View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3056-2-Insertion-14 (Length: 474)
Name: NF3056-2-Insertion-14
Description: NF3056-2
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3056-2-Insertion-14 |
 | |
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| [»] chr5 (10 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 452; Significance: 0; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 7 - 474
Target Start/End: Original strand, 19493528 - 19493995
Alignment:
| Q |
7 |
acgttgttcccgattctccatcctttgatgtcgaatccgagggttcactcaactcactaactgtcaacggcacccaactcacagccgagtttaacatttc |
106 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19493528 |
acgttgttcccgattctccatccttcgatgtcgaatccgagggttcactcaactcactaactgtcaacggcacccaactcacagccgagtttaacatttc |
19493627 |
T |
|
| Q |
107 |
ggtctccggatataacttaaaatcgtattcccgtgtgtattacgatgatgtctctgcggagatcttttacagaggtgaaggtgtcgttctaaccaaatca |
206 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19493628 |
ggtctccggatataacttcaaatcgtattcccgtgtgtattacgatgatgtctctgcggagatcttttacagaggtgaaggtgtcgttctaaccaaatca |
19493727 |
T |
|
| Q |
207 |
tctcttccatctttcaccaccgatggaaagagtgagagtgtgattcatttgacgctttccgtgaataagtctgatgatttcggtggcgctgcgaccggta |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
19493728 |
tctcttccatctttcaccaccgatggaaagagtgagagtgtgattcatttgacgctttccgtgaataagtctgatgatttcggtggcgctgcgactggta |
19493827 |
T |
|
| Q |
307 |
ttgctcggagccgcaaagatggaacggtagaatttgggctaattgtgaagtctttgtttaagtacaaaaacaggtgggctcagtccgactggaggcctat |
406 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19493828 |
ttgctcggagccgcaaagatggaacggtggaatttgggctaattgtgaagtctttgtttaagtacaaaaacaggtgggctcagtccgactggaggcctat |
19493927 |
T |
|
| Q |
407 |
gaaggttgtttgcaacccactcaagtttgcagtttctccaaatgacaacaacacaacaaaccctggga |
474 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19493928 |
gaaggttgtttgcaacccactcaagtttgcagtttctccaaatgacaacaacacaacaaaccctggga |
19493995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 36 - 472
Target Start/End: Original strand, 19530498 - 19530934
Alignment:
| Q |
36 |
gtcgaatccgagggttcactcaactcactaactgtcaacggcacccaactcacagccgagtttaacatttcggtctccggatataacttaaaatcgtatt |
135 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||| |||||| ||||| || |||||||| | |||||||||||||| | |||||| | | |||| |
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|
| T |
19530498 |
gtcgactccgtgggttcactcaactcactaactgttaacggcccccaattctcagccgagctcaacatttcggtctcggcctataaccccacagactatt |
19530597 |
T |
|
| Q |
136 |
cccgtgtgtattacgatgatgtctctgcggagatcttttacagaggtgaaggtgtcgttctaaccaaatcatctcttccatctttcaccaccgatggaaa |
235 |
Q |
| |
|
| ||| |||||||| | ||||||||||||| |||||||| ||||||||||| | ||||||| |||| ||||||| |||||||||||||| || | | |
|
|
| T |
19530598 |
cttgtgcctattacgaggctgtctctgcggaggtcttttacggaggtgaaggtctggttctaagcaaaacatctctgccatctttcaccacgcatagcca |
19530697 |
T |
|
| Q |
236 |
gagtgagagtgtgattcatttgacgctttccgtgaataagtctgatgatttcggtggcgctgcgaccggtattgctcggagccgcaaagatggaacggta |
335 |
Q |
| |
|
||| || ||||| | |||| || | || || ||||||||||||||||| || | || |||| ||||||| |||||||||| |||||| ||| |
|
|
| T |
19530698 |
gagcactagcgtgatgaagatgacactattggttaacaagtctgatgatttcggaggtgtggccaccgccattgctcagagccgcaaaaatggaatggtg |
19530797 |
T |
|
| Q |
336 |
gaatttgggctaattgtgaagtctttgtttaagtacaaaaacaggtgggctcagtccgactggaggcctatgaaggttgtttgcaacccactcaagtttg |
435 |
Q |
| |
|
|| |||||||| |||||| |||||||||||||||| |||||||||| ||||||| | |||| || | |||| ||||||||| ||||||||||||| |
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|
| T |
19530798 |
gagtttgggctgattgtgtcagctttgtttaagtacaagaacaggtgggatcagtccaaatggacatctttaaaggctgtttgcaaaccactcaagtttg |
19530897 |
T |
|
| Q |
436 |
cagtttctccaaatgacaacaacacaacaaaccctgg |
472 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
19530898 |
cagtttctccaaatgactacaacacaacaatccctgg |
19530934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 306 - 474
Target Start/End: Original strand, 19523730 - 19523898
Alignment:
| Q |
306 |
attgctcggagccgcaaagatggaacggtagaatttgggctaattgtgaagtctttgtttaagtacaaaaacaggtgggctcagtccgactggaggccta |
405 |
Q |
| |
|
||||||| |||||||||| |||||| ||| || |||||||| |||||| | |||||||||||||||| |||||||||||||||||| | |||| || |
|
|
| T |
19523730 |
attgctctgagccgcaaaaatggaatggtggagtttgggctgattgtgtcggctttgtttaagtacaagaacaggtgggctcagtcccaatggacatctt |
19523829 |
T |
|
| Q |
406 |
tgaaggttgtttgcaacccactcaagtttgcagtttctccaaatgacaacaacacaacaaaccctggga |
474 |
Q |
| |
|
| |||| |||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||| |
|
|
| T |
19523830 |
taaaggctgtttgcaacccactcaagtttgcagtttctccaaatgactataacacaacaacccctggga |
19523898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 45 - 462
Target Start/End: Original strand, 19501594 - 19502005
Alignment:
| Q |
45 |
gagggttcactcaactcactaactgtcaacggcacccaactcacagccgagtttaacatttcggtctccggatataacttaaaatcgtattcccgtgtgt |
144 |
Q |
| |
|
||||||||||||||||||||||| | | | ||||||||||||||||||||| |||||| | ||||| | |||| | | |||||||||||| | |
|
|
| T |
19501594 |
gagggttcactcaactcactaaccattagcaacacccaactcacagccgagttcaacattaccgtctctgtcgataatcccacacagtattcccgtgttt |
19501693 |
T |
|
| Q |
145 |
attacgatgatgtctctgcggagatcttttacagaggtgaaggtgtcgttctaaccaaatcatctcttccatctttcaccaccgatggaaagagtgagag |
244 |
Q |
| |
|
||||||| | ||||||||| ||||| ||||| |||||||| || | |||||||||||||||||||||| ||||||||||||| | | || |||| |
|
|
| T |
19501694 |
attacgacgctgtctctgctgagatattttatggaggtgaaagtcttgttctaaccaaatcatctcttctatctttcaccacccacgaaa------agag |
19501787 |
T |
|
| Q |
245 |
tgtgattcatttgacgctttccgtgaataagtctgatgatttcggtggcgctgcgaccggtattgctcggagccgcaaagatggaacggtagaatttggg |
344 |
Q |
| |
|
||||||||| ||||| | || ||||| ||| || |||||| || ||||| |||||| | ||||||| ||||||||||||||||| || || |||||| |
|
|
| T |
19501788 |
cgtgattcatatgacgttgtcggtgaacaagccttctgattttggcggcgcggcgaccagcattgctcagagccgcaaagatggaagagtggagtttggg |
19501887 |
T |
|
| Q |
345 |
ctaattgtgaagtctttgtttaagtacaaaaacaggtgggctcagtccgactggaggcctatgaaggttgtttgcaacccactcaagtttgcagtttctc |
444 |
Q |
| |
|
|| ||| || |||||| |||| || || ||||| | | || |||| |||| | || |||||||||||||||| |||||||| |||| |||||||| |
|
|
| T |
19501888 |
ctcattctgtcatctttgattaaatataagaacagtatgtcgcattccggctgggagtctctgaaggttgtttgcaatccactcaaatttggagtttctc |
19501987 |
T |
|
| Q |
445 |
caaatgacaacaacacaa |
462 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
19501988 |
caaatgacttcaacacaa |
19502005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 77 - 346
Target Start/End: Complemental strand, 19517719 - 19517456
Alignment:
| Q |
77 |
cacccaactcacagccgagtttaacatttcggtctccggatataacttaaaatcgtattcccgtgtgtattacgatgatgtctctgcggagatcttttac |
176 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||| | ||||| | | |||||||||||| || ||||| | |||||||| |||||||||||| |
|
|
| T |
19517719 |
cacccaactcacagccgagttcaacattacggtctctgccgataaccccacagagtattcccgtgtttactacgacgcagtctctgctgagatcttttac |
19517620 |
T |
|
| Q |
177 |
agaggtgaaggtgtcgttctaaccaaatcatctcttccatctttcaccaccgatggaaagagtgagagtgtgattcatttgacgctttccgtgaataagt |
276 |
Q |
| |
|
||||||||||| | |||||||||||||||||||| |||||||||||||| || |||| ||||||||||||| ||||| | || ||||| ||| |
|
|
| T |
19517619 |
cgaggtgaaggtcttgttctaaccaaatcatctctgtcatctttcaccacccat-aaaag-----gagtgtgattcatatgacgttgtcggtgaacaagc |
19517526 |
T |
|
| Q |
277 |
ctgatgatttcggtggcgctgcgaccggtattgctcggagccgcaaagatggaacggtagaatttgggct |
346 |
Q |
| |
|
|| |||||| |||||||| || || | ||||||| ||||||||||||||||||||| || |||||||| |
|
|
| T |
19517525 |
ctattgattttggtggcgccgcagccagcattgctcagagccgcaaagatggaacggtggagtttgggct |
19517456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 47 - 465
Target Start/End: Complemental strand, 19125539 - 19125121
Alignment:
| Q |
47 |
gggttcactcaactcactaactgtcaacggcacccaactcacagccgagtttaacatttcggtctccggatataacttaaaatcgtattcccgtgtgtat |
146 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||| ||||||| ||||| ||||||| |||| || |||||| ||| | ||||| |||| ||| |
|
|
| T |
19125539 |
gggtgcactcaactcactaactgttaacggcacccaaatcacagctgagttcgacatttcagtcttcgcctataaccacaaaacctattctcgtgcctat |
19125440 |
T |
|
| Q |
147 |
tacgatgatgtctctgcggagatcttttacagaggtgaaggtgtcgttctaaccaaatcatctcttccatctttcaccaccgatggaaagagtgagagtg |
246 |
Q |
| |
|
||| | | |||||||| || |||||||| ||||||||||| | ||| ||| || | |||| || ||||||||||||||| || | ||||||| || | |
|
|
| T |
19125439 |
tacaaggcagtctctgcagatctcttttacggaggtgaaggtctggttttaaacagaacatcactgccatctttcaccacccatagcaagagtgctagcg |
19125340 |
T |
|
| Q |
247 |
tgattcatttgacgctttccgtgaataagtctgatgatttcggtggcgctgcgaccggtattgctcggagccgcaaagatggaacggtagaatttgggct |
346 |
Q |
| |
|
|||| | |||| | || || || | ||||| ||||| || || | || | || |||||| ||| ||||||||||||| ||| || |||||||| |
|
|
| T |
19125339 |
tgatgaagatgacaccatcggttaacatatctgaggattttggcggtgtagccagcgacgttgctctgaggcgcaaagatggaagggtggagtttgggct |
19125240 |
T |
|
| Q |
347 |
aattgtgaagtctttgtttaagtacaaaaacaggtgggctcagtccgactggaggcctatgaaggttgtttgcaacccactcaagtttgcagtttctcca |
446 |
Q |
| |
|
|||||| |||||||||||||||| ||||| | |||| |||||||||| || ||||||||||||||||||||||||| ||||||||||||| | |
|
|
| T |
19125239 |
gattgtgtcaactttgtttaagtacaagaacagattttctcattccgactggacatctttgaaggttgtttgcaacccactcaaatttgcagtttctcga |
19125140 |
T |
|
| Q |
447 |
aatgacaacaacacaacaa |
465 |
Q |
| |
|
|||| | |||||||||||| |
|
|
| T |
19125139 |
aatgtctacaacacaacaa |
19125121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 138 - 367
Target Start/End: Original strand, 19495613 - 19495842
Alignment:
| Q |
138 |
cgtgtgtattacgatgatgtctctgcggagatcttttacagaggtgaaggtgtcgttctaaccaaatcatctcttccatctttcaccaccgatggaaaga |
237 |
Q |
| |
|
||||| |||||||| | |||||| |||| |||||||||||||||||||| | ||||||| |||| ||||||| ||||||||||||||| || |||||| |
|
|
| T |
19495613 |
cgtgtctattacgacgcagtctctatggaggtcttttacagaggtgaaggtctggttctaaacaaaacatctctgccatctttcaccaccaatagaaaga |
19495712 |
T |
|
| Q |
238 |
gtgagagtgtgattcatttgacgctttccgtgaataagtctgatgatttcggtggcgctgcgaccggtattgctcggagccgcaaagatggaacggtaga |
337 |
Q |
| |
|
| | || |||||||| |||| || | || |||| || ||| ||||| || || | || ||||| ||| |||| |||| ||||||||||| |||| | |
|
|
| T |
19495713 |
gcgccagcgtgattcagatgacactaccggttaataggtttgaagattttggcggtgtggccaccggcatttctcgaagccacaaagatggaaaggtaaa |
19495812 |
T |
|
| Q |
338 |
atttgggctaattgtgaagtctttgtttaa |
367 |
Q |
| |
|
||||||||| || ||||| |||||||||| |
|
|
| T |
19495813 |
gtttgggctagttttgaaggctttgtttaa |
19495842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 385 - 447
Target Start/End: Complemental strand, 19130522 - 19130460
Alignment:
| Q |
385 |
ctcagtccgactggaggcctatgaaggttgtttgcaacccactcaagtttgcagtttctccaa |
447 |
Q |
| |
|
|||| |||||||||| || ||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
19130522 |
ctcattccgactggacatctttgaaggttgtttgcaacccactcaaatttgcagtttctccaa |
19130460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 465
Target Start/End: Original strand, 19495907 - 19495940
Alignment:
| Q |
432 |
tttgcagtttctccaaatgacaacaacacaacaa |
465 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |
|
|
| T |
19495907 |
tttgcagtttctccaaatgactacaacacaacaa |
19495940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 447
Target Start/End: Complemental strand, 19517396 - 19517355
Alignment:
| Q |
406 |
tgaaggttgtttgcaacccactcaagtttgcagtttctccaa |
447 |
Q |
| |
|
|||||||||||||||| |||||||| |||| ||||||||||| |
|
|
| T |
19517396 |
tgaaggttgtttgcaatccactcaaatttggagtttctccaa |
19517355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 47 - 238
Target Start/End: Original strand, 46536552 - 46536743
Alignment:
| Q |
47 |
gggttcactcaactcactaactgtcaacggcacccaactcacagccgagtttaacatttcggtctccggatataacttaaaatcgtattcccgtgtgtat |
146 |
Q |
| |
|
|||||||||||||||||| || || |||||||||||| |||||||| |||| || ||||||||||| | | ||||| | || || ||| ||||| ||| |
|
|
| T |
46536552 |
gggttcactcaactcacttacagttaacggcacccaagtcacagccaagttcaatatttcggtctcggtaaataaccctacatggttttctcgtgtctat |
46536651 |
T |
|
| Q |
147 |
tacgatgatgtctctgcggagatcttttacagaggtgaaggtgtcgttctaaccaaatcatctcttccatctttcaccaccgatggaaagag |
238 |
Q |
| |
|
||| | | ||||||| ||| | |||||| ||||||||| | |||| |||| ||||||| || ||||||||||||||| || ||||||| |
|
|
| T |
46536652 |
tacaacgcggtctctgttgaggttttttaccgaggtgaagctctcgtcctaaagaaatcatgtcggccatctttcaccacccatagaaagag |
46536743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 406 - 474
Target Start/End: Original strand, 46536887 - 46536955
Alignment:
| Q |
406 |
tgaaggttgtttgcaacccactcaagtttgcagtttctccaaatgacaacaacacaacaaaccctggga |
474 |
Q |
| |
|
|||| |||||||||||||| |||| |||| |||||||| |||||||| ||||||| ||| | |||||| |
|
|
| T |
46536887 |
tgaaagttgtttgcaaccctctcaggtttacagtttcttcaaatgacttcaacacatcaacctctggga |
46536955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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