View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3056-2-Insertion-9 (Length: 793)
Name: NF3056-2-Insertion-9
Description: NF3056-2
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3056-2-Insertion-9 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 491; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 262 - 793
Target Start/End: Complemental strand, 36836223 - 36835692
Alignment:
| Q |
262 |
tcaagaatgtagtcatcaacaaccattgacccttccaagctccaacaagcaaagaattagcagaagaaaaatctccagaagttgtgttagtgctaataat |
361 |
Q |
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| T |
36836223 |
tcaagaatgtagtcatcaacaaccattgacccttccaagctccaacaagcaaagaattagcagaagaaaaatctccagaagttgtgttagtgctaataat |
36836124 |
T |
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| Q |
362 |
aagaaccatccaatcatcttcagaaccaacccctgctataatatactttgaattatttaaatactttgtaaagtgactatttttagtataattagaaaac |
461 |
Q |
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| T |
36836123 |
aagaaccatccaatcatcttcagaaccaacccctgctataatatactttgaattatttaaatactttgtaaagtgactatttttagtataattagaaaac |
36836024 |
T |
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| Q |
462 |
aaatcatcttggtccaatttaggcacacacattggcataatgaccccatcttttgtggtattgatgttgatcttacacttctcaacactcttttcgaagt |
561 |
Q |
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| T |
36836023 |
aaatcatcttggtccaatttaggcacacacattggcataatgaccccatcttttgtggtattgatgttgatcttacacttctcaacactcttttcgaagt |
36835924 |
T |
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| Q |
562 |
taggaattttgggatttttaccgggtatatttgggtaatagttatgaaattcttcacagtgtttatgttcaagatcatttgcaattttgttagctaaaca |
661 |
Q |
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| T |
36835923 |
taggaattttgggatttttaccgggtatatttgggtagtagttatgaaattcttcgcagtgtttatgttcaagatcatttgcaattttgttggctaaaca |
36835824 |
T |
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| Q |
662 |
agatggcttgtcagttttatctaggataggaaggtttagaacttttctgtaagtgttgatgtcatgaagtagatccttctccttctctgcatggaaaata |
761 |
Q |
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| T |
36835823 |
agatggcttgtcagttttctctaggataggaaggtttagaacttttctgtatgtgttgatgtcatgaagtagatccttctccttctctgcatggaaaata |
36835724 |
T |
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| Q |
762 |
gacagnnnnnnncacacatattagactttata |
793 |
Q |
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| T |
36835723 |
gacagaaaaaaacacacatattagactttata |
36835692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 308 - 736
Target Start/End: Complemental strand, 36847637 - 36847209
Alignment:
| Q |
308 |
aagcaaagaattagcagaagaaaaatctccagaagttgtgttagtgctaataataagaaccatccaatcatcttcagaaccaacccctgctataatatac |
407 |
Q |
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| T |
36847637 |
aagcaaataagtagcagaagaaaaatctccagaagctgtgttggtaccaattataagaaccatcttatcaagatcatgaccaaccccagctaatgtatac |
36847538 |
T |
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| Q |
408 |
tttgaattatttaaatactttgtaaagtgactatttttagtataattagaaaacaaatcatcttggtcca--attt-aggcacacacattggcataatga |
504 |
Q |
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| T |
36847537 |
ttggaattattcaaatatggtgtaaaacgactatttttagtgtaattagaaaacaaatcattttcgtgcattatttcgggcacacaaactggcataacga |
36847438 |
T |
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| Q |
505 |
ccccatcttttgtggtattgatgttgatcttacacttctcaacactcttttcgaagttaggaattttgggatttttaccgggtatatttgggtaatagtt |
604 |
Q |
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| T |
36847437 |
ccccatctcttgtggtgttgatgttgatgtcacatttcttaacactcctttggaagtttggaatttcggggttgataccgggtaaa---ggatgaaaatc |
36847341 |
T |
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| Q |
605 |
atgaaattcttcacagtgtttatgttcaagatcatttgcaattttgttagctaaacaagatggcttgtcagttttatctaggataggaaggtttagaact |
704 |
Q |
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| T |
36847340 |
atgaaagtattcacaatgcttatcttctagatcatatgcaattctgttggctaaacaagatgccttgtagtttttctcaaggatagggaggttgagagct |
36847241 |
T |
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| Q |
705 |
tttctgtaagtgttgatgtcatgaagtagatc |
736 |
Q |
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| T |
36847240 |
tttctgtaagtgttgatatcatgaagtagatc |
36847209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 403 - 745
Target Start/End: Complemental strand, 36840652 - 36840313
Alignment:
| Q |
403 |
tatactttgaattatttaaatactttgtaaagtgactatttttagtataattagaaaacaaatcatcttggtccaatttaggcacacacattggcataat |
502 |
Q |
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||||||| |||||||| ||||||| |||||||||||||| | |||| |||||||||||||||||||||| ||||||| ||||||||| | | |||||| |
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| T |
36840652 |
tatacttggaattattcaaatactctgtaaagtgactatctctagtgtaattagaaaacaaatcatcttcgtccaatccaggcacacaaactcgcataag |
36840553 |
T |
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| Q |
503 |
gaccccatcttttgtggtattgatgttgatcttacacttctcaacactcttttcgaagttaggaattttgggatttttaccgggtatatttgggtaatag |
602 |
Q |
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| T |
36840552 |
gacccaatcttttgtggtgttgatggtgatgttacatttccaaacactcttttggaagtttggaatgctagggtttctgctgggtaaa---ggatgaaaa |
36840456 |
T |
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| Q |
603 |
ttatgaaattcttcacagtgtttatgttcaagatcatttgcaattttgttagctaaacaagatggcttgtcagtttt-atctaggataggaaggtttaga |
701 |
Q |
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| T |
36840455 |
tcatgaaagtcttcacaatgtttatcttttaaatcatatgcaaatttgatggctaaacaagatgcgtcgt-agttttcctcgaggatagggaggttctga |
36840357 |
T |
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| Q |
702 |
acttttctgtaagtgttgatgtcatgaagtagatccttctcctt |
745 |
Q |
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| T |
36840356 |
acttttctgtaaatgttgatgtcatgaagtaaatcattctcctt |
36840313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 7 - 82
Target Start/End: Complemental strand, 36836478 - 36836403
Alignment:
| Q |
7 |
agtacattgatatttgcgatagcatatcatgaatcaacacatttacaaaatgattgaaattgacaaatccttgctc |
82 |
Q |
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| T |
36836478 |
agtacattgatatttgcgatagcatatcatgaatcaacacatttacaaaatgattgaaattgacaaatccttgctc |
36836403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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