View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3056-3-Insertion-1 (Length: 1095)

Name: NF3056-3-Insertion-1
Description: NF3056-3
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3056-3-Insertion-1
NF3056-3-Insertion-1
[»] chr5 (9 HSPs)
chr5 (8-1055)||(43312575-43313636)
chr5 (38-163)||(39486411-39486536)
chr5 (59-162)||(39454592-39454695)
chr5 (41-165)||(39480323-39480447)
chr5 (53-163)||(39450952-39451062)
chr5 (41-165)||(39458389-39458513)
chr5 (38-162)||(39464626-39464750)
chr5 (53-163)||(39475458-39475568)
chr5 (59-163)||(39471988-39472092)
[»] chr1 (1 HSPs)
chr1 (845-958)||(17126581-17126692)
[»] chr7 (1 HSPs)
chr7 (845-958)||(19399155-19399268)
[»] chr8 (1 HSPs)
chr8 (850-958)||(21946304-21946412)
[»] chr3 (2 HSPs)
chr3 (845-907)||(24909316-24909379)
chr3 (912-958)||(24910986-24911031)


Alignment Details
Target: chr5 (Bit Score: 849; Significance: 0; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 849; E-Value: 0
Query Start/End: Original strand, 8 - 1055
Target Start/End: Original strand, 43312575 - 43313636
Alignment:
Q  8 gaaagggtttctgcaggactgtttggaagcttgatgaccaagacggttacacggagacggttatcacggttgacgagaagcttagcaaactcaagggtgg 107  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  43312575 gaaagggtttctgcaggactgtttggaaacttgatgaccaagacggttacacggagacggttatcacggttgatgagaagcttagcaaactcaagggtgg 43312674  T
Q  108 atactaaatgtcccacacctggagaagggataaacaccacttctagtttcttcatcctaaacaacaactnnnnnnnnctattttcgatcaacaagaagca 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||    
T  43312675 atactaaatgtcccacacctggagaagggataaacaccacttctagtttcttcatcctaaacaacaactaaaaaaaactattttcgatcaacaagaagca 43312774  T
Q  208 caaagtatatatcagtatagatagaaatccatacttgcgagtgatgtcatggctttgctggtgtgaaatgaatgtggtgaggaggagatttaaatgctgt 307  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43312775 caaagtatatatcagtatagatagaaatccatacttgcgaatgatgtcatggctttgctggtgtgaaatgaatgtggtgaggaggagatttaaatgctgt 43312874  T
Q  308 tgactatgtgcacaaatgttgttgtctttattaaagacaataatggattatagttgaggacagttaaattggatttttactgtatatttgtacattcgta 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43312875 tgactatgtgcacaaatgttgttgtctttattaaagacaataatggattatagttgaggacagttaaattggatttttactgtatatttgtacattcgta 43312974  T
Q  408 ttactaatactggtataaaacgtggatcctgaaattttgtgtggtgagcaatggttcggaaacctgaatcattatcttgtctagttggttcatataatag 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43312975 ttactaatactggtataaaacgtggatcctgaaattttgtgtggtgagcaatggttcggaaacctgaatcattatcttgtctagttggttcatataatag 43313074  T
Q  508 aacgtggtcagtgagggacaggactgagcaacacataattgatggtagaaacacagtctgtcnnnnnnnnnnnnngacggat------------cttgaa 595  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||            ||||||    
T  43313075 aacgtggtcagtgagggacaggactgagcaacacataattgatggtagaaacacagtctgtcttcttttttttttgacggatcacataagatcacttgaa 43313174  T
Q  596 gggtctatttcagagttgattagagggaatgaaaaacatggtagggaagatagtttgcaaaacacaaattgtgatgaagttttagaaaagttttcannnn 695  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||        
T  43313175 gggtctatttcagagttgattagagggaatgaaaaacatggtagagaagatagtttgcaaagcacaaattgtgatgaagttttagaaaagttttcatttt 43313274  T
Q  696 nnncttccctacaaaccttatcttttaaatgacacttatagtttccggtatcaaattaagatcttattacctttgtatagttttctattattacacagaa 795  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43313275 tttcttccctacaaaccttatcttttaaatgacacttatagtttccggtatcaaattaagatcttattacctttgtatagttttctattattacacagaa 43313374  T
Q  796 taatatcgttctaaaaactaaaaattgccacttctacaaaaaatgatatttattttgaattgtattaaacaaatcatcattttagaatgatg-atcatat 894  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  43313375 taatatcgttctaaaaactaaaaattgccacttctacaaaaaatgatatttattttgaattgtattaaacaaatcatcattttagaatgatgtatcatat 43313474  T
Q  895 aaattaaaattaatcagcaccaatgaattccaatcctcaaagcattgtacaaaatgaaagtattccctgatcttcaagcaaatagatc-acacaaataat 993  Q
    ||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  43313475 aaattaaaattaatcagcaccaatgaaattcaat-ctcaaagcattgtacaaaatgaaagtatt-cctgatcttcaagcaaatagatcaacacaaataat 43313572  T
Q  994 aataatcaggtccacacatgtatag-agcttgaaatagccatccataga--tgcaccgcatatca 1055  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||||  |||| |||||||||    
T  43313573 aataatcaggt-cacacatgtatagaagcttgaaatagccatccatagaattgcaacgcatatca 43313636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 38 - 163
Target Start/End: Complemental strand, 39486536 - 39486411
Alignment:
Q  38 ttgatgaccaagacggttacacggagacggttatcacggttgacgagaagcttagcaaactcaagggtggatactaaatgtcccacacctggagaaggga 137  Q
    ||||||||||||| |||||  ||||||||||||||||||||||  |||||||| ||||| ||||||||||| |||| ||| || ||||| || |||||||    
T  39486536 ttgatgaccaagatggttattcggagacggttatcacggttgattagaagctttgcaaattcaagggtggaaactagatgaccaacaccaggtgaaggga 39486437  T
Q  138 taaacaccacttctagtttcttcatc 163  Q
    ||| ||||||||||  ||||||||||    
T  39486436 taatcaccacttctgctttcttcatc 39486411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 59 - 162
Target Start/End: Complemental strand, 39454695 - 39454592
Alignment:
Q  59 cggagacggttatcacggttgacgagaagcttagcaaactcaagggtggatactaaatgtcccacacctggagaagggataaacaccacttctagtttct 158  Q
    ||||||||||||||||||||||  ||||| || || |||||||||||||| |||||||| || ||||| ||||||||||||||||||||||||  |||||    
T  39454695 cggagacggttatcacggttgattagaagtttcgcgaactcaagggtggaaactaaatggccaacaccaggagaagggataaacaccacttctgctttct 39454596  T
Q  159 tcat 162  Q
    ||||    
T  39454595 tcat 39454592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 41 - 165
Target Start/End: Complemental strand, 39480447 - 39480323
Alignment:
Q  41 atgaccaagacggttacacggagacggttatcacggttgacgagaagcttagcaaactcaagggtggatactaaatgtcccacacctggagaagggataa 140  Q
    |||||||| || ||||  ||||||||||||||||||||||  |||||||| || || ||||||||||| |||| ||| || ||||| || ||||||||||    
T  39480447 atgaccaaaacagttattcggagacggttatcacggttgattagaagcttcgcgaattcaagggtggaaactagatgaccaacaccaggtgaagggataa 39480348  T
Q  141 acaccacttctagtttcttcatcct 165  Q
     ||||||||||  ||||||||||||    
T  39480347 tcaccacttctgctttcttcatcct 39480323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 53 - 163
Target Start/End: Complemental strand, 39451062 - 39450952
Alignment:
Q  53 gttacacggagacggttatcacggttgacgagaagcttagcaaactcaagggtggatactaaatgtcccacacctggagaagggataaacaccacttcta 152  Q
    ||||| ||||||||||||||||| ||||  |||||||| || || ||||||||||| |||| ||| | |||||| ||| ||||||||||||||||||||     
T  39451062 gttactcggagacggttatcacgattgattagaagcttcgcgaattcaagggtggaaactagatggctcacaccaggaaaagggataaacaccacttctg 39450963  T
Q  153 gtttcttcatc 163  Q
     ||||||||||    
T  39450962 ctttcttcatc 39450952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 41 - 165
Target Start/End: Original strand, 39458389 - 39458513
Alignment:
Q  41 atgaccaagacggttacacggagacggttatcacggttgacgagaagcttagcaaactcaagggtggatactaaatgtcccacacctggagaagggataa 140  Q
    ||||||||||  ||||  ||||||||||||||||||||||  |||||||| ||||| || |||||||| |||| ||| || ||||| || |||| |||||    
T  39458389 atgaccaagatagttattcggagacggttatcacggttgattagaagctttgcaaattcgagggtggaaactagatgaccaacaccaggtgaagagataa 39458488  T
Q  141 acaccacttctagtttcttcatcct 165  Q
     ||||||||||  ||||||||||||    
T  39458489 tcaccacttctgctttcttcatcct 39458513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 38 - 162
Target Start/End: Original strand, 39464626 - 39464750
Alignment:
Q  38 ttgatgaccaagacggttacacggagacggttatcacggttgacgagaagcttagcaaactcaagggtggatactaaatgtcccacacctggagaaggga 137  Q
    |||||||| |||| |||||  ||||||||||||||||||||||  |||||||| |||||||||||||  || |||| ||| || ||| | ||| ||||||    
T  39464626 ttgatgactaagatggttattcggagacggttatcacggttgattagaagcttcgcaaactcaagggcagaaactagatgacctacagcgggaaaaggga 39464725  T
Q  138 taaacaccacttctagtttcttcat 162  Q
    ||||||| ||||||  |||||||||    
T  39464726 taaacactacttctgctttcttcat 39464750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 53 - 163
Target Start/End: Complemental strand, 39475568 - 39475458
Alignment:
Q  53 gttacacggagacggttatcacggttgacgagaagcttagcaaactcaagggtggatactaaatgtcccacacctggagaagggataaacaccacttcta 152  Q
    ||||| ||||||||||||||||| ||||  ||||||||  |||||||||| ||||| | || ||| | || ||| ||| ||||||||||||||||||||     
T  39475568 gttactcggagacggttatcacgattgattagaagcttcacaaactcaagtgtggaaattagatggctcagaccgggaaaagggataaacaccacttctg 39475469  T
Q  153 gtttcttcatc 163  Q
     ||||||||||    
T  39475468 ctttcttcatc 39475458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 59 - 163
Target Start/End: Complemental strand, 39472092 - 39471988
Alignment:
Q  59 cggagacggttatcacggttgacgagaagcttagcaaactcaagggtggatactaaatgtcccacacctggagaagggataaacaccacttctagtttct 158  Q
    ||||||||||||||||||||||  |||||||| |||||||| || |  || |||| ||| ||| || | ||| |||||| |||||||||||||  |||||    
T  39472092 cggagacggttatcacggttgattagaagcttcgcaaactcgagagcagaaactatatgaccctcagccggaaaagggacaaacaccacttctgctttct 39471993  T
Q  159 tcatc 163  Q
    |||||    
T  39471992 tcatc 39471988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 86; Significance: 2e-40; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 2e-40
Query Start/End: Original strand, 845 - 958
Target Start/End: Complemental strand, 17126692 - 17126581
Alignment:
Q  845 ttattttgaattgtattaaacaaatcatcattttagaatgatgatcatataaattaaaattaatcagcaccaatgaattccaatcctcaaagcattgtac 944  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| | |||| |||||||||||||||    
T  17126692 ttattttgaattgtattaaacaaatcgtcattttagaatgat-atcatataaattaaaattaatcagcaccaatgaaattcaat-ctcaaagcattgtac 17126595  T
Q  945 aaaatgaaagtatt 958  Q
    ||||||||||||||    
T  17126594 aaaatgaaagtatt 17126581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 2e-36; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 845 - 958
Target Start/End: Complemental strand, 19399268 - 19399155
Alignment:
Q  845 ttattttgaattgtattaaacaaatcatcattttagaatgat-gatcatataaattaaaattaatcagcaccaatgaattccaatcctcaaagcattgta 943  Q
    |||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||| |||||||||||| | |||| ||||||||||||||    
T  19399268 ttattttgaattgtattaaacaaatcgtcattttagaatgatatatcatataaattaaaattaattagcaccaatgaaattcaat-ctcaaagcattgta 19399170  T
Q  944 caaaatgaaagtatt 958  Q
    |||||||||||||||    
T  19399169 caaaatgaaagtatt 19399155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 1e-28; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 850 - 958
Target Start/End: Complemental strand, 21946412 - 21946304
Alignment:
Q  850 ttgaattgtattaaacaaatcatcattttagaatgatg-atcatataaattaaaattaatcagcaccaatgaattccaatcctcaaagcattgtacaaaa 948  Q
    ||||||||||||||||||||| |||||| ||||||||  ||||||||||||||||||||| |||||||||||| | |||| ||||||||||| |||||||    
T  21946412 ttgaattgtattaaacaaatcgtcatttgagaatgatatatcatataaattaaaattaattagcaccaatgaaattcaat-ctcaaagcattatacaaaa 21946314  T
Q  949 tgaaagtatt 958  Q
    ||||||||||    
T  21946313 tgaaagtatt 21946304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 7e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 845 - 907
Target Start/End: Original strand, 24909316 - 24909379
Alignment:
Q  845 ttattttgaattgtattaaacaaatcatcattttagaatgat-gatcatataaattaaaattaa 907  Q
    |||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||    
T  24909316 ttattttgaattgtattaaacaaatcgtcattttagaatgatatatcatataaattaaaattaa 24909379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 912 - 958
Target Start/End: Original strand, 24910986 - 24911031
Alignment:
Q  912 caccaatgaattccaatcctcaaagcattgtacaaaatgaaagtatt 958  Q
    |||||||||| | ||||| ||||||||||||||||||||||||||||    
T  24910986 caccaatgaaattcaatc-tcaaagcattgtacaaaatgaaagtatt 24911031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University