View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3056-2-Insertion-17 (Length: 422)
Name: NF3056-2-Insertion-17
Description: NF3056-2
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3056-2-Insertion-17 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 362; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 8 - 422
Target Start/End: Complemental strand, 33433229 - 33432813
Alignment:
| Q |
8 |
ttaagtcaatccacctcttttaaagagagattcaagaattctattcttctcagtattcgccttggtgatattcccccctcctaccttgagacatttgagg |
107 |
Q |
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| T |
33433229 |
ttaagccaatccacctcttttaaagagagattcaagaattctattcttctcagtattcgccttggtgatattcccccctcctaccttgagacatttgagg |
33433130 |
T |
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| Q |
108 |
aagaggtaactaagtttggaatggaaacttacctcaaaaagtatggaatggaaacaactccctctgttgagatcatccaggaagccaacgttagttgtcc |
207 |
Q |
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| T |
33433129 |
aagaggtaactaagtttggaatggaaacttacctcaaaaagtatggaatggaaacaactccctctggtgatatcatccaggaagccaacgttagttgttc |
33433030 |
T |
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| Q |
208 |
tctaatccaggtaacatataatcgaccttaccttacctggttattactgtgtccccctttccttt--tctcataataataacagtttttgtatatttaat |
305 |
Q |
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| T |
33433029 |
tctaatccaggtaacatataatcgaccttaacttacctggttattactgtgtccccctttcctttcctttcctcataataacagtttttgtatatttaat |
33432930 |
T |
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| Q |
306 |
ttgaaggctaattcttcgtccgagattgatggttctaatcttactaactcaatcggagtttttgaagaaggggttggtttgcttatggaggatttgtggg |
405 |
Q |
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| T |
33432929 |
ttgaaggctaattcttcatccgagattgattgttctaatcttactaactcaatcagagtttttgaagaaggggttggtttgcttatggaggatttgtggg |
33432830 |
T |
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| Q |
406 |
tgcgtcatgtcttcatt |
422 |
Q |
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| T |
33432829 |
tgcgtcatgtcttcatt |
33432813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 282 - 422
Target Start/End: Original strand, 33966527 - 33966667
Alignment:
| Q |
282 |
aataacagtttttgtatatttaatttgaaggctaattcttcgtccgagattgatggttctaatcttactaactcaatcggagtttttgaagaaggggttg |
381 |
Q |
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| T |
33966527 |
aataacaatttttgtatttttattttgaaggctaattcatcgtttgagatggactattctaatcttcctatctcgatcagagtgtttaaaaaaggggttg |
33966626 |
T |
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| Q |
382 |
gtttgcttatggaggatttgtgggtgcgtcatgtcttcatt |
422 |
Q |
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| T |
33966627 |
attttcttatggagaatttgtgggtgcgccatgtcttcatt |
33966667 |
T |
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