View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3056-2-Insertion-16 (Length: 435)
Name: NF3056-2-Insertion-16
Description: NF3056-2
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3056-2-Insertion-16 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 8 - 435
Target Start/End: Complemental strand, 42474002 - 42473575
Alignment:
| Q |
8 |
ttttgccccaggataacacatgcttatagctagaacactagaaccaacacgtccgaaaattaatataacacatccagttgatgttggagcacaagaaaag |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42474002 |
ttttgccccaggataacacatgcttatagctagaacactagaaccaacacgtccgaaaattaatataacacatccagttgatgttggagcacaagaaaag |
42473903 |
T |
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| Q |
108 |
gcagcatttcggtatgtccttttaaagcttggcagcgtgatcagatccctagtaaagggattaaagagagaaaaaatgcaatctctgtccaaactccgcc |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |
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| T |
42473902 |
gcagcatttcggtatgtccttttaaagcttggcagcgtgatcagatccctagtaaagggattaaagagagaaaaaatgcgatctctgtccaacctccgct |
42473803 |
T |
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| Q |
208 |
agtcatgccggtttagcaataaccaaccatcttttgcatagcaaacacgacatccatccaactctggcaactcaagggaatagtcttacgctgcataggg |
307 |
Q |
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| T |
42473802 |
agtcatgccggtttagcaataaccaaccatcttttgcatagcaaacacgacatccatccaactctggcaactcaagggaatagtcttacgctgcataggg |
42473703 |
T |
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| Q |
308 |
tcataaaaatcataacaattaccaatttttgggaaatacataagccaaggtgattggtcgagtacacgtacagaagtggcaactgaacaccatctcttgc |
407 |
Q |
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| T |
42473702 |
tcataaaaatcataaaaattaccaatttttgggaaatacataagccgaggtgattggtccactacacgtacagaagtggcaactgaacaccatctcttgc |
42473603 |
T |
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| Q |
408 |
aaacagctgaagcacgaatattatcccc |
435 |
Q |
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| T |
42473602 |
aaacagctgaagcacggatattatcccc |
42473575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 8 - 435
Target Start/End: Complemental strand, 42479540 - 42479112
Alignment:
| Q |
8 |
ttttgccccaggataacacatgcttatagctagaacactagaaccaacacgtccgaaaattaatataacacatccagttgatgttggagcacaagaaaag |
107 |
Q |
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|||| |||||||||||||| |||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||| |
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| T |
42479540 |
tttttccccaggataacacgtgcttatagctacaagactagaaccaacacgtctgaaaattaatataacacatccagttgatgttggagcacatgagaag |
42479441 |
T |
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| Q |
108 |
gcagcatttcggtatgtccttttaaagcttggcagcgtgatcagatccctagtaaagggattaaagagagaaaaaatgcaatctctgtccaaactccgcc |
207 |
Q |
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| T |
42479440 |
gcagcaatttgatatgtcctgtcaaattttggcagcgtgatcagatccctagtaaagggattaaagagagagaaaatgtgatttccgtccaacctccgcc |
42479341 |
T |
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| Q |
208 |
agtcatgccggtttagcaataaccaaccatcttttgcatagcaaacacgacatccatccaactctggcaactcaagggaata-gtcttacgctgcatagg |
306 |
Q |
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|||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||| |
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| T |
42479340 |
agtcctgccggtttagcaataaccaaccatcttttgtatagcaaacacgacatccatccaactctggcaactcaagggaataggtcttacgctgaacagg |
42479241 |
T |
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| Q |
307 |
gtcataaaaatcataacaattaccaatttttgggaaatacataagccaaggtgattggtcgagtacacgtacagaagtggcaactgaacaccatctcttg |
406 |
Q |
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| T |
42479240 |
gtcatagaaatcataacaattacccttttttgggaaatacataagccaaggtgattggtcgagtacacgtacagaagtggcaactgaacaccatctcttg |
42479141 |
T |
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| Q |
407 |
caaacagctgaagcacgaatattatcccc |
435 |
Q |
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| T |
42479140 |
caaacagctgaagcacgaatattatcccc |
42479112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 214 - 433
Target Start/End: Original strand, 26047145 - 26047365
Alignment:
| Q |
214 |
gccggtttagcaataaccaaccatcttttgcatagcaaacacgacatccatccaactctggcaactcaagggaata-gtcttacgctgcatagggtcata |
312 |
Q |
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|||||| ||||| ||||||||||||||||| || ||||| | | |||||| ||||||||| ||||||| |||||| ||||| ||||| | ||||||||| |
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| T |
26047145 |
gccggtatagcagtaaccaaccatcttttgtgtaacaaactctagatccattcaactctggaaactcaatggaataggtcttccgctgaacagggtcata |
26047244 |
T |
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| Q |
313 |
aaaatcataacaattaccaatttttgggaaatacataagccaaggtgattggtcgagtacacgtacagaagtggcaactgaacaccatctcttgcaaaca |
412 |
Q |
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| T |
26047245 |
gaattcataccactgaccaaatttcggaaaatacatcaaccatggtgattggttcaccatgcgtacagcattggcaacaaaattccaactcttgcaaaca |
26047344 |
T |
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| Q |
413 |
gctgaagcacgaatattatcc |
433 |
Q |
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| T |
26047345 |
gcagaagcacggacattatcc |
26047365 |
T |
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Back To:
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