View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3055_low_9 (Length: 654)
Name: NF3055_low_9
Description: NF3055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3055_low_9 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 554; Significance: 0; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 17 - 640
Target Start/End: Original strand, 27045436 - 27046071
Alignment:
| Q |
17 |
aaattcactgattcataccctccaaaatctatactattttcatcaacaaaacctaaatgcttccactcagtcagaatcgttaccgcaccgctaccgtcca |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27045436 |
aaattcactgattcataccctccaaaatctatattattttcatcaacaaaacctaaatgcttccactcagtcagaatcgttaccgcaccgctaccgtcca |
27045535 |
T |
|
| Q |
117 |
tgctaaaatcttgcttatgctccgtcttcggagtgtgatcgatcgagtttttgacataatcagtggaggaagcaatctttttagcctctttgatcaactt |
216 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27045536 |
tgctaaaatcttgcttatgctccgtctccggagtgtgatcgatcgagtttttgacataatcagtggaggaagcaatctttttagcctctttgatcaactt |
27045635 |
T |
|
| Q |
217 |
aacaatttcatagagtggcatttcattgagctcactaacttttaacacaacttttccatccacagtagtattaccataataccctataggcaaaggatca |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27045636 |
aacaatttcatagagtggcatttcattgagctcactaacttttaacacaacttttccatccacagtagtattaccataataccctataggcaaaggatca |
27045735 |
T |
|
| Q |
317 |
taacctttcatgctgcgtctaataccaactaacatattcaacattgtttttccattgttgctaagttgtaaggctcttgctcttgacctccacacataag |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27045736 |
taacctttcatgctgcgtctaataccaactaacatattcaacattgtttttccattgttgctaagttgtaaggctcttgctcttgacctccacacataag |
27045835 |
T |
|
| Q |
417 |
caccaagtgactcataagttgtaactggttcactttcactatcaccttccttcatcaaactcatcttaagnnnnnnnatcacctcattctcaaccttaaa |
516 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
27045836 |
caccaagtgactcataagttgtaactggttcactttcactaccaccttccttcatcaaactcatcttaagtctttttatcacctcattctcaaccttaaa |
27045935 |
T |
|
| Q |
517 |
acaatagattttaataactgtttctggttgaactaaaggtgaaaatgcaataggttcttttggtt------------gaagtggttgtttggtacttgtt |
604 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
27045936 |
acaatagattttaataactgtttttggttgaactaaaggtgaaaatgcaataggttcttttggttgaagtaatggtggaagtggttgtttggtacttgtt |
27046035 |
T |
|
| Q |
605 |
gaagcaccaactagtctctctctttcccacacaggt |
640 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |
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|
| T |
27046036 |
gaagccccaactagtctctctctttcccacacaggt |
27046071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 170 - 415
Target Start/End: Original strand, 27069598 - 27069843
Alignment:
| Q |
170 |
acataatcagtggaggaagcaatctttttagcctctttgatcaacttaacaatttcatagagtggcatttcattgagctcactaacttttaacacaactt |
269 |
Q |
| |
|
||||||||||||| | ||| ||| ||||||| |||||| |||| ||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||| |
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|
| T |
27069598 |
acataatcagtggtgaaagaaatatttttagtctctttaatcagcttaacaatttcatagagtggcatttcatcgagctcactcacttttaaaacaactt |
27069697 |
T |
|
| Q |
270 |
ttccatccacagtagtattaccataataccctataggcaaaggatcataacctttcatgctgcgtctaataccaactaacatattcaacattgtttttcc |
369 |
Q |
| |
|
|| |||||| |||| ||| || ||||||||| | || |||| |||| || | ||| | | ||||| ||||||||||||||||||| ||||||||| | |
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|
| T |
27069698 |
ttgcatccatggtagaattcccgtaataccctttcggtaaagtatcaaaatccatcaagttacgtctcataccaactaacatattcagcattgttttatc |
27069797 |
T |
|
| Q |
370 |
attgttgctaagttgtaaggctcttgctcttgacctccacacataa |
415 |
Q |
| |
|
|||| ||||||| | ||||||||||||||||||||||||||||||| |
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|
| T |
27069798 |
attgctgctaagctttaaggctcttgctcttgacctccacacataa |
27069843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 161 - 415
Target Start/End: Original strand, 27062522 - 27062776
Alignment:
| Q |
161 |
gagtttttgacataatcagtggaggaagcaatctttttagcctctttgatcaacttaacaatttcatagagtggcatttcattgagctcactaactttta |
260 |
Q |
| |
|
|||||| | |||||||||| | | ||||||| ||||||| |||||| |||| |||||| |||| ||||||||||||||||| ||| ||||| ||||||| |
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|
| T |
27062522 |
gagtttcttacataatcagcagtgaaagcaatatttttagtctctttaatcagcttaacgattttatagagtggcatttcatcgagttcactcactttta |
27062621 |
T |
|
| Q |
261 |
acacaacttttccatccacagtagtattaccataataccctataggcaaaggatcataacctttcatgctgcgtctaataccaactaacatattcaacat |
360 |
Q |
| |
|
| ||||||||| |||| | |||| ||| |||||||||||| |||| |||| |||||| | ||| | | ||||| ||||||||||||| ||| | ||| |
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|
| T |
27062622 |
aaacaacttttgcatctatggtagaattgccataataccctttaggtaaagtttcataatccatcaagtttcgtctgataccaactaacacatttagcat |
27062721 |
T |
|
| Q |
361 |
tgtttttccattgttgctaagttgtaaggctcttgctcttgacctccacacataa |
415 |
Q |
| |
|
|||||| ||||| ||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
27062722 |
tgttttgtcattgctgctaagttttaaggctcttgctcttgacctccacacataa |
27062776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 161 - 415
Target Start/End: Original strand, 27056480 - 27056734
Alignment:
| Q |
161 |
gagtttttgacataatcagtggaggaagcaatctttttagcctctttgatcaacttaacaatttcatagagtggcatttcattgagctcactaactttta |
260 |
Q |
| |
|
|||||| |||||||||||| | ||||||| ||||||| |||||| |||| ||||||||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
27056480 |
gagtttgtgacataatcagcaatgaaagcaatatttttagtctctttaatcagcttaacaatttcatagagtggcatttcgttgagctcactcactttta |
27056579 |
T |
|
| Q |
261 |
acacaacttttccatccacagtagtattaccataataccctataggcaaaggatcataacctttcatgctgcgtctaataccaactaacatattcaacat |
360 |
Q |
| |
|
| ||||| ||| |||| | ||||| ||| ||||| |||||| |||| |||| ||||||| | | || | ||||||||||||||||| || ||| || |
|
|
| T |
27056580 |
aaacaacatttacatctatagtagaatttccatattaccctttaggtaaagtatcataatcctccaagttgcgtctaataccaactgcaatggtcagcac |
27056679 |
T |
|
| Q |
361 |
tgtttttccattgttgctaagttgtaaggctcttgctcttgacctccacacataa |
415 |
Q |
| |
|
||||| |||||| || |||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
27056680 |
tgtttcaccattgctgttaagttttaaggctcttgctcttgacctctacacataa |
27056734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 164 - 415
Target Start/End: Original strand, 27098314 - 27098565
Alignment:
| Q |
164 |
tttttgacataatcagtggaggaagcaatctttttagcctctttgatcaacttaacaatttcatagagtggcatttcattgagctcactaacttttaaca |
263 |
Q |
| |
|
||||||||| ||||||||| ||||||||| ||||||| |||| |||| | ||||| |||||||||||||||| |||||| |||||||||||||||||||| |
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|
| T |
27098314 |
tttttgacaaaatcagtggtggaagcaatgtttttagtctctctgatgagcttaataatttcatagagtggcctttcatcgagctcactaacttttaaca |
27098413 |
T |
|
| Q |
264 |
caacttttccatccacagtagtattaccataataccctataggcaaaggatcataacctttcatgctgcgtctaataccaactaacatattcaacattgt |
363 |
Q |
| |
|
|| ||| |||| ||| | ||| |||||||| || |||| ||||||||| || | |||| | ||||||||||||| ||| || ||| | ||| |
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|
| T |
27098414 |
cagtgtttgcatcaacacatgaattcccataataaccattaggtaaaggatcaaaatccttcaagttgcgtctaatacctgctacaatggtcagtactgt |
27098513 |
T |
|
| Q |
364 |
ttttccattgttgctaagttgtaaggctcttgctcttgacctccacacataa |
415 |
Q |
| |
|
|| |||||| || |||||| |||||||||||||||||| ||||| |||||| |
|
|
| T |
27098514 |
ttcaccattgctgttaagttttaaggctcttgctcttgatctccaaacataa |
27098565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 164 - 415
Target Start/End: Original strand, 27105313 - 27105564
Alignment:
| Q |
164 |
tttttgacataatcagtggaggaagcaatctttttagcctctttgatcaacttaacaatttcatagagtggcatttcattgagctcactaacttttaaca |
263 |
Q |
| |
|
||||||| | ||||||||| ||||||||| ||||||| |||| | || | |||| |||||||||||||||| |||||| |||||| ||||||||||||| |
|
|
| T |
27105313 |
tttttgataaaatcagtggtggaagcaatgtttttagtctctcttattaggttaataatttcatagagtggcctttcatcgagctcgctaacttttaaca |
27105412 |
T |
|
| Q |
264 |
caacttttccatccacagtagtattaccataataccctataggcaaaggatcataacctttcatgctgcgtctaataccaactaacatattcaacattgt |
363 |
Q |
| |
|
|| ||| |||| ||| | ||| |||||||| || |||| ||||| ||| || | |||| |||||||||||||| ||| || |||||| ||| |
|
|
| T |
27105413 |
cagtgtttgcatcaacacatgaattcccataataaccattaggtaaaggttcaaaatccttcaacttgcgtctaataccagctacaatggtcaacactgt |
27105512 |
T |
|
| Q |
364 |
ttttccattgttgctaagttgtaaggctcttgctcttgacctccacacataa |
415 |
Q |
| |
|
|| ||||||||| |||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
27105513 |
ttcaccattgttgttaagttttaaggctcttgctcttgatctccacacataa |
27105564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 161 - 415
Target Start/End: Original strand, 27085645 - 27085899
Alignment:
| Q |
161 |
gagtttttgacataatcagtggaggaagcaatctttttagcctctttgatcaacttaacaatttcatagagtggcatttcattgagctcactaactttta |
260 |
Q |
| |
|
|||||| | |||||||||| | | ||||||| ||||||| |||||| |||| ||||| ||||||||||||||||||| |||||| |||| ||||||| |
|
|
| T |
27085645 |
gagtttgtaacataatcagcagtgaaagcaatatttttagtctctttaatcagcttaatggtttcatagagtggcatttcgttgagcacactcactttta |
27085744 |
T |
|
| Q |
261 |
acacaacttttccatccacagtagtattaccataataccctataggcaaaggatcataacctttcatgctgcgtctaataccaactaacatattcaacat |
360 |
Q |
| |
|
| ||||| ||| |||| | | ||| ||| |||||||||||| |||| |||| ||||||| | || | | |||||||| |||||||| || | | | |
|
|
| T |
27085745 |
aaacaacatttacatctataatagaattcccataataccctttaggtaaagtatcataatcctttaagttgcgtctactaccaactgcaatggttagcgc |
27085844 |
T |
|
| Q |
361 |
tgtttttccattgttgctaagttgtaaggctcttgctcttgacctccacacataa |
415 |
Q |
| |
|
|||| |||||| | |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
27085845 |
tgttaaaccattgcttttaagttttaaggctcttgctcttgacctccacacataa |
27085899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 161 - 301
Target Start/End: Original strand, 27041208 - 27041348
Alignment:
| Q |
161 |
gagtttttgacataatcagtggaggaagcaatctttttagcctctttgatcaacttaacaatttcatagagtggcatttcattgagctcactaactttta |
260 |
Q |
| |
|
|||||| | |||||||||| | | ||||||| ||||||| |||||| |||| ||||| ||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
27041208 |
gagtttgtaacataatcagcagtgaaagcaatatttttagtctctttaatcagcttaatggtttcatagagtggcatttcgttgagctcactcactttta |
27041307 |
T |
|
| Q |
261 |
acacaacttttccatccacagtagtattaccataataccct |
301 |
Q |
| |
|
| ||||| ||| |||| | ||||| ||| |||||||||||| |
|
|
| T |
27041308 |
aaacaacatttacatctatagtagaatttccataataccct |
27041348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 354 - 415
Target Start/End: Original strand, 27041360 - 27041421
Alignment:
| Q |
354 |
tcaacattgtttttccattgttgctaagttgtaaggctcttgctcttgacctccacacataa |
415 |
Q |
| |
|
|||||| ||||| |||||| || |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
27041360 |
tcaacactgtttcaccattgctgttaagttttaaggctcttgctcttgacctccacacataa |
27041421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 17 - 106
Target Start/End: Original strand, 27105172 - 27105258
Alignment:
| Q |
17 |
aaattcactgattcataccctccaaaatctatactattttcatcaacaaaacctaaatgcttccactcagtcagaatcgttaccgcaccg |
106 |
Q |
| |
|
|||||||||| ||||| ||| |||||||||| | ||| |||||| |||||||||||| |||||||| ||||||| |||||| |||||| |
|
|
| T |
27105172 |
aaattcactgcttcatgcccaccaaaatctaca---tttccatcaagaaaacctaaatgtttccactctgtcagaaccgttactgcaccg |
27105258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 27098173 - 27098258
Alignment:
| Q |
17 |
aaattcactgattcataccctccaaaatctatactattttcatcaacaaaacctaaatgcttccactcagtcagaatcgttaccgcacc |
105 |
Q |
| |
|
|||||||||| ||| | ||| |||||||||| | ||| |||||| |||||||||||| |||||||| ||||||| |||||| ||||| |
|
|
| T |
27098173 |
aaattcactgcttcgttcccaccaaaatctaca---tttccatcaagaaaacctaaatgtttccactctgtcagaaccgttactgcacc |
27098258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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