View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3056-2-Insertion-5 (Length: 1055)
Name: NF3056-2-Insertion-5
Description: NF3056-2
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3056-2-Insertion-5 |
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Alignment Details
Target: chr2 (Bit Score: 521; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 8 - 587
Target Start/End: Original strand, 34095299 - 34095881
Alignment:
| Q |
8 |
gaaaaaacactttgatcttcctcatcaacaacaacaggttttgaagtatggtgcattttcaccaactgggccatttcagtttcctcaacaacaaatgatg |
107 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34095299 |
gaaaaaacactttgatcttcctcatcaac---aacaggttttgaagtatggtgcattttcaccaactgggccatttcagtttcctcaacaacaaatgatg |
34095395 |
T |
|
| Q |
108 |
atgaatgaaaacaccaccaacaacaataataacactgttttggttggttctggttatgttccttttgttggttctaacgttggtgctggatggattgtgc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34095396 |
atgaatgaaaacaccaccaacaacaataataacactgttttggttggttctggttatgttccttttgttggttctaacgttggtgctggatggattgtgc |
34095495 |
T |
|
| Q |
208 |
ctaacaatcacaatcagaatcagaataacattaacaacagggttgttgttggtggcggtaactatggatctggttcactactttgtagtagtagaaaccc |
307 |
Q |
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|||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34095496 |
ctaacaatcagaatcagaatcagaataacattaaaaacagggttgttgttggtggtggtaactatggatctggttcactactttgtagtagtagaaaccc |
34095595 |
T |
|
| Q |
308 |
ttttgagccttctaaagagctctcttcaatgccaaatcttcttcactctcaaccttttgatctttgcctcaaggtataatatatttaatttaatcaatgt |
407 |
Q |
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| T |
34095596 |
ttttgagccttctaaagagctctcttcaatgccaaatcttcatcactctcaaccttttgatctttgcctcaaggtataatatatttaatttaatcaatgt |
34095695 |
T |
|
| Q |
408 |
catttactttaatcctttttgttttaaacgtgtttaagtttatttcatgacattgattcatgattagatcatggagattattaatttaacatcttt---- |
503 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
34095696 |
catttactttaatcctttttgttttaaacgtgtttaagtttatttcatgacattgattcatgattagatcatggagattattaatttaacattttttttt |
34095795 |
T |
|
| Q |
504 |
--ttgatgtacatcaaattttatgataaagttagctccttaatcttgtaattaaaaatgttattcatgttctcttacgtttagtta |
587 |
Q |
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|| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34095796 |
tgtttatgtacatcaaattttatgatgaagttagctccttaatcttgtaattaaaaatgttattcatgttctcttacgtttagtta |
34095881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 158; E-Value: 2e-83
Query Start/End: Original strand, 798 - 1054
Target Start/End: Original strand, 34096096 - 34096358
Alignment:
| Q |
798 |
gaagttaatttaatgaataatttgactttttgaatttatttaattcnnnnnnnnctttcagaaaacacgtttgaatgaggaggagagtaatgtaatgaga |
897 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34096096 |
gaagttaatttgatgaataatttgactttttgaatttatttaat---attttttatttcagaaaacacgtttgaatgaggaggagagtaatgtaatgaga |
34096192 |
T |
|
| Q |
898 |
ggagctggaacaaatacaaggaatttggaggcatggtctaatcatcattatgttcatgattttcttggaggatatatg-ctcaa-ctcaa-cttctgct- |
993 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||| |
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| T |
34096193 |
ggagctggaataaatacaaggaatttggaggcatggtctaatcatcattatgttcatgattttcttggaggatatatgcctcaacctcaaccttctgctt |
34096292 |
T |
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| Q |
994 |
---caactcatcacaatcttgatgagg-ataa-tcatacatatctagtaattttatttatttttgg |
1054 |
Q |
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| T |
34096293 |
atccaactcatcacaatcttgatgaggtataattcatacatatctagttattttatttatttttgg |
34096358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 47 - 111
Target Start/End: Complemental strand, 12294624 - 12294560
Alignment:
| Q |
47 |
tttgaagtatggtgcattttcaccaactgggccatttcagtttcctcaacaacaaatgatgatga |
111 |
Q |
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| T |
12294624 |
tttgaggtatggtgcattatcatcaaatgtgtcatttcagtttcctcaacaacaagtgatgatga |
12294560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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