View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3056-2-Insertion-6 (Length: 1038)
Name: NF3056-2-Insertion-6
Description: NF3056-2
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3056-2-Insertion-6 |
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Alignment Details
Target: chr8 (Bit Score: 844; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 844; E-Value: 0
Query Start/End: Original strand, 7 - 1013
Target Start/End: Complemental strand, 2525489 - 2524496
Alignment:
| Q |
7 |
agtaattactcacaggaaatgtcttgattcttgctccatttgtagtatcaatgaagctgcagttccgtacataaacttcttcaactatttcatgagaatt |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2525489 |
agtaattactcacaggaaatgtcttgattcttgctccatttgtagtatcaatgaagctgcagttccgtacataaacttcttcaactatttcatgagaatt |
2525390 |
T |
|
| Q |
107 |
atgtttaccaaggctgccgatgctgattaattcacacatttttcatgagtttctcaaatataatttctcaaatataattaaatcgtaataatatcatagt |
206 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||| |
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| T |
2525389 |
atgtttaccaaggctgccaatgctgattaattcacacatttttcatgagtttctaaaatataatt--------------aaatcataataatatcatagt |
2525304 |
T |
|
| Q |
207 |
gcttatctaaaaataagataaatatcatatcagtataacataagataaataaatttcatatctttgcttttcttatttgcatatgagctataaaatggaa |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2525303 |
gcttatctaaaaataagataaatatcatatcagtataacataagataaataaatttcatatccttgcttttcttatttgcatatgagctataaaatggaa |
2525204 |
T |
|
| Q |
307 |
tagaataaactataattcaattattatattgcataaccttattccatggccgggtccacaaaaaacacgggtaacattgatgtaagaagaaccaccattg |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2525203 |
tagaataaactataattcaattattatattgcataaccttattccatggccgggtccacaaaaaacacgggtaacattgatgtaagaagaaccaccattg |
2525104 |
T |
|
| Q |
407 |
agggcaatacaatcatcacctatttataagaaataaaattcattttaaaattggacatgtatgttgatcatggctataaaatgcatttttgatttgatat |
506 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2525103 |
agggcaatacaatcatcacctatttataagaaataaaattcattttaaaattggacatgtatgttgatcatggctataaaatgcatttttgatttgatat |
2525004 |
T |
|
| Q |
507 |
ttgtactaccttcttttataaacaaagatatgttatagagattatgatggatacttgaacccaatacaaatatttgaatcaaagatgtctttc-atgcac |
605 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
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|
| T |
2525003 |
ttgtactgccttcttttataaacaaagatatgttatagagattatgatggatacttgaacccaataaaaatatttgaatcaaagatgtctttcaatgcac |
2524904 |
T |
|
| Q |
606 |
attacatgcatgtttagaacaccaatcaacaaaactataacataacttccttgccctatgagattcaaaccaactctccagtataatgatttaacaaccc |
705 |
Q |
| |
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|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2524903 |
atta----catgtttagaacaccgatcaacaaaactataacataacttccttgccctatgagattcaaaccaactctccagtataatgatttaacaaccc |
2524808 |
T |
|
| Q |
706 |
aaacgataagaaacctcacccttgaaattaattttatattttgaaattcaaagaccccatcttgctttttcttctccttcaagttgacaccatcttacaa |
805 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2524807 |
aaacgataagaaacctcacccttgaaattaattttatattttgaaattcaaagaccccatcttgctttttcttctccttcaagttgacaccatcttacaa |
2524708 |
T |
|
| Q |
806 |
aaaataagaggcacaaatttgagatttggcaatnnnnnnngtggtgtagactaatttcacactaacgacggaatttaaactcaaaacgttatggatgact |
905 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |
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| T |
2524707 |
aaaataagaggcacaaatttgagatttggcaataaaaaaagtggtgtagactaatttcacactaacaacggaagttaaactcaaaacgttatggatgact |
2524608 |
T |
|
| Q |
906 |
aaacatccttagtagcatagtaaccc-ttggttga-gatacatttttagatgcatctataaaatattaaattgatagtgtttatatata--gaaaaataa |
1001 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
2524607 |
caacatccttagtagcatagtaaccctttggttgacaatacatttttagatgcatctataaaatattaaattgatagtgtttatatataagaaaaaataa |
2524508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 12 - 148
Target Start/End: Complemental strand, 32925798 - 32925662
Alignment:
| Q |
12 |
ttactcacaggaaatgtcttgattcttgctccatttgtagtatcaatgaagctgcagttccgtacataaacttcttcaactatttcatgagaattatgtt |
111 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||| |||||| |||||||||||| | |||| |||||| || |
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|
| T |
32925798 |
ttactcacaggaaatgttttgattcttgctccatttgtagtattagtgaagctgcagtttggtacattaacttcttcaaccgtctcataagaatttcctt |
32925699 |
T |
|
| Q |
112 |
taccaaggctgccgatgctgattaattcacacatttt |
148 |
Q |
| |
|
|||||||||| || || ||| ||||| |||||||||| |
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| T |
32925698 |
taccaaggctcccaatactgtttaatacacacatttt |
32925662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 12 - 148
Target Start/End: Original strand, 11658182 - 11658318
Alignment:
| Q |
12 |
ttactcacaggaaatgtcttgattcttgctccatttgtagtatcaatgaagctgcagttccgtacataaacttcttcaactatttcatgagaattatgtt |
111 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| | | ||||||| || || |||||||||||||||||||| | | || ||| | || | |
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|
| T |
11658182 |
ttactcacaggaaatgtcttgattctagctccatttgtagtgttagtgaagctacaattatgtacataaacttcttcaactgtctgataagactcattta |
11658281 |
T |
|
| Q |
112 |
taccaaggctgccgatgctgattaattcacacatttt |
148 |
Q |
| |
|
|||||||||| || |||||| || |||||||| |||| |
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| T |
11658282 |
taccaaggctaccaatgctgcttcattcacacgtttt |
11658318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 389 - 464
Target Start/End: Complemental strand, 32924824 - 32924749
Alignment:
| Q |
389 |
taagaagaaccaccattgagggcaatacaatcatcacctatttataagaaataaaattcattttaaaattggacat |
464 |
Q |
| |
|
||||| || |||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||| |||| |
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|
| T |
32924824 |
taagaggagccaccattgatggcaatacaatcatcacctatttataagaaaaccaactcattttaaaattgcacat |
32924749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 340 - 433
Target Start/End: Complemental strand, 2555710 - 2555617
Alignment:
| Q |
340 |
taaccttattccatggccgggtccacaaaaaacacgggtaacattgatgtaagaagaaccaccattgagggcaatacaatcatcacctatttat |
433 |
Q |
| |
|
|||||||||||||||||| ||||| ||| ||| || |||||||| || || | || |||| ||| || |||||||||||||||||||||||| |
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|
| T |
2555710 |
taaccttattccatggcctggtccgcaagtaacccgagtaacattaataaaaaaggagccactattaagcgcaatacaatcatcacctatttat |
2555617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 341 - 439
Target Start/End: Complemental strand, 2550152 - 2550054
Alignment:
| Q |
341 |
aaccttattccatggccgggtccacaaaaaacacgggtaacattgatgtaagaagaaccaccattgagggcaatacaatcatcacctatttataagaaa |
439 |
Q |
| |
|
|||||||| |||||||| ||||||||| ||| || ||| ||||||| ||| || |||||||| | ||||||||||| ||||||||||| |||||| |
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|
| T |
2550152 |
aaccttatcccatggcctggtccacaagtaacccgagtagcattgataaaagtggagccaccatttactgcaatacaatcgtcacctatttaaaagaaa |
2550054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 339 - 427
Target Start/End: Complemental strand, 13558698 - 13558610
Alignment:
| Q |
339 |
ataaccttattccatggccgggtccacaaaaaacacgggtaacattgatgtaagaagaaccaccattgagggcaatacaatcatcacct |
427 |
Q |
| |
|
|||||||||||||||| || || ||||| |||||| ||| ||| ||||||||| || || ||||| | ||||||||||||||||||| |
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|
| T |
13558698 |
ataaccttattccatgccctggaccacatgcaacacgagtagcatagatgtaagaggatcccccattaacggcaatacaatcatcacct |
13558610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 51
Target Start/End: Complemental strand, 13559043 - 13559004
Alignment:
| Q |
12 |
ttactcacaggaaatgtcttgattcttgctccatttgtag |
51 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
13559043 |
ttactcaccggaaatgtctttattcttgctccatttgtag |
13559004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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