||||||||||||||||    
T  29667793 gtgagcgttttttgttgggagaagagcaattttc 29667826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 98
Target Start/End: Complemental strand, 33569891 - 33569814
Alignment:
Q  21 agtgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    ||||||||| | || |||||||||  ||||||| ||||||||||||||||  |||| ||||||| ||||||| |||||    
T  33569891 agtgtgctcttcctcgaggtctcaggttcgattctctctggtgctaatttaagtggactaattttgcttcttaaaaaa 33569814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 207 - 251
Target Start/End: Original strand, 19478722 - 19478766
Alignment:
Q  207 ctcatacaaactgactaaaatacccccgcgtgagttaactcacgc 251  Q
    ||||||||||||||||||||||||||  |||||||||| ||||||    
T  19478722 ctcatacaaactgactaaaataccccaacgtgagttaagtcacgc 19478766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 33582013 - 33582093
Alignment:
Q  18 gagagtgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    |||||||||||| | ||||||||||||  ||||||| |||||  ||  |||||  |||| |||||||||||||||||||||    
T  33582013 gagagtgtgctcctccttgaggtctcaggttcgattctctctaatgtcaatttaggtggactaatttagcttcttcaaaaa 33582093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 37480115 - 37480195
Alignment:
Q  18 gagagtgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    |||||||||||| | ||  ||||||||  ||||||| || | ||| | |||||| ||||||||||||||||||||||||||    
T  37480115 gagagtgtgctcctcctcaaggtctcaggttcgattctccccggtcccaatttgggtgggctaatttagcttcttcaaaaa 37480195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 98
Target Start/End: Complemental strand, 30410556 - 30410505
Alignment:
Q  47 ttcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    |||||||||||||||||| |||||| | ||| || |||||||||||||||||    
T  30410556 ttcgattttctctggtgccaatttgagggggttagtttagcttcttcaaaaa 30410505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 36 - 98
Target Start/End: Original strand, 2311782 - 2311844
Alignment:
Q  36 gaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    |||||||||  |||||||||||  ||||  |||||| |||||||||||| |||||||||||||    
T  2311782 gaggtctcaggttcgattttcttcggtgtcaatttgagtgggctaatttggcttcttcaaaaa 2311844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 3001421 - 3001499
Alignment:
Q  20 gagtgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    |||||||||| | |||||| |||||  ||||||| |||||||||| | |||  |||||||||||||| ||||| |||||    
T  3001421 gagtgtgctcctccttgagatctcaggttcgattatctctggtgccagtttatgtgggctaatttaggttcttaaaaaa 3001499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 14500319 - 14500397
Alignment:
Q  20 gagtgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    |||||||||| | ||  |||||||| |||||||| |||||||||| |||||| | ||| || ||||||||||| |||||    
T  14500319 gagtgtgctcctcctctaggtctcagattcgattctctctggtgccaatttgagggggatagtttagcttcttaaaaaa 14500397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 37 - 91
Target Start/End: Original strand, 19244168 - 19244222
Alignment:
Q  37 aggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttct 91  Q
    ||||||||  ||||||| |||||||||| |||||| |||||||||||||| ||||    
T  19244168 aggtctcaggttcgattctctctggtgccaatttgagtgggctaatttagtttct 19244222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 25637193 - 25637271
Alignment:
Q  20 gagtgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    |||||||||| |||| |||||||||  |||| || |||| | ||| |||||  ||||||||||||| ||||||||||||    
T  25637193 gagtgtgctccttctcgaggtctcaggttcggttctctccgatgccaatttaggtgggctaatttaacttcttcaaaaa 25637271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 21 - 103
Target Start/End: Original strand, 42222924 - 42223006
Alignment:
Q  21 agtgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaagtaaa 103  Q
    ||||||||| ||||||| |||| |  ||||||| |||  ||||  |||||| ||||| |||||||| ||||||||||||||||    
T  42222924 agtgtgctccttcttgaagtcttaggttcgattctcttcggtgtcaatttgggtgggttaatttagattcttcaaaaagtaaa 42223006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 42860390 - 42860468
Alignment:
Q  20 gagtgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    |||||||||| | || |||||||||| |||||||  |   ||||||| |||| ||||||||||||| ||||||||||||    
T  42860390 gagtgtgctcctcctcgaggtctcaagttcgattcccgtcggtgctagtttgagtgggctaatttaacttcttcaaaaa 42860468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 237 - 273
Target Start/End: Complemental strand, 5847677 - 5847640
Alignment:
Q  237 tgagttaactcacgctgag-ttataacctgcgtgagtt 273  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  5847677 tgagttaactcacgctgagtttataacctgcgtgagtt 5847640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 98
Target Start/End: Complemental strand, 9318092 - 9318031
Alignment:
Q  37 aggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    ||||||||  ||||||| |||||| ||| |||| | |||||||||||||| |||||||||||    
T  9318092 aggtctcaggttcgattctctctgatgccaattcgggtgggctaatttagtttcttcaaaaa 9318031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 254
Target Start/End: Original strand, 34233445 - 34233526
Alignment:
Q  173 gaaaattgctcttctcccaaaaaagactttcactctcatacaaactgactaaaatacccccgcgtgagttaactcacgctga 254  Q
    ||||| ||||||||||| |||||| | | |||||| ||  ||||||    |||||||||| |||||||||||||||||||||    
T  34233445 gaaaaatgctcttctccaaaaaaaaattctcactcacaatcaaacttttcaaaatacccctgcgtgagttaactcacgctga 34233526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 98
Target Start/End: Original strand, 41390290 - 41390343
Alignment:
Q  45 aattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    ||||||||| |||  ||||| |||||| ||||||||||||| ||||||||||||    
T  41390290 aattcgattctcttcggtgccaatttgggtgggctaatttaacttcttcaaaaa 41390343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 354 - 394
Target Start/End: Complemental strand, 53804 - 53764
Alignment:
Q  354 tttgtatgtgagtgagcgttttttgttgggagaagagcaat 394  Q
    |||||||||||||||||  |||||| |||||||||||||||    
T  53804 tttgtatgtgagtgagcaatttttgatgggagaagagcaat 53764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 354 - 397
Target Start/End: Complemental strand, 25557880 - 25557836
Alignment:
Q  354 tttgtatgtgagtgagcgtttttt-gttgggagaagagcaatttt 397  Q
    |||||||| ||||||||||||||| ||||| ||||||||||||||    
T  25557880 tttgtatgggagtgagcgtttttttgttggaagaagagcaatttt 25557836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 66 - 98
Target Start/End: Complemental strand, 26773125 - 26773093
Alignment:
Q  66 aatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    |||||| ||||||||||||||||||||||||||    
T  26773125 aatttgggtgggctaatttagcttcttcaaaaa 26773093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 35203419 - 35203339
Alignment:
Q  18 gagagtgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    |||||||||||||| ||  | ||||||  ||||||| ||| |||||  |||||  ||||| ||||||||||||||||||||    
T  35203419 gagagtgtgctcatcctcaaagtctcatgttcgattatctttggtgtcaatttaagtgggttaatttagcttcttcaaaaa 35203339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 7e-17; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 173 - 252
Target Start/End: Original strand, 51249167 - 51249248
Alignment:
Q  173 gaaaattgctcttctcccaa-aaaagactttcactctcatacaaactgactaaaata-cccccgcgtgagttaactcacgct 252  Q
    |||||||||||||||||||| ||||||| | |||||||||| ||||||||||||||| ||  ||||||||||||||||||||    
T  51249167 gaaaattgctcttctcccaacaaaagacgtgcactctcatataaactgactaaaatatccttcgcgtgagttaactcacgct 51249248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 354 - 401
Target Start/End: Original strand, 42175296 - 42175343
Alignment:
Q  354 tttgtatgtgagtgagcgttttttgttgggagaagagcaattttccaa 401  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||    
T  42175296 tttgtatgggagtgagtgttttttgttgggagaagagcaattttccaa 42175343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 98
Target Start/End: Original strand, 1094583 - 1094645
Alignment:
Q  36 gaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    |||||||||||||||||| |||| ||||| |||||  ||||||||||||| ||||||||||||    
T  1094583 gaggtctcaaattcgattctctccggtgccaatttaggtgggctaatttaacttcttcaaaaa 1094645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 98
Target Start/End: Original strand, 16893452 - 16893514
Alignment:
Q  36 gaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    |||||||||  |||||||||||| ||||  |||||| ||||||||||||||||||||||||||    
T  16893452 gaggtctcaggttcgattttctccggtgtcaatttgagtgggctaatttagcttcttcaaaaa 16893514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 12587312 - 12587389
Alignment:
Q  20 gagtgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    |||||||||| | || |||||||||  ||||||| |||| ||||| |||||  ||||||||||||||||||||||||||    
T  12587312 gagtgtgctcctcctcgaggtctcaggttcgattctctccggtgc-aatttaggtgggctaatttagcttcttcaaaaa 12587389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 249
Target Start/End: Original strand, 29861423 - 29861497
Alignment:
Q  176 aattgctcttctcccaa-aaaagactttcactctcatacaaactgactaaaatacccccgcgtgagttaactcac 249  Q
    |||||||||| |||||| |||| ||  |||||||||||||||||  | |||||||| ||||||||||||||||||    
T  29861423 aattgctcttatcccaacaaaaaacgctcactctcatacaaactagccaaaatacctccgcgtgagttaactcac 29861497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 9879478 - 9879555
Alignment:
Q  18 gagagtgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaa 95  Q
    |||||||| ||| | |||||||||||| |||||||| |||||  ||  |||||| ||||||||||||| |||||||||    
T  9879478 gagagtgtactcttccttgaggtctcagattcgattatctcttatgtcaatttgggtgggctaatttaacttcttcaa 9879555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 314 - 398
Target Start/End: Complemental strand, 27631080 - 27631000
Alignment:
Q  314 acgtaagttaactcacgtgggc-gtattttggtcagtttaatttgtatgtgagtgagcgttttttgttgggagaagagcaattttc 398  Q
    |||| ||||||||||||||||  || |||| |||||||||     |||| ||||||||||||||||||||||||||||| ||||||    
T  27631080 acgtgagttaactcacgtgggatgtgttttagtcagttta-----tatgggagtgagcgttttttgttgggagaagagctattttc 27631000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 354 - 395
Target Start/End: Complemental strand, 29861464 - 29861423
Alignment:
Q  354 tttgtatgtgagtgagcgttttttgttgggagaagagcaatt 395  Q
    |||||||| |||||||||||||||||||||| ||||||||||    
T  29861464 tttgtatgagagtgagcgttttttgttgggataagagcaatt 29861423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 98
Target Start/End: Original strand, 50901625 - 50901701
Alignment:
Q  21 agtgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    ||||||||| | || |||||||||||||||||| ||||  |||| |||||  |||||||||||||||||||| |||||    
T  50901625 agtgtgctcctcctcgaggtctcaaattcgattctctc-agtgccaatttaggtgggctaatttagcttcttaaaaaa 50901701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 237 - 273
Target Start/End: Complemental strand, 29861597 - 29861561
Alignment:
Q  237 tgagttaactcacgctgagttataacctgcgtgagtt 273  Q
    ||||||||||||||||| |||||||||||||||||||    
T  29861597 tgagttaactcacgctgggttataacctgcgtgagtt 29861561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 96
Target Start/End: Original strand, 10526882 - 10526941
Alignment:
Q  37 aggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaa 96  Q
    |||||||| |||||||| ||||||| |  |||||| ||||| ||||||||||||||||||    
T  10526882 aggtctcagattcgattctctctggagtcaatttgggtgggttaatttagcttcttcaaa 10526941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 18037647 - 18037572
Alignment:
Q  20 gagtgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaa 95  Q
    |||||||||| || | ||| |||||| ||||||| |||| |||||  ||||  |||||||||||||||||||||||    
T  18037647 gagtgtgctccttttcgagatctcaagttcgattctctccggtgccgatttaggtgggctaatttagcttcttcaa 18037572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 51814534 - 51814605
Alignment:
Q  18 gagagtgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagctt 89  Q
    |||||||||||| | ||  ||||||||  ||||||| |||| ||||| |||||| |||||||||||||||||    
T  51814534 gagagtgtgctcctcctcaaggtctcaggttcgattctctccggtgccaatttgggtgggctaatttagctt 51814605  T

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Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 24 - 98
Target Start/End: Complemental strand, 1205455 - 1205381
Alignment:
Q  24 gtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    |||||| | ||||||||||||| ||||||||| || |||   |||||| |||||||| ||||||||||| |||||    
T  1205455 gtgctcctccttgaggtctcaagttcgattttttccggtatcaatttgggtgggctagtttagcttcttaaaaaa 1205381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 2799904 - 2799982
Alignment:
Q  20 gagtgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    |||||||||| | ||  ||||||||  ||||||| |||||||||| |||||| | ||| || |||||||||||||||||    
T  2799904 gagtgtgctcctcctcaaggtctcaggttcgattctctctggtgccaatttgagggggttagtttagcttcttcaaaaa 2799982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 6122836 - 6122914
Alignment:
Q  20 gagtgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    |||||||||| | ||  ||||||||  |||||||  |||| |||  |||||| ||||||||||||||||||||||||||    
T  6122836 gagtgtgctcctcctcaaggtctcaggttcgattccctctagtgtcaatttgggtgggctaatttagcttcttcaaaaa 6122914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 15065005 - 15065079
Alignment:
Q  18 gagagtgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttctt 92  Q
    |||||||||||||| ||  ||||||||  ||| |||||| | ||||  |||||| ||||||||||||||||||||    
T  15065005 gagagtgtgctcatcctcaaggtctcaggttcaattttccccggtgtcaatttgggtgggctaatttagcttctt 15065079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 27476805 - 27476727
Alignment:
Q  20 gagtgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    |||||||||| | || ||| |||||| || |||| ||||||||||  ||||  |||||||||||||||||||| |||||    
T  27476805 gagtgtgctcctcctcgagatctcaagtttgattctctctggtgccgatttaggtgggctaatttagcttcttaaaaaa 27476727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 31383832 - 31383754
Alignment:
Q  20 gagtgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    |||||||||| | |||| |||||||  ||||||| |||  ||||| |||||| ||||||||| ||| ||||||||||||    
T  31383832 gagtgtgctcctccttggggtctcaggttcgattctcttaggtgccaatttgggtgggctaacttaccttcttcaaaaa 31383754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 47 - 97
Target Start/End: Complemental strand, 31794271 - 31794221
Alignment:
Q  47 ttcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaa 97  Q
    |||||||  ||||||||  |||||| |||||||||||||||||||||||||    
T  31794271 ttcgattccctctggtgtcaatttgggtgggctaatttagcttcttcaaaa 31794221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 40257441 - 40257519
Alignment:
Q  20 gagtgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    |||||||||| | || |||||||||| ||| ||| | || ||||  |||||| |||||||| |||||||||||||||||    
T  40257441 gagtgtgctcctcctcgaggtctcaagttcaattctatccggtgtcaatttgggtgggctagtttagcttcttcaaaaa 40257519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 42949326 - 42949248
Alignment:
Q  20 gagtgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    |||||||||| | || ||||||||| ||| |||| |||| ||||  |||||  |||||||||||||||||||| |||||    
T  42949326 gagtgtgctcctcctcgaggtctcatatttgattctctccggtgacaatttaagtgggctaatttagcttctttaaaaa 42949248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 39979126 - 39979203
Alignment:
Q  20 gagtgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaa 97  Q
    |||||||||| | || ||||| ||| |||||||| ||||  |||| |||||| ||| | |||||||||||||||||||    
T  39979126 gagtgtgctcctcctcgaggtatcatattcgattatctcatgtgccaatttgggtgtgttaatttagcttcttcaaaa 39979203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 98
Target Start/End: Original strand, 40810526 - 40810587
Alignment:
Q  37 aggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    ||||||||  ||||||| |||||||||| |||||| | ||| || |||||||||||||||||    
T  40810526 aggtctcaggttcgattctctctggtgccaatttgagagggttagtttagcttcttcaaaaa 40810587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 40814442 - 40814373
Alignment:
Q  20 gagtgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagctt 89  Q
    |||||||||||| |||||||| |||  ||||||| ||||| |||  |||||  |||||||||||||||||    
T  40814442 gagtgtgctcatccttgaggtttcaggttcgattctctctagtgtcaatttaagtgggctaatttagctt 40814373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 234 - 273
Target Start/End: Original strand, 14614396 - 14614436
Alignment:
Q  234 gcgtgagttaactcacgctgag-ttataacctgcgtgagtt 273  Q
    |||||||||||||||||||| | ||||||||||||||||||    
T  14614396 gcgtgagttaactcacgctgggtttataacctgcgtgagtt 14614436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 38 - 98
Target Start/End: Original strand, 44961825 - 44961885
Alignment:
Q  38 ggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    |||||||  ||||||| ||||| |||  |||||| |||||||||||||||||||| |||||    
T  44961825 ggtctcaggttcgattctctctagtgtcaatttgggtgggctaatttagcttcttaaaaaa 44961885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 29431053 - 29431129
Alignment:
Q  20 gagtgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaa 96  Q
    |||||||||| | ||||||| ||||  ||||||| ||| ||||||||||||| ||||||||||||||||||||||||    
T  29431053 gagtgtgctcctccttgaggcctcaggttcgattctctttggtgctaatttgagtgggctaatttagcttcttcaaa 29431129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 173 - 249
Target Start/End: Original strand, 29795754 - 29795832
Alignment:
Q  173 gaaaattgctcttctcccaa--aaaagactttcactctcatacaaactgactaaaatacccccgcgtgagttaactcac 249  Q
    |||||||||||||||| |||  |||| || || |||||||||||||||||| |||||||| ||||||||||||||||||    
T  29795754 gaaaattgctcttctctcaacaaaaaaacgtttactctcatacaaactgaccaaaatacctccgcgtgagttaactcac 29795832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 8485041 - 8485119
Alignment:
Q  20 gagtgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    |||||||||| |  |||||||||||  ||||||| |||| ||||| |||||  ||||||||||||||||||||||||||    
T  8485041 gagtgtgctcctctttgaggtctcattttcgattctctccggtgccaatttaggtgggctaatttagcttcttcaaaaa 8485119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 37 - 98
Target Start/End: Complemental strand, 3305205 - 3305144
Alignment:
Q  37 aggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    ||||||||||||||||| |||||||||| |||||  ||||||||||||| ||||| ||||||    
T  3305205 aggtctcaaattcgattatctctggtgccaatttaggtgggctaatttatcttctgcaaaaa 3305144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 234 - 273
Target Start/End: Complemental strand, 30201901 - 30201862
Alignment:
Q  234 gcgtgagttaactcacgctgagttataacctgcgtgagtt 273  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  30201901 gcgtgagttaactcacgctgacttataacctgcgtgagtt 30201862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 98
Target Start/End: Original strand, 18540357 - 18540418
Alignment:
Q  37 aggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    ||||||||  ||||||| |||||||||| |||||| | ||| ||||||||||||||||||||    
T  18540357 aggtctcaggttcgattctctctggtgccaatttgagagggttaatttagcttcttcaaaaa 18540418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 98
Target Start/End: Original strand, 43866645 - 43866706
Alignment:
Q  37 aggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    ||||||||| ||||||| | ||||||||||||||| |||| ||||||||| ||||| |||||    
T  43866645 aggtctcaagttcgattatgtctggtgctaatttgggtggactaatttagtttcttaaaaaa 43866706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 172 - 248
Target Start/End: Complemental strand, 1410784 - 1410708
Alignment:
Q  172 agaaaattgctcttctcccaaaaaagactttcactctcatacaaactgactaaaatacccccgcgtgagttaactca 248  Q
    ||||||||||||||||||||||||| ||  |||||  |||| ||||| |  |||||||| || ||||||||||||||    
T  1410784 agaaaattgctcttctcccaaaaaaaacactcactgccatataaactaatcaaaatacctccacgtgagttaactca 1410708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 98
Target Start/End: Original strand, 16317679 - 16317730
Alignment:
Q  47 ttcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    ||||||| |||||||||| |||||  |||||||| |||||||||||||||||    
T  16317679 ttcgattctctctggtgccaatttcagtgggctagtttagcttcttcaaaaa 16317730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 98
Target Start/End: Complemental strand, 16585495 - 16585444
Alignment:
Q  47 ttcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    ||||||| |||||| ||| |||||| || |||||||||||||||||||||||    
T  16585495 ttcgattatctctgatgccaatttgagtaggctaatttagcttcttcaaaaa 16585444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 363 - 398
Target Start/End: Original strand, 19923494 - 19923529
Alignment:
Q  363 gagtgagcgttttttgttgggagaagagcaattttc 398  Q
    |||||||| |||||||||||||||||||||||||||    
T  19923494 gagtgagctttttttgttgggagaagagcaattttc 19923529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 251
Target Start/End: Original strand, 27187219 - 27187298
Alignment:
Q  173 gaaaattgctcttctcccaaaaaagactt-tcactctcatacaaactgactaaaatacccccgcgtgagttaactcacgc 251  Q
    |||||||| |||||||||| |||| | |  |||||| ||||||||||||| |||||||||| |||||| |||| ||||||    
T  27187219 gaaaattggtcttctcccataaaaaattactcactcccatacaaactgacaaaaataccccagcgtgatttaagtcacgc 27187298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 98
Target Start/End: Complemental strand, 40791902 - 40791851
Alignment:
Q  47 ttcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    ||||||||||||| |||  |||||  ||||||||||||||||||||||||||    
T  40791902 ttcgattttctctagtgtcaatttaagtgggctaatttagcttcttcaaaaa 40791851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 968404 - 968482
Alignment:
Q  20 gagtgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    |||||||||| | || |||||||||  ||||||| |||| | ||| |||||  |||||||||||||||||||| |||||    
T  968404 gagtgtgctcctcctcgaggtctcaggttcgattctctccgatgccaatttaggtgggctaatttagcttcttaaaaaa 968482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 11819818 - 11819896
Alignment:
Q  20 gagtgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    |||||||||| | ||  ||||||||  |||||||  |||| |||  |||||| ||||||||||||||||||||||||||    
T  11819818 gagtgtgctcctcctcaaggtctcaggttcgattcactctagtgtcaatttgggtgggctaatttagcttcttcaaaaa 11819896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 24675548 - 24675474
Alignment:
Q  18 gagagtgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttctt 92  Q
    |||||||||||| ||||  |||||||| ||||||||||||||| || |||||||  ||  |||||||| ||||||    
T  24675548 gagagtgtgctccttctcaaggtctcagattcgattttctctgatgttaatttggatgaactaatttaacttctt 24675474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 60 - 98
Target Start/End: Original strand, 28783142 - 28783180
Alignment:
Q  60 ggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    ||||| |||||| ||||||||||||||||||||||||||    
T  28783142 ggtgccaatttgggtgggctaatttagcttcttcaaaaa 28783180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 36 - 98
Target Start/End: Complemental strand, 30774754 - 30774692
Alignment:
Q  36 gaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    ||||||||| ||||||||||||| | ||| |||||  ||| |||||||||||||||| |||||    
T  30774754 gaggtctcagattcgattttctccgatgccaatttaagtgagctaatttagcttcttaaaaaa 30774692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 13706274 - 13706209
Alignment:
Q  173 gaaaattgctcttctcccaa-aaaagactttcactctcatacaaactgactaaaatacccccgcgt 237  Q
    ||||||||||||||| |||  |||| || ||||||| |||||||||| || |||||||||||||||    
T  13706274 gaaaattgctcttctaccattaaaaaacgttcactcccatacaaactaaccaaaatacccccgcgt 13706209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 66 - 98
Target Start/End: Complemental strand, 44780102 - 44780070
Alignment:
Q  66 aatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    |||||| ||||||||||||||||||||||||||    
T  44780102 aatttgggtgggctaatttagcttcttcaaaaa 44780070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 28635738 - 28635816
Alignment:
Q  20 gagtgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    |||||||||| | || ||||||| |  ||||||| |||||||||| |||||| ||||||||||||||||||||||||||    
T  28635738 gagtgtgctcctcctggaggtcttaggttcgattctctctggtgccaatttgggtgggctaatttagcttcttcaaaaa 28635816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 47 - 98
Target Start/End: Complemental strand, 37274466 - 37274415
Alignment:
Q  47 ttcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    ||||||| ||||||||||||||||  ||||||||||||||||||||||||||    
T  37274466 ttcgattctctctggtgctaatttaagtgggctaatttagcttcttcaaaaa 37274415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 7949488 - 7949410
Alignment:
Q  20 gagtgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    |||||||||| | ||  ||||||||  ||||||| |||||||||  |||||  ||||||||||||||||||||||||||    
T  7949488 gagtgtgctcctcctcaaggtctcaggttcgattctctctggtgtcaatttaggtgggctaatttagcttcttcaaaaa 7949410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 8030238 - 8030160
Alignment:
Q  20 gagtgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    |||||||||| | ||  ||||||||| |||||||  |||| |||  |||||| ||||||||||||||||||||||||||    
T  8030238 gagtgtgctcctcctcaaggtctcaagttcgattccctctagtgtcaatttgggtgggctaatttagcttcttcaaaaa 8030160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 97
Target Start/End: Complemental strand, 12793918 - 12793868
Alignment:
Q  47 ttcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaa 97  Q
    ||||||| |||||||||| |||||  |||||||||||||||||||||||||    
T  12793918 ttcgattctctctggtgccaatttaggtgggctaatttagcttcttcaaaa 12793868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 250
Target Start/End: Complemental strand, 12828657 - 12828575
Alignment:
Q  171 aagaaaattgctcttctcccaa--aaaagactttcactctcatacaaactgactaaaata-cccccgcgtgagttaactcacg 250  Q
    ||||||||| ||||||||||||  |||| |  ||||||||||||||||||||| |||||| | | | ||||||||||||||||    
T  12828657 aagaaaatttctcttctcccaaccaaaaaatgttcactctcatacaaactgaccaaaatatctctcacgtgagttaactcacg 12828575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 646 - 681
Target Start/End: Complemental strand, 18745561 - 18745526
Alignment:
Q  646 ccatccatcttcatttatgaaagatgataaagaata 681  Q
    ||||||||||| ||||||||||||||||||||||||    
T  18745561 ccatccatctttatttatgaaagatgataaagaata 18745526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 98
Target Start/End: Complemental strand, 29312271 - 29312220
Alignment:
Q  47 ttcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    ||||||| |||||||||| |||||  ||||||||||||||||| ||||||||    
T  29312271 ttcgattctctctggtgccaatttaggtgggctaatttagctttttcaaaaa 29312220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 49262720 - 49262641
Alignment:
Q  18 gagagtgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaa 97  Q
    |||||||||||| || |||||||||||  ||||||| || |  |||| |||||  |||||||||||||| ||||||||||    
T  49262720 gagagtgtgctccttgttgaggtctcaggttcgattctccccagtgccaatttaggtgggctaatttagtttcttcaaaa 49262641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 23377998 - 23378076
Alignment:
Q  20 gagtgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    |||||||||| | ||  ||||||||  ||||||| ||||| |||| |||||| | |||||| |||||||||||||||||    
T  23377998 gagtgtgctcctcctcaaggtctcaggttcgattctctctagtgccaatttgagggggctagtttagcttcttcaaaaa 23378076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 40 - 98
Target Start/End: Complemental strand, 51250536 - 51250478
Alignment:
Q  40 tctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    |||||| |||||||  ||| ||||| |||||| |||||||||||||||||||| |||||    
T  51250536 tctcaagttcgattccctccggtgccaatttgggtgggctaatttagcttcttaaaaaa 51250478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 36 - 98
Target Start/End: Original strand, 51954172 - 51954234
Alignment:
Q  36 gaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    |||||||||  || |||| |||| ||||  |||||| ||||||||||||||||||||||||||    
T  51954172 gaggtctcaggtttgattatctccggtgtcaatttgggtgggctaatttagcttcttcaaaaa 51954234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 98
Target Start/End: Complemental strand, 3350482 - 3350425
Alignment:
Q  41 ctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    ||||| ||||||| |||| |||||| ||||  |||||||||||||||||||| |||||    
T  3350482 ctcaagttcgattatctccggtgctgatttaggtgggctaatttagcttctttaaaaa 3350425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 97
Target Start/End: Complemental strand, 46174402 - 46174341
Alignment:
Q  36 gaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaa 97  Q
    |||||||||  |||||||||||| |||| |||||||  ||| |||||||| |||||||||||    
T  46174402 gaggtctcaggttcgattttctccggtgttaatttggatggactaatttaccttcttcaaaa 46174341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 47386827 - 47386750
Alignment:
Q  18 gagagtgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaa 95  Q
    ||||||| |||  ||||||||||||||  ||| ||| ||||| |||  |||||  |||||||||||||||||||||||    
T  47386827 gagagtgcgcttcttcttgaggtctcaggttcaattctctctagtgtcaatttaggtgggctaatttagcttcttcaa 47386750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 168 - 196
Target Start/End: Complemental strand, 20822103 - 20822075
Alignment:
Q  168 tgtaagaaaattgctcttctcccaaaaaa 196  Q
    |||||||||||||||||||||||||||||    
T  20822103 tgtaagaaaattgctcttctcccaaaaaa 20822075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 354 - 398
Target Start/End: Original strand, 26310410 - 26310454
Alignment:
Q  354 tttgtatgtgagtgagcgttttttgttgggagaagagcaattttc 398  Q
    ||||||||  |||||| ||||||||||||||||| ||||||||||    
T  26310410 tttgtatgaaagtgagtgttttttgttgggagaaaagcaattttc 26310454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 282 - 334
Target Start/End: Complemental strand, 27940483 - 27940431
Alignment:
Q  282 aacgtcgcttaagtcacgttggtttaacacctacgtaagttaactcacgtggg 334  Q
    ||||| ||||||||||||||||||  |||||||||| |||||| |||| ||||    
T  27940483 aacgtggcttaagtcacgttggttacacacctacgtgagttaagtcacatggg 27940431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 51622527 - 51622599
Alignment:
Q  20 gagtgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttctt 92  Q
    |||||||||| | ||  ||||||||  ||||| | |||||||||| |||||| |||||| |||||||||||||    
T  51622527 gagtgtgctcctcctcaaggtctcaggttcgactctctctggtgccaatttgggtgggccaatttagcttctt 51622599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 358 - 398
Target Start/End: Complemental strand, 52073310 - 52073270
Alignment:
Q  358 tatgtgagtgagcgttttttgttgggagaagagcaattttc 398  Q
    |||| ||||| | ||||||||||||||||||||||||||||    
T  52073310 tatgggagtgtgtgttttttgttgggagaagagcaattttc 52073270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 98
Target Start/End: Original strand, 30579394 - 30579455
Alignment:
Q  37 aggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    ||||||||  |||||||||||||||||| |||||  ||||||||||||||||||||||||||    
T  30579394 aggtctcaggttcgattttctctggtgccaatttaggtgggctaatttagcttcttcaaaaa 30579455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 354 - 397
Target Start/End: Original strand, 2169279 - 2169322
Alignment:
Q  354 tttgtatgtgagtgagcgttttttgttgggagaagagcaatttt 397  Q
    |||||||| |||||||||||||||||||||||||||||||||||    
T  2169279 tttgtatgggagtgagcgttttttgttgggagaagagcaatttt 2169322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 354 - 401
Target Start/End: Original strand, 23475744 - 23475791
Alignment:
Q  354 tttgtatgtgagtgagcgttttttgttgggagaagagcaattttccaa 401  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||||    
T  23475744 tttgtatgagagtgagcattttttgttgggagaagagcaattttccaa 23475791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 354 - 401
Target Start/End: Original strand, 23534157 - 23534204
Alignment:
Q  354 tttgtatgtgagtgagcgttttttgttgggagaagagcaattttccaa 401  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||||    
T  23534157 tttgtatgagagtgagcattttttgttgggagaagagcaattttccaa 23534204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 24438281 - 24438203
Alignment:
Q  20 gagtgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    |||||||||| ||||| |||| ||| |||||||| |||||||||  ||||||  ||||||||||||||||||| |||||    
T  24438281 gagtgtgctctttcttaaggtttcagattcgattctctctggtgtcaatttgaatgggctaatttagcttcttaaaaaa 24438203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 41519145 - 41519072
Alignment:
Q  19 agagtgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttctt 92  Q
    ||||||||||| ||||  |||||||| |||||||| |||| ||||  |||||| ||||||||||||||||||||    
T  41519145 agagtgtgctccttctcaaggtctcagattcgattatctccggtgtcaatttgggtgggctaatttagcttctt 41519072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 23301636 - 23301560
Alignment:
Q  20 gagtgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaa 96  Q
    |||||||||| | ||||||||||||| || |||| ||| | ||||||||||| |||| |||||||| ||||||||||    
T  23301636 gagtgtgctcctccttgaggtctcaagtttgattctctttagtgctaatttgagtggactaatttaacttcttcaaa 23301560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 2446350 - 2446428
Alignment:
Q  20 gagtgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    |||||||||| | || ||| |||||| ||||||| |||| |||||  ||||  ||||||||||||||||||||||||||    
T  2446350 gagtgtgctcctcctcgagatctcaagttcgattctctccggtgccgatttaggtgggctaatttagcttcttcaaaaa 2446428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 25132412 - 25132335
Alignment:
Q  20 gagtgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    |||||||||| ||||| ||||||||  ||||||| || |   |||||||||| ||||||||||||||||||||||||||    
T  25132412 gagtgtgctccttcttaaggtctcaggttcgattctcccaa-tgctaatttgggtgggctaatttagcttcttcaaaaa 25132335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 25590653 - 25590731
Alignment:
Q  20 gagtgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    |||||||||| | || ||||||||   |||||||||||  ||||  |||||| ||||||||||||||||||||||||||    
T  25590653 gagtgtgctcctcctcgaggtctcgggttcgattttcttcggtgtcaatttgagtgggctaatttagcttcttcaaaaa 25590731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 98
Target Start/End: Original strand, 21558187 - 21558248
Alignment:
Q  37 aggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    ||||||||  ||||||| |||||||||| |||||  ||||| ||||||||||||||||||||    
T  21558187 aggtctcaggttcgattctctctggtgccaatttaggtgggttaatttagcttcttcaaaaa 21558248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 358 - 398
Target Start/End: Complemental strand, 23443375 - 23443335
Alignment:
Q  358 tatgtgagtgagcgttttttgttgggagaagagcaattttc 398  Q
    |||| ||||||||||||||||||||||||||| ||||||||    
T  23443375 tatgggagtgagcgttttttgttgggagaagaacaattttc 23443335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 34 - 98
Target Start/End: Original strand, 41975943 - 41976007
Alignment:
Q  34 ttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    |||||||||||| ||||||| ||||| |||  |||||  |||||||||||||||||||| |||||    
T  41975943 ttgaggtctcaagttcgattctctctagtgtcaatttaagtgggctaatttagcttcttaaaaaa 41976007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 98
Target Start/End: Complemental strand, 9183198 - 9183147
Alignment:
Q  47 ttcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    ||||||| |||||||||  |||||| |||||||||||||| |||||||||||    
T  9183198 ttcgattatctctggtgtcaatttgggtgggctaatttagtttcttcaaaaa 9183147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 98
Target Start/End: Complemental strand, 11720991 - 11720916
Alignment:
Q  23 tgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    ||||||| | ||| |||| ||| |||||||| || |  |||| |||||| ||||||||||||||||||||||||||    
T  11720991 tgtgctcctccttaaggtatcagattcgattctccccagtgccaatttgggtgggctaatttagcttcttcaaaaa 11720916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 98
Target Start/End: Original strand, 36188920 - 36188971
Alignment:
Q  47 ttcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    |||| |||||||| ||||||||||| |||||||||||||| ||||| |||||    
T  36188920 ttcggttttctctagtgctaatttgagtgggctaatttagtttcttaaaaaa 36188971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 279988 - 279910
Alignment:
Q  20 gagtgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    |||||| ||| | ||| ||||||||  ||| ||| |||| ||||| |||||| |||||||||||||||||||| |||||    
T  279988 gagtgtactcctccttaaggtctcaggttcaattctctccggtgccaatttgggtgggctaatttagcttcttaaaaaa 279910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 15137595 - 15137673
Alignment:
Q  20 gagtgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    |||||||||| | ||  ||||||||  || |||| |||||||||  |||||| |||||||||||||| |||||||||||    
T  15137595 gagtgtgctcctcctcaaggtctcaggttagattctctctggtgtcaatttgggtgggctaatttagtttcttcaaaaa 15137673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 352 - 398
Target Start/End: Complemental strand, 23474975 - 23474929
Alignment:
Q  352 aatttgtatgtgagtgagcgttttttgttgggagaagagcaattttc 398  Q
    ||||| |||| ||| ||||||||||||||||||||||| ||||||||    
T  23474975 aatttttatgggagagagcgttttttgttgggagaagaacaattttc 23474929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 24107348 - 24107426
Alignment:
Q  20 gagtgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    |||||||||| |||| ||| ||||||||| |||| ||||  || ||| ||||  ||| |||||||||||||||||||||    
T  24107348 gagtgtgctccttctcgagatctcaaattggattctctccagtactattttggatggactaatttagcttcttcaaaaa 24107426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 36 - 98
Target Start/End: Original strand, 48079701 - 48079763
Alignment:
Q  36 gaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    |||||||||  || |||| |||| |||||||||||| ||||||||||||||||| || |||||    
T  48079701 gaggtctcaggtttgattctctccggtgctaatttgagtgggctaatttagcttattaaaaaa 48079763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 370 - 399
Target Start/End: Complemental strand, 1505571 - 1505542
Alignment:
Q  370 cgttttttgttgggagaagagcaattttcc 399  Q
    ||||||||||||||||||||||||||||||    
T  1505571 cgttttttgttgggagaagagcaattttcc 1505542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 98
Target Start/End: Complemental strand, 5668604 - 5668527
Alignment:
Q  21 agtgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    ||||||||| | || |||||||||   |||||| |||| || | ||||||  ||||||||||||||||||||||||||    
T  5668604 agtgtgctcctcctcgaggtctcaggatcgattctctccggagttaatttatgtgggctaatttagcttcttcaaaaa 5668527  T

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Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 7309398 - 7309474
Alignment:
Q  20 gagtgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaa 97  Q
    |||||||||| | || |||||||||| ||||||| |||| | ||  |||||  |||||||||||||||||||||||||    
T  7309398 gagtgtgctcctcctcgaggtctcaagttcgattctctccg-tgtcaatttaagtgggctaatttagcttcttcaaaa 7309474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 17113854 - 17113911
Alignment:
Q  37 aggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttca 94  Q
    ||||||||| ||||||| |||||| |||||||||| | ||| || |||||||||||||    
T  17113854 aggtctcaagttcgattctctctgatgctaatttgagggggttagtttagcttcttca 17113911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 314 - 398
Target Start/End: Complemental strand, 23533349 - 23533269
Alignment:
Q  314 acgtaagttaactcacgtgg-gcgtattttggtcagtttaatttgtatgtgagtgagcgttttttgttgggagaagagcaattttc 398  Q
    |||| ||||||||||||||| | |||||||||| |||||      |||| |||||||| |||||||||||||||||| ||||||||    
T  23533349 acgtgagttaactcacgtggtgggtattttggtaagtttt-----tatgggagtgagcattttttgttgggagaagaacaattttc 23533269  T

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Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 98
Target Start/End: Original strand, 24513852 - 24513917
Alignment:
Q  33 cttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    ||||||||||||  |||||||||| ||| ||  |||||| ||||||||||||| |||||| |||||    
T  24513852 cttgaggtctcaggttcgattttcactgatgtcaatttgggtgggctaatttaacttctttaaaaa 24513917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 98
Target Start/End: Complemental strand, 27313751 - 27313690
Alignment:
Q  37 aggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    |||| ||| |||||||| |||||| ||| |||||  ||| ||||||||||||||||||||||    
T  27313751 aggtttcagattcgattctctctgatgccaatttaggtgagctaatttagcttcttcaaaaa 27313690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 60 - 96
Target Start/End: Complemental strand, 3968648 - 3968612
Alignment:
Q  60 ggtgctaatttgcgtgggctaatttagcttcttcaaa 96  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  3968648 ggtgccaatttgggtgggctaatttagcttcttcaaa 3968612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 13106799 - 13106747
Alignment:
Q  37 aggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagctt 89  Q
    ||||||||  ||||||| |||||| |||||||||| | |||||||||||||||    
T  13106799 aggtctcaggttcgattctctctgatgctaatttgagcgggctaatttagctt 13106747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 358 - 398
Target Start/End: Original strand, 23457459 - 23457499
Alignment:
Q  358 tatgtgagtgagcgttttttgttgggagaagagcaattttc 398  Q
    |||| |||||||||||||||||| |||||||| ||||||||    
T  23457459 tatgggagtgagcgttttttgtttggagaagaacaattttc 23457499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 237 - 273
Target Start/End: Original strand, 42602640 - 42602676
Alignment:
Q  237 tgagttaactcacgctgagttataacctgcgtgagtt 273  Q
    |||||||||||||||||||||||||||| | ||||||    
T  42602640 tgagttaactcacgctgagttataacctacatgagtt 42602676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 23 - 98
Target Start/End: Original strand, 6385907 - 6385982
Alignment:
Q  23 tgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    ||||||| | ||| ||||||||  ||||||| |||| |||||||||||| |||||||||||||||||||| |||||    
T  6385907 tgtgctcctccttaaggtctcaggttcgattctctccggtgctaatttgggtgggctaatttagcttcttaaaaaa 6385982  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 89
Target Start/End: Complemental strand, 3172786 - 3172733
Alignment:
Q  36 gaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagctt 89  Q
    ||||||||| |||||||||||| | ||| ||||||| |||||||||||||||||    
T  3172786 gaggtctcagattcgattttctttagtgttaatttgggtgggctaatttagctt 3172733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 98
Target Start/End: Complemental strand, 8597764 - 8597703
Alignment:
Q  37 aggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    ||||||||| ||| ||| ||||  |||| |||||| ||||||||||||||||||||||||||    
T  8597764 aggtctcaagttcaattctctccagtgccaatttgggtgggctaatttagcttcttcaaaaa 8597703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 252
Target Start/End: Original strand, 5449485 - 5449568
Alignment:
Q  173 gaaaattgctcttctcc---caaaaaagactttcactctcatacaaactgactaaaataccc--ccgcgtgagttaactcacgct 252  Q
    |||||||||||||||||   |||||||| | ||||||| ||||||||||||| ||||| |||  ||||||||||||| |||||||    
T  5449485 gaaaattgctcttctccaaacaaaaaag-cgttcactcccatacaaactgaccaaaatgcccttccgcgtgagttaattcacgct 5449568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 172 - 230
Target Start/End: Original strand, 1706589 - 1706647
Alignment:
Q  172 agaaaattgctcttctcccaaaaaagactttcactctcatacaaactgactaaaatacc 230  Q
    ||||||||||||||||||||| ||| ||  ||||| |||||||||||||  ||||||||    
T  1706589 agaaaattgctcttctcccaataaaaacgctcactttcatacaaactgatcaaaatacc 1706647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 36 - 98
Target Start/End: Complemental strand, 6758440 - 6758378
Alignment:
Q  36 gaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    ||||||||||  |||||| |||||||||  |||||  |||||| |||||||||||||||||||    
T  6758440 gaggtctcaagatcgattctctctggtgtcaatttaggtgggcaaatttagcttcttcaaaaa 6758378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 28363979 - 28364057
Alignment:
Q  20 gagtgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    |||||||||| | ||  |||||||| |||||||| |||||||||  ||||||  ||||||||||||  |||||||||||    
T  28363979 gagtgtgctcctcctcaaggtctcagattcgattatctctggtgtcaatttggatgggctaatttaatttcttcaaaaa 28364057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 206 - 252
Target Start/End: Complemental strand, 34397048 - 34397003
Alignment:
Q  206 tctcatacaaactgactaaaatacccccgcgtgagttaactcacgct 252  Q
    |||||||||||||||||||||||  |||||||||||||| |||||||    
T  34397048 tctcatacaaactgactaaaata-tcccgcgtgagttaattcacgct 34397003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 98
Target Start/End: Original strand, 34444862 - 34444923
Alignment:
Q  37 aggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    ||||||||  ||||||| || |||| |||| |||| |||||||||||||||||||| |||||    
T  34444862 aggtctcaggttcgattctccctggagctagtttgagtgggctaatttagcttcttaaaaaa 34444923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 354 - 398
Target Start/End: Complemental strand, 4974735 - 4974691
Alignment:
Q  354 tttgtatgtgagtgagcgttttttgttgggagaagagcaattttc 398  Q
    ||||||||  |||||||||||||||||  ||||||||||||||||    
T  4974735 tttgtatggaagtgagcgttttttgttaagagaagagcaattttc 4974691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 66 - 98
Target Start/End: Original strand, 20213129 - 20213161
Alignment:
Q  66 aatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    |||||| ||||||||||||||||||||||||||    
T  20213129 aatttgggtgggctaatttagcttcttcaaaaa 20213161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 66 - 98
Target Start/End: Original strand, 22107152 - 22107184
Alignment:
Q  66 aatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    |||||| ||||||||||||||||||||||||||    
T  22107152 aatttgggtgggctaatttagcttcttcaaaaa 22107184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 24256856 - 24256780
Alignment:
Q  20 gagtgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaa 96  Q
    |||| ||||||||||  ||||||||| ||||||| |||||||||  |||||  || || || |||||||||||||||    
T  24256856 gagtatgctcattctcaaggtctcaagttcgattctctctggtgtcaatttaggtaggttagtttagcttcttcaaa 24256780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 66 - 98
Target Start/End: Complemental strand, 31622979 - 31622947
Alignment:
Q  66 aatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    |||||| ||||||||||||||||||||||||||    
T  31622979 aatttgggtgggctaatttagcttcttcaaaaa 31622947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 15357 - 15281
Alignment:
Q  20 gagtgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaa 96  Q
    |||||||||| | || |||||||||  ||||||| |||| | ||| |||||  ||||||||||||||||||||||||    
T  15357 gagtgtgctcctcctcgaggtctcaggttcgattctctcggatgccaatttaggtgggctaatttagcttcttcaaa 15281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 99
Target Start/End: Complemental strand, 25381 - 25302
Alignment:
Q  20 gagtgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaag 99  Q
    |||||||||| ||||  ||||||||  ||||||| |||||||||  ||||||  || |||| ||||||||||||||||||    
T  25381 gagtgtgctccttctcaaggtctcaggttcgattatctctggtgtcaatttgaatgagctattttagcttcttcaaaaag 25302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 98
Target Start/End: Complemental strand, 6921 - 6878
Alignment:
Q  55 tctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    |||||||||  |||||| ||||||||||||||||||||||||||    
T  6921 tctctggtgtcaatttgagtgggctaatttagcttcttcaaaaa 6878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0368 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0368
Description:

Target: scaffold0368; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 14999 - 14921
Alignment:
Q  20 gagtgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    |||||||||| | || ||||||||| ||| |||| |||| ||||  |||||  |||||||||||||||||||| |||||    
T  14999 gagtgtgctcctcctcgaggtctcatatttgattctctccggtgacaatttaagtgggctaatttagcttctttaaaaa 14921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0260 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0260
Description:

Target: scaffold0260; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 364 - 398
Target Start/End: Original strand, 20559 - 20593
Alignment:
Q  364 agtgagcgttttttgttgggagaagagcaattttc 398  Q
    ||||||||||||||||||||| |||||||||||||    
T  20559 agtgagcgttttttgttgggaaaagagcaattttc 20593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 19881 - 19803
Alignment:
Q  20 gagtgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    |||| ||||| | ||||||||||||| ||||||| | || | || ||||||| |||||||| ||||||||||| |||||    
T  19881 gagtctgctcctccttgaggtctcaagttcgattctttccgatgttaatttgggtgggctagtttagcttcttaaaaaa 19803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 41669 - 41589
Alignment:
Q  18 gagagtgtgctcattcttgaggtctcaaattcgattttctctggtgctaatttgcgtgggctaatttagcttcttcaaaaa 98  Q
    |||||| ||||| | || |||||||||  ||| ||| |||||| ||  |||||| ||||||||||||||| ||||||||||    
T  41669 gagagtatgctcctcctcgaggtctcaggttcaattctctctgatgtcaatttgggtgggctaatttagcctcttcaaaaa 41589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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