View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3056-3-Insertion-22 (Length: 116)
Name: NF3056-3-Insertion-22
Description: NF3056-3
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3056-3-Insertion-22 |
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Alignment Details
Target: chr1 (Bit Score: 108; Significance: 1e-54; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 1e-54
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 1840570 - 1840677
Alignment:
| Q |
8 |
tcaattactatgggtgcaagaacaatagctattgtgatgacaaggataaagattttggttaccgatgcatttgtaatcaaggttttgaaggaaatcctta |
107 |
Q |
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| T |
1840570 |
tcaattactatgggtgcaagaacaatagctattgtgatgacaaggataaagattttggttaccgatgcatttgtaatcaaggttttgaaggaaatcctta |
1840669 |
T |
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| Q |
108 |
tgaaccca |
115 |
Q |
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| T |
1840670 |
tgaaccca |
1840677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 7e-28
Query Start/End: Original strand, 14 - 108
Target Start/End: Original strand, 1866506 - 1866600
Alignment:
| Q |
14 |
actatgggtgcaagaacaatagctattgtgatgacaaggataaagattttggttaccgatgcatttgtaatcaaggttttgaaggaaatccttat |
108 |
Q |
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| T |
1866506 |
actatgggtgcaagaacaatagtcattgtgatgacaaggacacatattttggttaccgatgccattgcaatcaaggttttgaaggaaatccttat |
1866600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 7e-25
Query Start/End: Original strand, 14 - 108
Target Start/End: Complemental strand, 1832443 - 1832347
Alignment:
| Q |
14 |
actatgggtgcaagaacaatagctattgtgatgacaaggataaagattttggttac--cgatgcatttgtaatcaaggttttgaaggaaatccttat |
108 |
Q |
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| T |
1832443 |
actatgggtgcaagaagaatagctattgtgatgacaaggacacatattttggttaccgcgatgccattgcaatcaaggttttgaaggaaatccttat |
1832347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 101
Target Start/End: Complemental strand, 9157782 - 9157703
Alignment:
| Q |
22 |
tgcaagaacaatagctattgtgatgacaaggataaagattttggttaccgatgcatttgtaatcaaggttttgaaggaaa |
101 |
Q |
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| T |
9157782 |
tgcaagaaaaatagtgattgtgatgataaggacattgattttggttaccgatgtaaatgtaaggaaggttatgaaggaaa |
9157703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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