View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3056-2-Insertion-2 (Length: 1119)

Name: NF3056-2-Insertion-2
Description: NF3056-2
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3056-2-Insertion-2
NF3056-2-Insertion-2
[»] chr1 (5 HSPs)
chr1 (8-941)||(34592971-34593924)
chr1 (75-166)||(34577932-34578023)
chr1 (988-1088)||(34592804-34592911)
chr1 (280-375)||(34577750-34577845)
chr1 (646-695)||(2583065-2583114)
[»] chr6 (9 HSPs)
chr6 (75-165)||(32590173-32590263)
chr6 (75-165)||(32600621-32600711)
chr6 (79-165)||(24883687-24883773)
chr6 (280-377)||(32589981-32590078)
chr6 (280-377)||(32600429-32600526)
chr6 (479-538)||(32589846-32589905)
chr6 (479-538)||(32600294-32600353)
chr6 (615-696)||(20589647-20589726)
chr6 (481-543)||(24884037-24884099)
[»] chr5 (2 HSPs)
chr5 (589-696)||(25538790-25538894)
chr5 (646-681)||(24122981-24123016)
[»] chr7 (2 HSPs)
chr7 (79-117)||(27526724-27526762)
chr7 (79-117)||(27532378-27532416)
[»] scaffold0437 (1 HSPs)
scaffold0437 (646-696)||(14315-14365)
[»] chr3 (2 HSPs)
chr3 (646-696)||(16038000-16038050)
chr3 (646-696)||(16053496-16053546)
[»] chr2 (1 HSPs)
chr2 (646-696)||(20477468-20477518)


Alignment Details
Target: chr1 (Bit Score: 745; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 745; E-Value: 0
Query Start/End: Original strand, 8 - 941
Target Start/End: Complemental strand, 34593924 - 34592971
Alignment:
Q  8 gaatggtaattaattaacaattgcaatttagagaatattgcactcagaaattaattgcttcttgaattattagatcctgacatgcttgaggttggaaatg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  34593924 gaatggtaattaattaacaattgcaatttagagaatattgcactcagaaattaattgcttcttgaattattagatcctgacatgcttgaggttgggaatg 34593825  T
Q  108 gaggcatgactacagaagaatatcgttcacatttcagcatatgggctttagctaaggtatgatg-----aaacaaaatttagatactta----------- 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||               
T  34593824 gaggcatgactacagaagaatatcgttcacatttcagcatatgggctttagctaaggtatgatgtgatgaaacaaaatttagatacttaccagcccttga 34593725  T
Q  192 ------gtattgtgatggcattgccattgtcatgacatcctttaagcaaatcgtttttgatttttcactaaattggtttcttttgtatatactgataggc 285  Q
          ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  34593724 cttctagtattgtgatggcattgccattgtcatgacatcctttaagcaaattgtttttgatttttcactaaattggtttcttttgtatataatgataggc 34593625  T
Q  286 tcctttattggttggttgtgatattcgtgcaatggatagtaccacatatgaactaataaccaactcggaagttattgcagtaaaccaaggtatagataaa 385  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  34593624 tcctttattggttggttgtgatattcgtgcaatggataataccacatatgaattaataactaactcggaagttattgcagtaaaccaaggtatagataaa 34593525  T
Q  386 acagaattcatgaattactagaaagacaaaagcattgctttcttctatatgtcaatacgatataacactcaaaaaatctaattttccttctgttattgca 485  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  34593524 acagaattcatgaattactagaaagacaaaagcattgctttcttctatatgtcaatacgatataacactcaaaaaatcaaattttccttctgttattgca 34593425  T
Q  486 gataaactaggagttcaaggaaagaaagtgaaaagtactaatgatttggaggtaattttcttgttttttgatcccatgatttcatacactatccnnnnnn 585  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||          
T  34593424 gacaaactaggagttcaaggaaagaaagtgaaaagtactaatgatttggaggtaactttcttgt-ttttgatcccttgatttcatacactatcctttttt 34593326  T
Q  586 nnnaataaaatttttgaggtaggcgttagaggatggaagttctccgaggtgccagcaaccagttgagatgtcggtgattcctcttgatgtctgtcctatc 685  Q
       |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  34593325 tttaataaaatttttgaggtaggcggtagaggatggaagttctccgaggtgccagcaaccagttgagatgtcggtgtttcctcttgatatctgtcctatc 34593226  T
Q  686 tcctggcttatnnnnnnnnccatacaccatccctaccatactatctcacgggttgatgcccgacaccaacacatttgattttatttaatcattcttgttt 785  Q
    |||||||||||         ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34593225 tcctggcttataaaaaaaa-catacactatccctaccatactatctcacgggttgatgcccgacaccaacacatttgattttatttaatcattcttgttt 34593127  T
Q  786 tcttaaaatatactagtgtgtacgtattattaatgccattattgtattcaatgctaatgtcattctttcataaatagaaaagtatgacactaatactaaa 885  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  34593126 tcttaaattatactagtgtgtacgtattattaatgccattattgtattcaatgcttatgtcattctttcataaatagaaaagtatgacactaatactaaa 34593027  T
Q  886 ctatttttaggtgcatacatctcttctattcacaaacaaataaagcaaagtcaaaa 941  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  34593026 ctatttttaggtgcatacatctcttctattcacaaacaaataaagcaaagacaaaa 34592971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 75 - 166
Target Start/End: Complemental strand, 34578023 - 34577932
Alignment:
Q  75 tattagatcctgacatgcttgaggttggaaatggaggcatgactacagaagaatatcgttcacatttcagcatatgggctttagctaaggta 166  Q
    ||||||||||||| |||||||| |||||||||||||||||||| ||||| ||||||||| | ||||||||||| ||||| ||||||||||||    
T  34578023 tattagatcctgatatgcttgaagttggaaatggaggcatgaccacagaggaatatcgtgcccatttcagcatttgggcattagctaaggta 34577932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 988 - 1088
Target Start/End: Complemental strand, 34592911 - 34592804
Alignment:
Q  988 tctcaagaaaattttcttaatatagatagatgtgtatgttgta-gtttgggca-gtcctct-agtgaaa--cagctagcagttattttatg--ataggag 1080  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||   |||||||||||||||||||  |||||||    
T  34592911 tctcaagaaaattttcttaatatagatagatgtgtatgttgtaggtttgggcaggtcctctaagtgaaaacaagctagcagttattttatggaataggag 34592812  T
Q  1081 ctcatcaa 1088  Q
    ||||||||    
T  34592811 ctcatcaa 34592804  T

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Target: chr1; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 280 - 375
Target Start/End: Complemental strand, 34577845 - 34577750
Alignment:
Q  280 ataggctcctttattggttggttgtgatattcgtgcaatggatagtaccacatatgaactaataaccaactcggaagttattgcagtaaaccaagg 375  Q
    ||||||||||||||| ||||| ||| ||||||  |||||||||| ||||||||||||| | |||| |||||| |||||||||||||||||||||||    
T  34577845 ataggctcctttattagttggatgtaatattcaagcaatggataataccacatatgaattgataagcaactcagaagttattgcagtaaaccaagg 34577750  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 646 - 695
Target Start/End: Complemental strand, 2583114 - 2583065
Alignment:
Q  646 agttgagatgtcggtgattcctcttgatgtctgtcctatctcctggctta 695  Q
    ||||| ||||||| |||| |||||||||||||||||| |||||| |||||    
T  2583114 agttgggatgtcgatgatgcctcttgatgtctgtcctctctccttgctta 2583065  T

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Target: chr6 (Bit Score: 63; Significance: 8e-27; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 75 - 165
Target Start/End: Complemental strand, 32590263 - 32590173
Alignment:
Q  75 tattagatcctgacatgcttgaggttggaaatggaggcatgactacagaagaatatcgttcacatttcagcatatgggctttagctaaggt 165  Q
    ||||||||||||| |||||||| |||||||||||||||||||| ||||| ||||||||||| ||||||||||| ||||| |||||||||||    
T  32590263 tattagatcctgatatgcttgaagttggaaatggaggcatgacaacagaggaatatcgttcccatttcagcatctgggcattagctaaggt 32590173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 75 - 165
Target Start/End: Complemental strand, 32600711 - 32600621
Alignment:
Q  75 tattagatcctgacatgcttgaggttggaaatggaggcatgactacagaagaatatcgttcacatttcagcatatgggctttagctaaggt 165  Q
    ||||||||||||| |||||||| |||||||||||||||||||| ||||| ||||||||||| ||||||||||| ||||| |||||||||||    
T  32600711 tattagatcctgatatgcttgaagttggaaatggaggcatgacaacagaggaatatcgttcccatttcagcatctgggcattagctaaggt 32600621  T

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Target: chr6; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 79 - 165
Target Start/End: Original strand, 24883687 - 24883773
Alignment:
Q  79 agatcctgacatgcttgaggttggaaatggaggcatgactacagaagaatatcgttcacatttcagcatatgggctttagctaaggt 165  Q
    |||||||||||||||||| |||||||||||||| ||||| ||||||||||||||| | ||||||||||||||||| |||| ||||||    
T  24883687 agatcctgacatgcttgaagttggaaatggaggtatgacaacagaagaatatcgtgcccatttcagcatatgggcattagttaaggt 24883773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 280 - 377
Target Start/End: Complemental strand, 32590078 - 32589981
Alignment:
Q  280 ataggctcctttattggttggttgtgatattcgtgcaatggatagtaccacatatgaactaataaccaactcggaagttattgcagtaaaccaaggta 377  Q
    |||||| |||||||| ||||||||| ||||||  |||||||||| || ||| |||||| | |||| |||||| |||||||||||||||||||||||||    
T  32590078 ataggcccctttattagttggttgtaatattcaagcaatggataatatcacgtatgaattgataagcaactctgaagttattgcagtaaaccaaggta 32589981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 280 - 377
Target Start/End: Complemental strand, 32600526 - 32600429
Alignment:
Q  280 ataggctcctttattggttggttgtgatattcgtgcaatggatagtaccacatatgaactaataaccaactcggaagttattgcagtaaaccaaggta 377  Q
    |||||| |||||||| ||||||||| ||||||  |||||||||| || ||| |||||| | |||| |||||| |||||||||||||||||||||||||    
T  32600526 ataggcccctttattagttggttgtaatattcaagcaatggataatatcacgtatgaattgataagcaactctgaagttattgcagtaaaccaaggta 32600429  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 479 - 538
Target Start/End: Complemental strand, 32589905 - 32589846
Alignment:
Q  479 tattgcagataaactaggagttcaaggaaagaaagtgaaaagtactaatgatttggaggt 538  Q
    ||||||||||||||| |||||||| ||||||||||| ||||| |  |||||||| |||||    
T  32589905 tattgcagataaacttggagttcagggaaagaaagtaaaaagcaacaatgatttagaggt 32589846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 479 - 538
Target Start/End: Complemental strand, 32600353 - 32600294
Alignment:
Q  479 tattgcagataaactaggagttcaaggaaagaaagtgaaaagtactaatgatttggaggt 538  Q
    ||||||||||||||| |||||||| ||||||||||| ||||| |  |||||||| |||||    
T  32600353 tattgcagataaacttggagttcagggaaagaaagtaaaaagcaacaatgatttagaggt 32600294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 615 - 696
Target Start/End: Original strand, 20589647 - 20589726
Alignment:
Q  615 aggatggaagttctccgaggtgccagcaaccagttgagatgtcggtgattcctcttgatgtctgtcctatctcctggcttat 696  Q
    |||||||| |||||||| ||||||| |  | |||||||||||||| | | |||||||||| ||||||| |||||||| ||||    
T  20589647 aggatggaggttctccggggtgccaac--ctagttgagatgtcggaggtccctcttgatgcctgtcctttctcctggtttat 20589726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 481 - 543
Target Start/End: Original strand, 24884037 - 24884099
Alignment:
Q  481 ttgcagataaactaggagttcaaggaaagaaagtgaaaagtactaatgatttggaggtaattt 543  Q
    ||||||| ||| ||||| ||||||| ||||| |||||||||| | ||||||||||||| ||||    
T  24884037 ttgcagacaaattaggaattcaagggaagaaggtgaaaagtaatgatgatttggaggtgattt 24884099  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 589 - 696
Target Start/End: Original strand, 25538790 - 25538894
Alignment:
Q  589 aataaaatttttgaggtaggcgttagaggatggaagttctccgaggtgccagcaaccagttgagatgtcggtgattcctcttgatgtctgtcctatctcc 688  Q
    ||||||||||||||| |||||| |||||||| ||  ||||||||| |||    | |||||||  ||||||||| ||||||||||||  ||||||||||||    
T  25538790 aataaaatttttgagttaggcggtagaggatagagattctccgagatgc---gatccagttggaatgtcggtgtttcctcttgatgcatgtcctatctcc 25538886  T
Q  689 tggcttat 696  Q
    || |||||    
T  25538887 tgacttat 25538894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 646 - 681
Target Start/End: Original strand, 24122981 - 24123016
Alignment:
Q  646 agttgagatgtcggtgattcctcttgatgtctgtcc 681  Q
    |||||||||||||||| |||||||||||||||||||    
T  24122981 agttgagatgtcggtgtttcctcttgatgtctgtcc 24123016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 117
Target Start/End: Original strand, 27526724 - 27526762
Alignment:
Q  79 agatcctgacatgcttgaggttggaaatggaggcatgac 117  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  27526724 agatcctgacatgcttgaggttggaaatggagggatgac 27526762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 117
Target Start/End: Original strand, 27532378 - 27532416
Alignment:
Q  79 agatcctgacatgcttgaggttggaaatggaggcatgac 117  Q
    ||||||||| ||||||||||||||||||||||| |||||    
T  27532378 agatcctgatatgcttgaggttggaaatggagggatgac 27532416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0437 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: scaffold0437
Description:

Target: scaffold0437; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 646 - 696
Target Start/End: Complemental strand, 14365 - 14315
Alignment:
Q  646 agttgagatgtcggtgattcctcttgatgtctgtcctatctcctggcttat 696  Q
    ||||| ||||||| |||| |||||||||||||||||| |||||| ||||||    
T  14365 agttgggatgtcgatgatgcctcttgatgtctgtcctctctccttgcttat 14315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 646 - 696
Target Start/End: Original strand, 16038000 - 16038050
Alignment:
Q  646 agttgagatgtcggtgattcctcttgatgtctgtcctatctcctggcttat 696  Q
    ||||||||||||| |||| |||||||||||||||| | |||||| ||||||    
T  16038000 agttgagatgtcgatgatgcctcttgatgtctgtcatctctccttgcttat 16038050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 646 - 696
Target Start/End: Original strand, 16053496 - 16053546
Alignment:
Q  646 agttgagatgtcggtgattcctcttgatgtctgtcctatctcctggcttat 696  Q
    ||||||||||||| |||| |||||||||||||||| | |||||| ||||||    
T  16053496 agttgagatgtcgatgatgcctcttgatgtctgtcatctctccttgcttat 16053546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 646 - 696
Target Start/End: Original strand, 20477468 - 20477518
Alignment:
Q  646 agttgagatgtcggtgattcctcttgatgtctgtcctatctcctggcttat 696  Q
    ||||| ||||||| |||| |||||||||||||||||| |||||| ||||||    
T  20477468 agttgggatgtcgatgatgcctcttgatgtctgtcctttctccttgcttat 20477518  T

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