View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3055_low_8 (Length: 670)
Name: NF3055_low_8
Description: NF3055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3055_low_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 493; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 67 - 659
Target Start/End: Original strand, 39231812 - 39232404
Alignment:
| Q |
67 |
attggtagtgtgacatggacgaatggtggtttcatgttggatgtcacacttgctgtgtatgtccattaaacttcttttgaataaaatttaattcaattat |
166 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39231812 |
attggtagtgtgacatggacgaatggtggtttctcgttggatgtcacacttgctgcgtatgtccattaaacttcttttgaataaaatttaattcaattat |
39231911 |
T |
|
| Q |
167 |
gtgtatgttcctacttatttaatttttgggcatatgaaagtttgttaattaataatatgcttgctttggattgctctgaaacacnnnnnnnatgatctca |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
39231912 |
gtgtatgttcctacttatttaatttttgggcatatggaagtttgttaattaataatatgcttgctttggattgctctgaaacactttttttatgatctca |
39232011 |
T |
|
| Q |
267 |
atggttacacgttgattgtgaatatgatctttttatgatctcaatggttacatgttgattgtgaatatgatctcaatggttatgtgttgattgtgaattt |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
39232012 |
atggttacacgttgattgtgaatatgatctttttatgatctcaatggttacatgttgattgtgaatatgatctcaatggttatgtgttgaatgtgaattt |
39232111 |
T |
|
| Q |
367 |
atggttggcagatattaggcatttgccttttgttgaatgtatagtgacaatttataaaagcttggatgcgaccttttgtgcaaacgcttttcagcaacgt |
466 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39232112 |
atgggtggcagatattaggcatttgccttttgttgaaagtatagtgacaatttataaaagcttggatgcgaccttttgtgcaaacgcttttcagcaacgt |
39232211 |
T |
|
| Q |
467 |
tcttctggttagttcgtttccttttgcatttgttgagaaatgagaaaaatctagcttattgcttgatgctgatttgacatgnnnnnnnnnggttatttta |
566 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
39232212 |
tcttctggtgagttcgtttccttttgcatttgttgagaaatgagaaaaatctagcttattgcttgatgatgatttgacatgttttttttttgttatttta |
39232311 |
T |
|
| Q |
567 |
ttaatgtagataatacgagggttttggagcagtgccaaactattcacaattcagcttttagtaataaggttgacaaggttctgaagaattcat |
659 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
39232312 |
ttaatgtagataatacgagggttttggagcagtgccaaactcttcacaattcagcttttagtaataaggttgataaggttctgcagaattcat |
39232404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 39231563 - 39231616
Alignment:
| Q |
17 |
gaaaatccaatatttgtcatatcaccctgcttttgtatggttagttttgaattg |
70 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39231563 |
gaaaatccaatatttgtcatatcaccctgcttttgtatggttagttttgaattg |
39231616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University