View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3056-2-Insertion-22 (Length: 247)
Name: NF3056-2-Insertion-22
Description: NF3056-2
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3056-2-Insertion-22 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 8 - 247
Target Start/End: Complemental strand, 766748 - 766510
Alignment:
| Q |
8 |
atatcttcatatatacacctccacatattaagtatctttagcaagaccacaaatttgaggatgaaacactatattctcattcctcatgtgatcgatatcc |
107 |
Q |
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| T |
766748 |
atatcttcatatatacacctccacatattaagtatctttaccaagaccacaaatttgaggatgaaacactatattctcattcctcatgtgatcgatatcc |
766649 |
T |
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| Q |
108 |
attaactcattagacaagacataactccaatagccttgataccccgaattatccatatcggataccgatacttatatcggagactcacatatacataatt |
207 |
Q |
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| T |
766648 |
attaactcattagacaagacataactccaatagccttgataccccgaattatacatatcggataccgata--tttatcggagactcacatatacataatt |
766551 |
T |
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| Q |
208 |
atttaacattagacaagatttactttga-ttattttattta |
247 |
Q |
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| T |
766550 |
agataacactagacaagacttactttgagttattttattta |
766510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 8 - 118
Target Start/End: Complemental strand, 789682 - 789571
Alignment:
| Q |
8 |
atatcttcatatatacacctccacatattaagtatctttagcaagaccac-aaatttgaggatgaaacactatattctcattcctcatgtgatcgatatc |
106 |
Q |
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|||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
789682 |
atatcttcatatatacacctccacatattatgcatctttagcaagaccactaaatttgaggatgaaacactatattctcattcctcatgtgatcgatatc |
789583 |
T |
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| Q |
107 |
cattaactcatt |
118 |
Q |
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| T |
789582 |
catgaactcatt |
789571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 785356 - 785281
Alignment:
| Q |
8 |
atatcttcatatatacacctccacatattaagtatctttagcaagaccacaaatttgaggatgaaacactatattc |
83 |
Q |
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| T |
785356 |
atatctttatatatacacctccacaaattatgcatctttagcaagaccacaaatttgaggatgaaacactatattc |
785281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 126 - 204
Target Start/End: Complemental strand, 8456261 - 8456185
Alignment:
| Q |
126 |
acataactccaatagccttgataccccgaattatccatatcggataccgatacttatatcggagactcacatatacata |
204 |
Q |
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| T |
8456261 |
acatacctccaatagccttgataccccgaattatacatatcggataccaatact--tatcagagattcacatatacata |
8456185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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