View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3056-2-Insertion-12 (Length: 455)
Name: NF3056-2-Insertion-12
Description: NF3056-2
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3056-2-Insertion-12 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 109 - 455
Target Start/End: Original strand, 9391742 - 9392088
Alignment:
| Q |
109 |
ttgcacttttgcaatacttaatatgtgttaggattttgtcttgatcattgattcttttctttccatttcaggaacatgtttacatgagtgttacccatgt |
208 |
Q |
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| T |
9391742 |
ttgcacttttgcaatacttaatatgtgttaggattttgtcttgatctttgattcttttctttccatttcagtaacatgtttacatgagtgttacccatgt |
9391841 |
T |
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| Q |
209 |
tcctttgattaatatatgatttcttagtttcctctgatgttgttattccttgaactttgggttgtgttttgttatttctaaattaattctaaccgtatat |
308 |
Q |
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| T |
9391842 |
tcctttgattaatatatgatttcttagtttcctctgatgttgttattccttgaactttgggttgtgttttgttatttctaaattaattctaaccgtatat |
9391941 |
T |
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| Q |
309 |
ttgtgttatgagctaaataagggttgttaggacacatctcttattgtgtttgttcgagtgtagtttgtttgttgttcaaggaagtatgggttgtggttta |
408 |
Q |
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| T |
9391942 |
ttgtgttatgagctaaataagggttgttaggacacatctcttattgtgtttgttcgagtgtagtttgtttgttgttcaaggaagtatgggttgtggttta |
9392041 |
T |
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| Q |
409 |
atgtggattagaacttctaccttgatcgtgatattggttttatttta |
455 |
Q |
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| T |
9392042 |
atgtggattagaacttctatcttgatcgtgatattggttttatttta |
9392088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 9391592 - 9391653
Alignment:
| Q |
8 |
gaaataaccctaagctctatataaatgatatttttcacttccttaattcatttccatgaatc |
69 |
Q |
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| T |
9391592 |
gaaataaccctaagctctatataaatgatatttttcacttccttaattcatttccatgaatc |
9391653 |
T |
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