View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3056-3-Insertion-8 (Length: 736)
Name: NF3056-3-Insertion-8
Description: NF3056-3
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3056-3-Insertion-8 |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 205 - 473
Target Start/End: Original strand, 17147114 - 17147382
Alignment:
| Q |
205 |
tttaagttactgacaatgaatttataactggtttctgctttgtggactgaatggacnnnnnnnnnggggtgcagtgtgaggccaacttggtcctttaatg |
304 |
Q |
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| T |
17147114 |
tttaagttactgacaatgaatttataactggtttctgctttgtggactgaatggactttttttttggggtgcagtgtgaggccaacttggtcctttaatg |
17147213 |
T |
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| Q |
305 |
taaattattatatgtaggacaaaattattgaatactgcatggnnnnnnntaatatactgttcaaagtcccctacttattaaaacagtaaatctaaacaac |
404 |
Q |
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| T |
17147214 |
taaattattatatgtaggacaaaattattgaatactgcatggaaaaaaataatatactgttcaaagtcccctacttattaaaacagtaaatctaaacaac |
17147313 |
T |
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| Q |
405 |
tactagttattgatttcaaagaaattatgtctgtaagaaaaagtggaaatcatatcatatcatatgtaa |
473 |
Q |
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| T |
17147314 |
tactagttattgatttcaaagaaattatgtctgtaagaaaaagtggaaatcatatcatatcatatgtaa |
17147382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 8 - 125
Target Start/End: Original strand, 17146918 - 17147035
Alignment:
| Q |
8 |
gtttgctgctgttaagcctgccattccagctccaattatcacaatctttggttttttcaccaccattgttgctcttgctatatgctataattttgtttgt |
107 |
Q |
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| T |
17146918 |
gtttgctgctgttaagcctgccattccagctccaattatcacaatctttggttttttcaccaccattgttgcttttgctatatgctataattttgtttgt |
17147017 |
T |
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| Q |
108 |
gaatctatctcaatacac |
125 |
Q |
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| T |
17147018 |
gaatctatctcaatacac |
17147035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 692 - 736
Target Start/End: Original strand, 17147424 - 17147468
Alignment:
| Q |
692 |
atggaaaatgaggtatcaacatacaattgaaccatcatatttttg |
736 |
Q |
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| T |
17147424 |
atggaaaatgaggtatcaatatacaattgaaccatcatatttttg |
17147468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 499 - 541
Target Start/End: Original strand, 17147382 - 17147424
Alignment:
| Q |
499 |
acatataacatacatcatcaaatagtgtatgtttgatatctca |
541 |
Q |
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| T |
17147382 |
acatataacatacatcatcaaatagtctatgtttgatatctca |
17147424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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