View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3056-Insertion-10 (Length: 964)
Name: NF3056-Insertion-10
Description: NF3056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3056-Insertion-10 |
 | |
|
| [»] scaffold0283 (1 HSPs) |
| | |
|
| [»] scaffold0438 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 602; Significance: 0; HSPs: 12)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 602; E-Value: 0
Query Start/End: Original strand, 245 - 946
Target Start/End: Original strand, 6831285 - 6831986
Alignment:
| Q |
245 |
tcagcagtcctaagcatgatatttaacactcctccttgctttaggagctgcaaacaccaagctttgatctcatatcttcaaacttgatagttgataagga |
344 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6831285 |
tcagcagtcctaagcatgatatttaacactcctccttgctttaggagctgcaaacaccaagctttgatctcatatcttcaaacttgatagttgataaggg |
6831384 |
T |
|
| Q |
345 |
ctttgttaagatatcagctttttgctcttctgttttgcaataaacaagagtaataacaccatccttctgcacttccctcaagaaaagcaatttgatgttg |
444 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
6831385 |
ctttgttaagatatcagctttttgctcttctgttttgcaataaacaagagtaataacaccatccttctgcacttccctcaagaaaaacaatttgatgttg |
6831484 |
T |
|
| Q |
445 |
aaatgcttggttttttcgtgaaaaactggattatgagaaatagctattgcagcttgattatcaacaaagatcttagtggcttctttgtggtcaagatgaa |
544 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6831485 |
aaatgcttggtttttccgtgaaaaattggattatgagaaatagctattgaagcttgattatcaacaaagatcttagtggcttctttgtggtcaagatgaa |
6831584 |
T |
|
| Q |
545 |
ggtcactcaatatctttctctgccacatagcttgattaacagcagccgttgcagcaataaactccgcttcagcagttgattgagccactgtttcttgttt |
644 |
Q |
| |
|
||| |||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6831585 |
ggtaactcaatatctttctcagccacatagcttgattaacagcagacgttgcaacaataaactccgcttcagcagttgattgagccactgtttcttgttt |
6831684 |
T |
|
| Q |
645 |
tttcgaactccaaaagaaaacactagaaccaagtgtgaaacaatagccataagtgtttttcatttcatcagcagaacctccccaatcgttgtcacattca |
744 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||| | |||| |||||| |
|
|
| T |
6831685 |
tttcgaactccaagagaaaacactagaaccaagtgtgaaacaatagccagaagtgcttttcatatcatcagcagaacctccccaattgctgtcgcattca |
6831784 |
T |
|
| Q |
745 |
aaatatcaggccgtgtggctatcagatacatcaaacaaccgatcagacttctaaaatatgcttgatcaatcttttcagttccatcttctttgcaaagttt |
844 |
Q |
| |
|
||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
|
|
| T |
6831785 |
aaatatcaggccgcgtggttgtcagatacatcaaacaaccgatcagacttctaaaatatgcttgatcaatcttttcagttccatcttctttgccaagctt |
6831884 |
T |
|
| Q |
845 |
ctcctttgaattcattggagtgctcatttatctacattcttcaagtttaaactttttcaaaatttcttttgcgtatttcttttgacaagtgaaaatttca |
944 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
6831885 |
ctcctttgaattcattggagtgctcatttctctgcattcttcaagtttaaactttttcaaaatttcttttgcgtatttcttttgacaaatggaaatttca |
6831984 |
T |
|
| Q |
945 |
tc |
946 |
Q |
| |
|
|| |
|
|
| T |
6831985 |
tc |
6831986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 170; E-Value: 1e-90
Query Start/End: Original strand, 287 - 647
Target Start/End: Original strand, 28599124 - 28599485
Alignment:
| Q |
287 |
aggagctgcaaacaccaagctttgatctcatatcttcaaacttgatagttgataaggactttgttaagatatcagctttttgctcttctgttttgcaata |
386 |
Q |
| |
|
|||||| ||||||||||||||||| |||| | |||| ||||||| |||||| ||||| |||||| || |||||| || |||| ||||||||||||||||| |
|
|
| T |
28599124 |
aggagcagcaaacaccaagctttggtctcgtgtctttaaacttggtagttggtaagggctttgtaaatatatcatctatttgttcttctgttttgcaata |
28599223 |
T |
|
| Q |
387 |
aacaagagtaataacaccatccttctgcacttccc-tcaagaaaagcaatttgatgttgaaatgcttggttttttcgtgaaaaactggattatgagaaat |
485 |
Q |
| |
|
|||||||||| || | ||||||||||||||||||| ||||| ||| || ||||||||||||||||||||||| | |||||||||||| ||| || ||||| |
|
|
| T |
28599224 |
aacaagagtagtagcgccatccttctgcacttcccctcaaggaaaacagtttgatgttgaaatgcttggtttctccgtgaaaaactgaattgtgggaaat |
28599323 |
T |
|
| Q |
486 |
agctattgcagcttgattatcaacaaagatcttagtggcttctttgtggtcaagatgaaggtcactcaatatctttctctgccacatagcttgattaaca |
585 |
Q |
| |
|
|||||||||| |||||||||||||||| ||| || || |||||| || ||||||||||| |||| |||||||||| || ||| |||||||||||| ||| |
|
|
| T |
28599324 |
agctattgcaacttgattatcaacaaaaatcctattgtgttctttctgctcaagatgaagatcacgcaatatctttgtcagccgcatagcttgatttaca |
28599423 |
T |
|
| Q |
586 |
gcagccgttgcagcaataaactccgcttcagcagttgattgagccactgtttcttgtttttt |
647 |
Q |
| |
|
||||| ||||||||| |||||| |||| ||||| |||||||||||| ||||||||||||| |
|
|
| T |
28599424 |
gcagcatttgcagcaaaaaactctgctttggcagtagattgagccactatttcttgtttttt |
28599485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 159; E-Value: 4e-84
Query Start/End: Original strand, 246 - 656
Target Start/End: Complemental strand, 26404880 - 26404470
Alignment:
| Q |
246 |
cagcagtcctaagcatgatatttaacactcctccttgctttaggagctgcaaacaccaagctttgatctcatatcttcaaacttgatagttgataaggac |
345 |
Q |
| |
|
||||||| |||| || ||| |||||||||||||||||||||| ||||| |||||||| || | ||||| |||||||||||| ||| || ||| | |
|
|
| T |
26404880 |
cagcagttctaaacacaatagttaacactcctccttgctttagatactgcagacaccaagtttagttctcaggtcttcaaacttgctagctggtaaaggt |
26404781 |
T |
|
| Q |
346 |
tttgttaagatatcagctttttgctcttctgttttgcaataaacaagagtaataacaccatccttctgcacttccctcaagaaaagcaatttgatgttga |
445 |
Q |
| |
|
|| || || || || ||| | |||||||| |||||||| |||||||| | | |||| ||||||||| || ||||||| |||| || |||||||||| |
|
|
| T |
26404780 |
ttagtaaaaatgtctgctatctgctcttcagttttgcagtaaacaagtgctacaacattatccttctgtacctccctcacaaaaaacagcttgatgttga |
26404681 |
T |
|
| Q |
446 |
aatgcttggttttttcgtgaaaaactggattatgagaaatagctattgcagcttgattatcaacaaagatcttagtggcttctttgtggtcaagatgaag |
545 |
Q |
| |
|
|||| || |||||| | |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||| |
|
|
| T |
26404680 |
aatgtttagtttttccatgaaaaaccggattatgggaaatagctattgcagcttgattatcaacaaagatcttagtgtcttctttctgctcaagatgaag |
26404581 |
T |
|
| Q |
546 |
gtcactcaatatctttctctgccacatagcttgattaacagcagccgttgcagcaataaactccgcttcagcagttgattgagccactgtttcttgtttt |
645 |
Q |
| |
|
|||||||||||||| ||| ||| | ||||||||| |||||||| || ||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26404580 |
atcactcaatatcttcctcaaccatagagcttgatttacagcagcagtagcagcaacaaattccgcttcagcagttgattgagccactgtttcttgtttt |
26404481 |
T |
|
| Q |
646 |
ttcgaactcca |
656 |
Q |
| |
|
|| |||||||| |
|
|
| T |
26404480 |
tttgaactcca |
26404470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 152; E-Value: 5e-80
Query Start/End: Original strand, 7 - 174
Target Start/End: Original strand, 6831048 - 6831215
Alignment:
| Q |
7 |
agtaaacatttgattttgttgttaattgaacatgaaaacagttggagaaaatgaacaagacaaaggagaaataattgctttcattcatataattggtctg |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
6831048 |
agtaaacatttgattttgttgttaattgaacatgaaaacagttgcagaaaatgaacaagacaaaggagaaataactgctttcattcatataattggtctg |
6831147 |
T |
|
| Q |
107 |
ataatacaaactgaacatactcacctcttttacatggtttaacaatactaaaacttccaataactacc |
174 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
6831148 |
ataatacaaactgaacatacacacctcttttacatagtttaacaatactaaaacttccaataactacc |
6831215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 22 - 174
Target Start/End: Original strand, 2798198 - 2798350
Alignment:
| Q |
22 |
ttgttgttaattgaacatgaaaacagttggagaaaatgaacaagacaaaggagaaataattgctttcattcatataattggtctgataatacaaactgaa |
121 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2798198 |
ttgttgttaattgaacaagaaaacagttgcagaaaatgaacaagacaaaggagaaataactgctttcattcatataattggtctgataattcaaactgaa |
2798297 |
T |
|
| Q |
122 |
catactcacctcttttacatggtttaacaatactaaaacttccaataactacc |
174 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2798298 |
catacacacctcttttacatagtttaacaatactaaaacttccaataactacc |
2798350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 22 - 174
Target Start/End: Original strand, 6839388 - 6839540
Alignment:
| Q |
22 |
ttgttgttaattgaacatgaaaacagttggagaaaatgaacaagacaaaggagaaataattgctttcattcatataattggtctgataatacaaactgaa |
121 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||| ||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
6839388 |
ttgttgttaattgaacaagaaaacagttgcagagaatgaacaagaaaaaggagaaataactgctttcattcatataattggtctaataattcaaactgaa |
6839487 |
T |
|
| Q |
122 |
catactcacctcttttacatggtttaacaatactaaaacttccaataactacc |
174 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
6839488 |
catacacacctcttttacatagtttaacaatactaaaacttccaataactacc |
6839540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 25 - 174
Target Start/End: Complemental strand, 11634475 - 11634325
Alignment:
| Q |
25 |
ttgttaattgaacatgaaaacagttggagaaaatgaacaagacaaaggagaaataattgctttcattcatataattggtctgataatacaaactgaacat |
124 |
Q |
| |
|
|||||||||||||| ||||| ||||| || | |||||||||||| ||||||||||| |||||||||||| |||||||||||||| ||||||||| ||||| |
|
|
| T |
11634475 |
ttgttaattgaacaagaaaatagttgcaggatatgaacaagacagaggagaaataactgctttcattcaaataattggtctgatgatacaaactaaacat |
11634376 |
T |
|
| Q |
125 |
actc-acctcttttacatggtttaacaatactaaaacttccaataactacc |
174 |
Q |
| |
|
|| | ||| ||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
11634375 |
acacaaccacttttacatagtttaacaatactaaaacttccaataactacc |
11634325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 23 - 152
Target Start/End: Original strand, 14478132 - 14478263
Alignment:
| Q |
23 |
tgttgttaattgaacatgaaaacagttggagaaaatgaacaagacaaaggagaaataattgctttcattcatataattggtctgat---aatacaaactg |
119 |
Q |
| |
|
||||||||| | |||| ||||||||||| || |||||||||||||||||||||||||| ||||||||||||| ||||| ||||||| || |||||||| |
|
|
| T |
14478132 |
tgttgttaactaaacaagaaaacagttgcaggaaatgaacaagacaaaggagaaataactgctttcattcatgtaatttgtctgatgaaaaaacaaactg |
14478231 |
T |
|
| Q |
120 |
aacatactcacctcttttacatggtttaacaat |
152 |
Q |
| |
|
||||||| ||||||||||||| |||||||||| |
|
|
| T |
14478232 |
aacatac-aacctcttttacatagtttaacaat |
14478263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 22 - 174
Target Start/End: Original strand, 8978170 - 8978323
Alignment:
| Q |
22 |
ttgttgttaattgaacatgaaaacagttggagaaaatgaacaagacaaaggagaaataattgctttcattcatataattggtctgataatacaaactgaa |
121 |
Q |
| |
|
||||||||||||||||| ||||| ||||| | ||| |||||| | | ||||||||||| |||||||| |||| ||||||||||||| || |||||||| |
|
|
| T |
8978170 |
ttgttgttaattgaacaggaaaatagttgctggaaaagaacaaaatagaggagaaataactgctttcaatcatgtaattggtctgattattaaaactgaa |
8978269 |
T |
|
| Q |
122 |
catactc-acctcttttacatggtttaacaatactaaaacttccaataactacc |
174 |
Q |
| |
|
|||| | || | |||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
8978270 |
cataaacaactttttttacatagtttcacaatactaaaacttccaataactacc |
8978323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 577 - 662
Target Start/End: Original strand, 20782905 - 20782990
Alignment:
| Q |
577 |
tgattaacagcagccgttgcagcaataaactccgcttcagcagttgattgagccactgtttcttgttttttcgaactccaaaagaa |
662 |
Q |
| |
|
||||||||||| || || || ||||||||||| |||||||| |||||||| || || ||||||||||||| ||||||||| |||| |
|
|
| T |
20782905 |
tgattaacagctgctgtggctgcaataaactctgcttcagctgttgattgtgcaacaatttcttgtttttttgaactccaagagaa |
20782990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 577 - 662
Target Start/End: Complemental strand, 29472967 - 29472882
Alignment:
| Q |
577 |
tgattaacagcagccgttgcagcaataaactccgcttcagcagttgattgagccactgtttcttgttttttcgaactccaaaagaa |
662 |
Q |
| |
|
||||||||||| || || || ||||||||||| |||||||| |||||||| || || ||||||||||||| ||||||||| |||| |
|
|
| T |
29472967 |
tgattaacagctgctgtggctgcaataaactctgcttcagctgttgattgtgcaacaatttcttgtttttttgaactccaagagaa |
29472882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 171
Target Start/End: Complemental strand, 29404914 - 29404769
Alignment:
| Q |
26 |
tgttaattgaacatgaaaacagttggagaaaatgaacaagacaaaggagaaataattgctttcattcatataattggtctgataatacaaactgaacata |
125 |
Q |
| |
|
|||||| |||||| ||||| ||||| | ||||||||| |||| ||||||||||| |||||| |||||| ||| |||||||| | | ||||||||| | |
|
|
| T |
29404914 |
tgttaactgaacaagaaaatagttgctggaaatgaacacgacagaggagaaataactgctttgattcatgtaaccggtctgat-acaaaaactgaactga |
29404816 |
T |
|
| Q |
126 |
c-tcacctcttttacatggtttaacaatactaaaacttccaataact |
171 |
Q |
| |
|
| | || | |||||||| |||| | | |||||||||||||||||||| |
|
|
| T |
29404815 |
cataacatattttacatagtttcatagtactaaaacttccaataact |
29404769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 457; Significance: 0; HSPs: 12)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 245 - 737
Target Start/End: Complemental strand, 32529168 - 32528676
Alignment:
| Q |
245 |
tcagcagtcctaagcatgatatttaacactcctccttgctttaggagctgcaaacaccaagctttgatctcatatcttcaaacttgatagttgataagga |
344 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32529168 |
tcagcagtcctaagcatgatatttaacactcctccttgctttaggagctgcaaacaccaagctttgatctcatatcttcaaacttgatagttgataaggg |
32529069 |
T |
|
| Q |
345 |
ctttgttaagatatcagctttttgctcttctgttttgcaataaacaagagtaataacaccatccttctgcacttccctcaagaaaagcaatttgatgttg |
444 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
32529068 |
ctttgttaagatatcagctttttgctcttctgttttgcaataaacaagagtaataacaccatccttctgcacttccctcaagaaaaacaatttgatgttg |
32528969 |
T |
|
| Q |
445 |
aaatgcttggttttttcgtgaaaaactggattatgagaaatagctattgcagcttgattatcaacaaagatcttagtggcttctttgtggtcaagatgaa |
544 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32528968 |
aaatgcttggtttttccgtgaaaaactggattatgagaaatagctattgcagcttgattatcaacaaagatcttagtggcttctttgtggtcaagatgaa |
32528869 |
T |
|
| Q |
545 |
ggtcactcaatatctttctctgccacatagcttgattaacagcagccgttgcagcaataaactccgcttcagcagttgattgagccactgtttcttgttt |
644 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32528868 |
ggtcactcaatatctttctcagccacatagcttgattaacagcagccgttgcagcaataaactccgcttcagcagttgattgagccactgtttcttgttt |
32528769 |
T |
|
| Q |
645 |
tttcgaactccaaaagaaaacactagaaccaagtgtgaaacaatagccataagtgtttttcatttcatcagcagaacctccccaatcgttgtc |
737 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
32528768 |
tttcgaactccaagagaaaacactagaaccaagtgtgaaacaatagccagaagtgcttttcatatcatcagcagaacctccccaatcgctgtc |
32528676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 245 - 732
Target Start/End: Complemental strand, 26345373 - 26344886
Alignment:
| Q |
245 |
tcagcagtcctaagcatgatatttaacactcctccttgctttaggagctgcaaacaccaagctttgatctcatatcttcaaacttgatagttgataagga |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26345373 |
tcagcagtcctaagcatgatatttaacactcctccttggtttaggagctgcaaacaccaagctttgatctcatatcttcaaacttgatagttgataaggg |
26345274 |
T |
|
| Q |
345 |
ctttgttaagatatcagctttttgctcttctgttttgcaataaacaagagtaataacaccatccttctgcacttccctcaagaaaagcaatttgatgttg |
444 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
26345273 |
ctttgttaagatatcagctttttgctcttctgttttgcaataaacaagagtaataacaccatccttctgcacttccctcaagaaaaacaatttgatgttg |
26345174 |
T |
|
| Q |
445 |
aaatgcttggttttttcgtgaaaaactggattatgagaaatagctattgcagcttgattatcaacaaagatcttagtggcttctttgtggtcaagatgaa |
544 |
Q |
| |
|
||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26345173 |
aaatgcttggtttttccttgaaaaactagattatgagaaatagctattgcagcttgattatcaacaaagatcttagtggcttctttgtggtcaagatgaa |
26345074 |
T |
|
| Q |
545 |
ggtcactcaatatctttctctgccacatagcttgattaacagcagccgttgcagcaataaactccgcttcagcagttgattgagccactgtttcttgttt |
644 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26345073 |
ggtcactcaatatctttctcagccacatagcttgattaacagcagccgttgcaacaataaactccgcttcagcagttgattgagccactgtttcttgttt |
26344974 |
T |
|
| Q |
645 |
tttcgaactccaaaagaaaacactagaaccaagtgtgaaacaatagccataagtgtttttcatttcatcagcagaacctccccaatcg |
732 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||| |||||| |
|
|
| T |
26344973 |
tttcgaactccaagagaaaacactagaaccaagtgtgaaacaatagccagaagtgcttttcatatcatcagcagaacctcctcaatcg |
26344886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 176; E-Value: 3e-94
Query Start/End: Original strand, 739 - 942
Target Start/End: Complemental strand, 32528529 - 32528326
Alignment:
| Q |
739 |
cattcaaaatatcaggccgtgtggctatcagatacatcaaacaaccgatcagacttctaaaatatgcttgatcaatcttttcagttccatcttctttgca |
838 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32528529 |
cattcaaaatatcaggccgcatggctgtcagatacatcaaacaaccgatcagacttctaaaatatgcttgatcaatcttttcagttccatcttctttgca |
32528430 |
T |
|
| Q |
839 |
aagtttctcctttgaattcattggagtgctcatttatctacattcttcaagtttaaactttttcaaaatttcttttgcgtatttcttttgacaagtgaaa |
938 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
32528429 |
aagtttctcctttgaattcattggagtgctcatttctctgcattcttcaagtttaaactttttcaaaatttcttttgcgtatttcatttgacaaatgaaa |
32528330 |
T |
|
| Q |
939 |
attt |
942 |
Q |
| |
|
|||| |
|
|
| T |
32528329 |
attt |
32528326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 172; E-Value: 6e-92
Query Start/End: Original strand, 739 - 946
Target Start/End: Complemental strand, 26344734 - 26344527
Alignment:
| Q |
739 |
cattcaaaatatcaggccgtgtggctatcagatacatcaaacaaccgatcagacttctaaaatatgcttgatcaatcttttcagttccatcttctttgca |
838 |
Q |
| |
|
|||||||||||| |||||| |||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
26344734 |
cattcaaaatattaggccgcgtgggtgtcagatacatcaaacaaccgatcagacttctaaaatatgtttgatcaatcttttcagttccatcttctttgca |
26344635 |
T |
|
| Q |
839 |
aagtttctcctttgaattcattggagtgctcatttatctacattcttcaagtttaaactttttcaaaatttcttttgcgtatttcttttgacaagtgaaa |
938 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
26344634 |
aagtttctcctttgaattcattggagtgctcatttctctgcatttttcaagtttaaactttttcaaaatttcttttgcgtatttcttttgacaaatgaaa |
26344535 |
T |
|
| Q |
939 |
atttcatc |
946 |
Q |
| |
|
|||||||| |
|
|
| T |
26344534 |
atttcatc |
26344527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 22 - 174
Target Start/End: Complemental strand, 32525191 - 32525039
Alignment:
| Q |
22 |
ttgttgttaattgaacatgaaaacagttggagaaaatgaacaagacaaaggagaaataattgctttcattcatataattggtctgataatacaaactgaa |
121 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||| ||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
32525191 |
ttgttgttaattgaacaagaaaacagttgcagataatgaacaagaaaaaggagaaataactgctttcattcatataattggtctaataattcaaactgaa |
32525092 |
T |
|
| Q |
122 |
catactcacctcttttacatggtttaacaatactaaaacttccaataactacc |
174 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
32525091 |
catacacacctcttttacatagtttaacaatactaaaacttccaataactacc |
32525039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 23 - 174
Target Start/End: Complemental strand, 44981031 - 44980880
Alignment:
| Q |
23 |
tgttgttaattgaacatgaaaacagttggagaaaatgaacaagacaaaggagaaataattgctttcattcatataattggtctgataatacaaactgaac |
122 |
Q |
| |
|
|||||||||||||||| ||||||||||| || |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44981031 |
tgttgttaattgaacaagaaaacagttgcaggaaatgaacaagacagaggagaaataactgctttcattcatataattggtctgataatacaaactgaac |
44980932 |
T |
|
| Q |
123 |
atactcacctcttttacatggtttaacaatactaaaacttccaataactacc |
174 |
Q |
| |
|
| || |||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
44980931 |
acacacacctcttttacatagtttagcaatactaaaacttccaataactacc |
44980880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 25 - 174
Target Start/End: Complemental strand, 26345593 - 26345444
Alignment:
| Q |
25 |
ttgttaattgaacatgaaaacagttggagaaaatgaacaagacaaaggagaaataattgctttcattcatataattggtctgataatacaaactgaacat |
124 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
26345593 |
ttgttaattgaacaagaaaacagttgcagaaaatgaacaagaaaaagaagaaataactgctttcattcatataattggtctgataatacaaactaaacat |
26345494 |
T |
|
| Q |
125 |
actcacctcttttacatggtttaacaatactaaaacttccaataactacc |
174 |
Q |
| |
|
|| |||||||||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
26345493 |
acacacctcttttacatagtttaacaatactaaaactttcaataactacc |
26345444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 22 - 174
Target Start/End: Complemental strand, 32529391 - 32529238
Alignment:
| Q |
22 |
ttgttgttaattgaacatgaaaacagttggagaaaatgaacaagacaaaggagaaataattgctttcattcatataattggtctgataatacaaactgaa |
121 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
32529391 |
ttgttgttaattgaacaagaaaacagttgcagaaaatgaacaagaaaaaggagaaataactgctttcattcatataattggtctaataattcaaactgaa |
32529292 |
T |
|
| Q |
122 |
cat-actcacctcttttacatggtttaacaatactaaaacttccaataactacc |
174 |
Q |
| |
|
||| || |||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
32529291 |
cataacacacctcttttacatagtttaacaatactaaaacttccaataactacc |
32529238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 577 - 662
Target Start/End: Complemental strand, 19968723 - 19968638
Alignment:
| Q |
577 |
tgattaacagcagccgttgcagcaataaactccgcttcagcagttgattgagccactgtttcttgttttttcgaactccaaaagaa |
662 |
Q |
| |
|
||||||||||| || || || ||||||||||| |||||||| |||||||| || || ||||||||||||| ||||||||| |||| |
|
|
| T |
19968723 |
tgattaacagctgctgtggctgcaataaactctgcttcagctgttgattgtgcaacaatttcttgtttttttgaactccaagagaa |
19968638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 577 - 662
Target Start/End: Original strand, 21024086 - 21024171
Alignment:
| Q |
577 |
tgattaacagcagccgttgcagcaataaactccgcttcagcagttgattgagccactgtttcttgttttttcgaactccaaaagaa |
662 |
Q |
| |
|
||||||||||| || || || ||||||||||| |||||||| |||||||| || || ||||||||||||| ||||||||| |||| |
|
|
| T |
21024086 |
tgattaacagctgctgtggctgcaataaactctgcttcagctgttgattgtgcaacaatttcttgtttttttgaactccaagagaa |
21024171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 267 - 304
Target Start/End: Complemental strand, 18015093 - 18015056
Alignment:
| Q |
267 |
ttaacactcctccttgctttaggagctgcaaacaccaa |
304 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
18015093 |
ttaacactcctccttgctttaggatctgcaaactccaa |
18015056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 267 - 304
Target Start/End: Complemental strand, 43445457 - 43445420
Alignment:
| Q |
267 |
ttaacactcctccttgctttaggagctgcaaacaccaa |
304 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
43445457 |
ttaacactcctccttgctttaggatctgcaaactccaa |
43445420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 441; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 245 - 737
Target Start/End: Complemental strand, 28394955 - 28394463
Alignment:
| Q |
245 |
tcagcagtcctaagcatgatatttaacactcctccttgctttaggagctgcaaacaccaagctttgatctcatatcttcaaacttgatagttgataagga |
344 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28394955 |
tcagcagtcctaagcatgatatttaacactcctccttgctttaggagctgcaaacaccaagctttgatctcatatcttcaaacttgatagttgataaggg |
28394856 |
T |
|
| Q |
345 |
ctttgttaagatatcagctttttgctcttctgttttgcaataaacaagagtaataacaccatccttctgcacttccctcaagaaaagcaatttgatgttg |
444 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
28394855 |
ctttgttaagatatcagctttttgctcttctgttttgcaataaacaagagtaataacaccatccttctgcacttccctcaagaaaaacaatttgatgttg |
28394756 |
T |
|
| Q |
445 |
aaatgcttggttttttcgtgaaaaactggattatgagaaatagctattgcagcttgattatcaacaaagatcttagtggcttctttgtggtcaagatgaa |
544 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28394755 |
aaatgcttggtttttccgtgaaaaactggattatgagaaatagctattgcagcttgattatcaacaaagatcttagtggcttctttgtggtcaagatgaa |
28394656 |
T |
|
| Q |
545 |
ggtcactcaatatctttctctgccacatagcttgattaacagcagccgttgcagcaataaactccgcttcagcagttgattgagccactgtttcttgttt |
644 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
28394655 |
ggtcactcaatatctttctcagccacgtagcttgattaacagcagccgttgcagcaataaactccgcttcggcagttgattgagccactgtttcttgttt |
28394556 |
T |
|
| Q |
645 |
tttcgaactccaaaagaaaacactagaaccaagtgtgaaacaatagccataagtgtttttcatttcatcagcagaacctccccaatcgttgtc |
737 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||| ||||||||||||| ||||| ||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
28394555 |
tttcgaactccaagagaaaacactagaacctagtgagaaacaatagccagaagtgcttttcatatcatcagcagaacctccccaatcgctgtc |
28394463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 739 - 946
Target Start/End: Complemental strand, 28394316 - 28394109
Alignment:
| Q |
739 |
cattcaaaatatcaggccgtgtggctatcagatacatcaaacaaccgatcagacttctaaaatatgcttgatcaatcttttcagttccatcttctttgca |
838 |
Q |
| |
|
||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28394316 |
cattcaaaatatcaggccgcgttgctgtcagatacatcaaacaaccgatcagacttctaaaatatgcttgatcaatcttttcagttccatcttctttgca |
28394217 |
T |
|
| Q |
839 |
aagtttctcctttgaattcattggagtgctcatttatctacattcttcaagtttaaactttttcaaaatttcttttgcgtatttcttttgacaagtgaaa |
938 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
28394216 |
aagtttctcctttgaattcattggagtgctcatttatctgcattcttcaagtttaaactttttcaaaatttcttttgcgtatttcttttgacaaatgaaa |
28394117 |
T |
|
| Q |
939 |
atttcatc |
946 |
Q |
| |
|
|||||||| |
|
|
| T |
28394116 |
atttcatc |
28394109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 159; E-Value: 4e-84
Query Start/End: Original strand, 246 - 656
Target Start/End: Complemental strand, 1545247 - 1544837
Alignment:
| Q |
246 |
cagcagtcctaagcatgatatttaacactcctccttgctttaggagctgcaaacaccaagctttgatctcatatcttcaaacttgatagttgataaggac |
345 |
Q |
| |
|
||||||| |||| || ||| |||||||||||||||||||||| ||||| |||||||| || | ||||| |||||||||||| ||| || ||| | |
|
|
| T |
1545247 |
cagcagttctaaacacaatagttaacactcctccttgctttagatactgcagacaccaagtttagttctcaggtcttcaaacttgctagctggtaaaggt |
1545148 |
T |
|
| Q |
346 |
tttgttaagatatcagctttttgctcttctgttttgcaataaacaagagtaataacaccatccttctgcacttccctcaagaaaagcaatttgatgttga |
445 |
Q |
| |
|
|| || || || || ||| | |||||||| |||||||| |||||||| | | |||| ||||||||| || ||||||| |||| || |||||||||| |
|
|
| T |
1545147 |
ttagtaaaaatgtctgctatctgctcttcagttttgcagtaaacaagtgctacaacattatccttctgtacctccctcacaaaaaacagcttgatgttga |
1545048 |
T |
|
| Q |
446 |
aatgcttggttttttcgtgaaaaactggattatgagaaatagctattgcagcttgattatcaacaaagatcttagtggcttctttgtggtcaagatgaag |
545 |
Q |
| |
|
|||| || |||||| | |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||| |
|
|
| T |
1545047 |
aatgtttagtttttccatgaaaaaccggattatgggaaatagctattgcagcttgattatcaacaaagatcttagtgtcttctttctgctcaagatgaag |
1544948 |
T |
|
| Q |
546 |
gtcactcaatatctttctctgccacatagcttgattaacagcagccgttgcagcaataaactccgcttcagcagttgattgagccactgtttcttgtttt |
645 |
Q |
| |
|
|||||||||||||| ||| ||| | ||||||||| |||||||| || ||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1544947 |
atcactcaatatcttcctcaaccatagagcttgatttacagcagcagtagcagcaacaaattccgcttcagcagttgattgagccactgtttcttgtttt |
1544848 |
T |
|
| Q |
646 |
ttcgaactcca |
656 |
Q |
| |
|
|| |||||||| |
|
|
| T |
1544847 |
tttgaactcca |
1544837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 30 - 174
Target Start/End: Complemental strand, 28395169 - 28395025
Alignment:
| Q |
30 |
aattgaacatgaaaacagttggagaaaatgaacaagacaaaggagaaataattgctttcattcatataattggtctgataatacaaactgaacatactca |
129 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
28395169 |
aattgaacaagaaaacagttgcagaaaatgaacaagacaaaggagaaataactgctttcattcatataattggtctgataatacaaactgaacatacaca |
28395070 |
T |
|
| Q |
130 |
cctcttttacatggtttaacaatactaaaacttccaataactacc |
174 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
28395069 |
cctcttttacatagattaacaatactaaaacttccaataactacc |
28395025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 230; Significance: 1e-126; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 245 - 502
Target Start/End: Original strand, 35933346 - 35933603
Alignment:
| Q |
245 |
tcagcagtcctaagcatgatatttaacactcctccttgctttaggagctgcaaacaccaagctttgatctcatatcttcaaacttgatagttgataagga |
344 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35933346 |
tcagcagtcctaagcatgatatttaacactcctcctttctttaggagctgcaaacaccaagctttgatctcatatcttcaaacttgatagttgataaggg |
35933445 |
T |
|
| Q |
345 |
ctttgttaagatatcagctttttgctcttctgttttgcaataaacaagagtaataacaccatccttctgcacttccctcaagaaaagcaatttgatgttg |
444 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
35933446 |
ctttgttaagatatcagctttttgctcttctgttttgcaataaacaagagtaataacaccatccttctcaacttccctcaagaaaaacaatttgatgttg |
35933545 |
T |
|
| Q |
445 |
aaatgcttggttttttcgtgaaaaactggattatgagaaatagctattgcagcttgat |
502 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
35933546 |
aaatgcttggtttttccgtgaaaaactggattatgagaaatagctattgcagcctgat |
35933603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 23 - 174
Target Start/End: Original strand, 35933113 - 35933264
Alignment:
| Q |
23 |
tgttgttaattgaacatgaaaacagttggagaaaatgaacaagacaaaggagaaataattgctttcattcatataattggtctgataatacaaactgaac |
122 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35933113 |
tgttgttaattgaacaagaaaacagttgcagaaaatgaacaagaaaaaggagaaataactgctttcattcatataattggtctgataatacaaactgaac |
35933212 |
T |
|
| Q |
123 |
atactcacctcttttacatggtttaacaatactaaaacttccaataactacc |
174 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
35933213 |
atacacacctcttttacatagtttaacaatactaaaacttccaataactacc |
35933264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 405 - 656
Target Start/End: Original strand, 30506259 - 30506508
Alignment:
| Q |
405 |
atccttctgcacttccctcaagaaaagcaatttgatgttgaaatgcttggttttttcgtgaaaaactggattatgagaaatagctattgcagcttgatta |
504 |
Q |
| |
|
|||||||||||| ||||||| |||| || |||||||||||||| || |||||| | ||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
30506259 |
atccttctgcacctccctcacaaaaaacagcttgatgttgaaatgtttagtttttccatgaaaaactggattatgggaaatagctattgcagcttgatta |
30506358 |
T |
|
| Q |
505 |
tcaacaaagatcttagtggcttctttgtggtcaagatgaaggtcactcaatatctttctctgccacatagcttgattaacagcagccgttgcagcaataa |
604 |
Q |
| |
|
|||||||| || || || ||||||| || ||||||||||| |||||||| ||||| ||| ||| | ||||||||| ||||||| || | ||||| || |
|
|
| T |
30506359 |
tcaacaaatat--taatgtcttctttctgctcaagatgaagatcactcaaaatcttcctcaaccatagagcttgatttacagcagaagtagtagcaacaa |
30506456 |
T |
|
| Q |
605 |
actccgcttcagcagttgattgagccactgtttcttgttttttcgaactcca |
656 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30506457 |
attccgcttcagcagttgattgagccactgtttcttgtttttttgaactcca |
30506508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 98; E-Value: 9e-48
Query Start/End: Original strand, 22 - 174
Target Start/End: Original strand, 47661932 - 47662085
Alignment:
| Q |
22 |
ttgttgttaattgaacatgaaaacagttggagaaaatgaacaagacaaaggagaaataattgctttcattcatataattggtctgataatacaaactgaa |
121 |
Q |
| |
|
||||||||| ||||||| ||||||||||| || |||||||||||||| ||||||||||| || |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
47661932 |
ttgttgttacttgaacaagaaaacagttgcaggaaatgaacaagacagaggagaaataactgatttcattcatgaaattggtctgataatacaaactgaa |
47662031 |
T |
|
| Q |
122 |
catactc-acctcttttacatggtttaacaatactaaaacttccaataactacc |
174 |
Q |
| |
|
|| || | ||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
47662032 |
cacacacaacctcttttacatagtttaacaatactaaaacttccaataactacc |
47662085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 577 - 662
Target Start/End: Complemental strand, 29871404 - 29871319
Alignment:
| Q |
577 |
tgattaacagcagccgttgcagcaataaactccgcttcagcagttgattgagccactgtttcttgttttttcgaactccaaaagaa |
662 |
Q |
| |
|
||||||||||| || || || ||||||||||| |||||||| |||||||| || || ||||||||||||| ||||||||| |||| |
|
|
| T |
29871404 |
tgattaacagctgctgtggctgcaataaactctgcttcagctgttgattgtgcaacaatttcttgtttttttgaactccaagagaa |
29871319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 267 - 304
Target Start/End: Original strand, 35966010 - 35966047
Alignment:
| Q |
267 |
ttaacactcctccttgctttaggagctgcaaacaccaa |
304 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
35966010 |
ttaacactcctccttgctttaggatctgcaaactccaa |
35966047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 267 - 304
Target Start/End: Complemental strand, 43586769 - 43586732
Alignment:
| Q |
267 |
ttaacactcctccttgctttaggagctgcaaacaccaa |
304 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
43586769 |
ttaacactcctccttgctttaggatctgcaaactccaa |
43586732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 159; Significance: 4e-84; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 4e-84
Query Start/End: Original strand, 246 - 656
Target Start/End: Complemental strand, 17797369 - 17796959
Alignment:
| Q |
246 |
cagcagtcctaagcatgatatttaacactcctccttgctttaggagctgcaaacaccaagctttgatctcatatcttcaaacttgatagttgataaggac |
345 |
Q |
| |
|
||||||| |||| || ||| |||||||||||||||||||||| ||||| |||||||| || | ||||| |||||||||||| ||| || ||| | |
|
|
| T |
17797369 |
cagcagttctaaacacaatagttaacactcctccttgctttagatactgcagacaccaagtttagttctcaggtcttcaaacttgctagctggtaaaggt |
17797270 |
T |
|
| Q |
346 |
tttgttaagatatcagctttttgctcttctgttttgcaataaacaagagtaataacaccatccttctgcacttccctcaagaaaagcaatttgatgttga |
445 |
Q |
| |
|
|| || || || || ||| | |||||||| |||||||| |||||||| | | |||| ||||||||| || ||||||| |||| || |||||||||| |
|
|
| T |
17797269 |
ttagtaaaaatgtctgctatctgctcttcagttttgcagtaaacaagtgctacaacattatccttctgtacctccctcacaaaaaacagcttgatgttga |
17797170 |
T |
|
| Q |
446 |
aatgcttggttttttcgtgaaaaactggattatgagaaatagctattgcagcttgattatcaacaaagatcttagtggcttctttgtggtcaagatgaag |
545 |
Q |
| |
|
|||| || |||||| | |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||| |
|
|
| T |
17797169 |
aatgtttagtttttccatgaaaaaccggattatgggaaatagctattgcagcttgattatcaacaaagatcttagtgtcttctttctgctcaagatgaag |
17797070 |
T |
|
| Q |
546 |
gtcactcaatatctttctctgccacatagcttgattaacagcagccgttgcagcaataaactccgcttcagcagttgattgagccactgtttcttgtttt |
645 |
Q |
| |
|
|||||||||||||| ||| ||| | ||||||||| |||||||| || ||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17797069 |
atcactcaatatcttcctcaaccatagagcttgatttacagcagcagtagcagcaacaaattccgcttcagcagttgattgagccactgtttcttgtttt |
17796970 |
T |
|
| Q |
646 |
ttcgaactcca |
656 |
Q |
| |
|
|| |||||||| |
|
|
| T |
17796969 |
tttgaactcca |
17796959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 155; Significance: 9e-82; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 155; E-Value: 9e-82
Query Start/End: Original strand, 246 - 656
Target Start/End: Complemental strand, 7037951 - 7037541
Alignment:
| Q |
246 |
cagcagtcctaagcatgatatttaacactcctccttgctttaggagctgcaaacaccaagctttgatctcatatcttcaaacttgatagttgataaggac |
345 |
Q |
| |
|
||||||| |||| || ||| |||||||||||||||||||||| ||||| |||||||| || | ||||| |||||||||||| ||| || ||| | |
|
|
| T |
7037951 |
cagcagttctaaacacaatagttaacactcctccttgctttagatactgcagacaccaagtttagttctcaggtcttcaaacttgctagctggtaaaggt |
7037852 |
T |
|
| Q |
346 |
tttgttaagatatcagctttttgctcttctgttttgcaataaacaagagtaataacaccatccttctgcacttccctcaagaaaagcaatttgatgttga |
445 |
Q |
| |
|
|| || || || || ||| | |||||||| ||||||| |||||||| | | |||| ||||||||| || ||||||| |||| || |||||||||| |
|
|
| T |
7037851 |
ttagtaaaaatgtctgctatctgctcttcaattttgcagtaaacaagtgctacaacattatccttctgtacctccctcacaaaaaacagcttgatgttga |
7037752 |
T |
|
| Q |
446 |
aatgcttggttttttcgtgaaaaactggattatgagaaatagctattgcagcttgattatcaacaaagatcttagtggcttctttgtggtcaagatgaag |
545 |
Q |
| |
|
|||| || |||||| | |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||| |
|
|
| T |
7037751 |
aatgtttagtttttccatgaaaaaccggattatgggaaatagctattgcagcttgattatcaacaaagatcttagtgtcttctttatgctcaagatgaag |
7037652 |
T |
|
| Q |
546 |
gtcactcaatatctttctctgccacatagcttgattaacagcagccgttgcagcaataaactccgcttcagcagttgattgagccactgtttcttgtttt |
645 |
Q |
| |
|
|||||||||||||| ||| ||| | ||||||||| |||||||| || ||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7037651 |
atcactcaatatcttcctcaaccatagagcttgatttacagcagcagtagcagcaacaaattccgcttcagcagttgattgagccactgtttcttgtttt |
7037552 |
T |
|
| Q |
646 |
ttcgaactcca |
656 |
Q |
| |
|
|| |||||||| |
|
|
| T |
7037551 |
tttgaactcca |
7037541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 577 - 662
Target Start/End: Complemental strand, 26054583 - 26054498
Alignment:
| Q |
577 |
tgattaacagcagccgttgcagcaataaactccgcttcagcagttgattgagccactgtttcttgttttttcgaactccaaaagaa |
662 |
Q |
| |
|
||||||||||| || || || ||||||||||| |||||||| |||||||| || || ||||||||||||| ||||||||| |||| |
|
|
| T |
26054583 |
tgattaacagctgctgtggctgcaataaactctgcttcagctgttgattgtgcaacaatttcttgtttttttgaactccaagagaa |
26054498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 577 - 662
Target Start/End: Complemental strand, 26074636 - 26074551
Alignment:
| Q |
577 |
tgattaacagcagccgttgcagcaataaactccgcttcagcagttgattgagccactgtttcttgttttttcgaactccaaaagaa |
662 |
Q |
| |
|
||||||||||| || || || ||||||||||| |||||||| |||||||| || || ||||||||||||| ||||||||| |||| |
|
|
| T |
26074636 |
tgattaacagctgctgtggctgcaataaactctgcttcagctgttgattgtgcaacaatttcttgtttttttgaactccaagagaa |
26074551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 267 - 304
Target Start/End: Complemental strand, 26257907 - 26257870
Alignment:
| Q |
267 |
ttaacactcctccttgctttaggagctgcaaacaccaa |
304 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
26257907 |
ttaacactcctccttgctttaggatctgcaaactccaa |
26257870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 136; Significance: 2e-70; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 287 - 690
Target Start/End: Complemental strand, 43373649 - 43373247
Alignment:
| Q |
287 |
aggagctgcaaacaccaagctttgatctcatatcttcaaacttgatagttgataaggactttgttaagatatcagctttttgctcttctgttttgcaata |
386 |
Q |
| |
|
||||| ||||||||||||| ||| ||||||| |||||||||| ||| || |||||| || || || ||||||||| |||| |||| ||||||| |||| |
|
|
| T |
43373649 |
aggagttgcaaacaccaagttttaatctcatgccttcaaacttagtagatggtaaggatttagtaaaaatatcagctatttgttcttatgttttgtaata |
43373550 |
T |
|
| Q |
387 |
aacaagagtaataacaccatccttctgcacttccctcaagaaaagcaatttgatgttgaaatgcttggttttttcgtgaaaaactggattatgagaaata |
486 |
Q |
| |
|
||||||||| | | |||||||||| | ||||| |||||||| || |||||||||||||||||||| ||||||| ||||||||| |||||| |||||||| |
|
|
| T |
43373549 |
aacaagagttacatcaccatccttttacactttcctcaagacaaacaatttgatgttgaaatgctaggtttttccgtgaaaaattggattgcgagaaata |
43373450 |
T |
|
| Q |
487 |
gctattgcagcttgattatcaacaaagatcttagtggcttctttgtggtcaagatgaaggtcactcaatatctttctctgccacatagcttgattaacag |
586 |
Q |
| |
|
|| ||| | ||||||||||||||| ||||||||| |||||||||| ||||||||||| ||| |||||||||||| |||||||||||||| | |||| |
|
|
| T |
43373449 |
gcctctgcggtttgattatcaacaaatatcttagtgtcttctttgtgctcaagatgaagatcatctaatatctttctcagccacatagcttgacttacag |
43373350 |
T |
|
| Q |
587 |
cagccgttgcagcaataaactccgcttcagcagttgattgagccactgtttcttgttttttcgaactccaaaagaaaacactagaaccaagtgtgaaaca |
686 |
Q |
| |
|
|| | |||||| ||| |||||| |||| ||||| ||||||||||| | |||||||||| |||||||| || ||| | | |||||||||| ||||| |
|
|
| T |
43373349 |
caacagttgcaacaacaaactctacttcggcagtagattgagccaccatggcttgtttttt-taactccaagagtaaatgccataaccaagtgtaaaaca |
43373251 |
T |
|
| Q |
687 |
atag |
690 |
Q |
| |
|
|||| |
|
|
| T |
43373250 |
atag |
43373247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 21 - 174
Target Start/End: Original strand, 43166031 - 43166186
Alignment:
| Q |
21 |
tttgttgttaattgaacatgaaaacagttggagaaaatgaacaagacaaaggagaaataattgctttcattcatataattggtctgataata--caaact |
118 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || | ||||| |
|
|
| T |
43166031 |
tttgttgttaattgaacaagaaaacagttgcagaaaatgaacaagacaaaggagaaataactgctttcattcatataattggtctgaaaaaaacaaaact |
43166130 |
T |
|
| Q |
119 |
gaacatactcacctcttttacatggtttaacaatactaaaacttccaataactacc |
174 |
Q |
| |
|
|||||||| |||||||||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
43166131 |
gaacatacacacctcttttacatagtttgacaatactaaaacttccaataactacc |
43166186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 771 - 947
Target Start/End: Complemental strand, 43373022 - 43372844
Alignment:
| Q |
771 |
tacatcaaacaaccgatcagacttctaaaatatgcttgatcaatctttt--cagttccatcttctttgcaaagtttctcctttgaattcattggagtgct |
868 |
Q |
| |
|
|||||||||||||| || |||||||||||||| |||||||||||||||| ||||| |||||||||||| ||||||||| |||||||||||||||||| | |
|
|
| T |
43373022 |
tacatcaaacaaccaattagacttctaaaatacgcttgatcaatcttttttcagtttcatcttctttgcgaagtttctcttttgaattcattggagtggt |
43372923 |
T |
|
| Q |
869 |
catttatctacattcttcaagtttaaactttttcaaaatttcttttgcgtatttcttttgacaagtgaaaatttcatct |
947 |
Q |
| |
|
||||| | |||||||| ||||||||||| || | ||||||||||| ||||| || |||||| | |||| ||||||| |
|
|
| T |
43372922 |
catttcattgcattcttcgagtttaaacttcttaatgatttcttttgcatattttttctgacaacttaaaacttcatct |
43372844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 120; Significance: 7e-61; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 7e-61
Query Start/End: Original strand, 23 - 174
Target Start/End: Original strand, 42532502 - 42532653
Alignment:
| Q |
23 |
tgttgttaattgaacatgaaaacagttggagaaaatgaacaagacaaaggagaaataattgctttcattcatataattggtctgataatacaaactgaac |
122 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
42532502 |
tgttgttaattgaacaagaaaacagttgcagaaaatgaacaagaaaaaggagaaataactgctttcattcatataattggtctaataattcaaactgaac |
42532601 |
T |
|
| Q |
123 |
atactcacctcttttacatggtttaacaatactaaaacttccaataactacc |
174 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
42532602 |
atacacacctcttttacatagtttaacaatactaaaacttccaataactacc |
42532653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 23 - 174
Target Start/End: Original strand, 44421067 - 44421220
Alignment:
| Q |
23 |
tgttgttaattgaacatgaaaacagttggagaaaatgaacaagacaaaggagaaataattgctttcattcatataattggtctgat--aatacaaactga |
120 |
Q |
| |
|
|||||||||||||||| ||||||||||| || |||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||| || |
|
|
| T |
44421067 |
tgttgttaattgaacaagaaaacagttgcaggaaatgaacaagacaaaggagaaataactgttttcattcatataattggtctgataaaatacaaacaga |
44421166 |
T |
|
| Q |
121 |
acatactcacctcttttacatggtttaacaatac-taaaacttccaataactacc |
174 |
Q |
| |
|
||| || |||| |||||||| |||| ||||||| |||||||||||||||||||| |
|
|
| T |
44421167 |
acacac-aacctgttttacatagtttgacaatacataaaacttccaataactacc |
44421220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 23 - 174
Target Start/End: Original strand, 5530179 - 5530330
Alignment:
| Q |
23 |
tgttgttaattgaacatgaaaacagttggagaaaatgaacaagacaaaggagaaataattgctttcattcatataattggtctgataa-tacaaactgaa |
121 |
Q |
| |
|
|||||||||||||||| ||||||||||| || |||||||||||||| ||||||||||| |||||||||| || ||||||||| | || | |||||||| |
|
|
| T |
5530179 |
tgttgttaattgaacaagaaaacagttgcaggaaatgaacaagacagaggagaaataactgctttcatttatgaaattggtctaacaacaaaaaactgaa |
5530278 |
T |
|
| Q |
122 |
catactcacctcttttacatggtttaacaatactaaaacttccaataactacc |
174 |
Q |
| |
|
|| || | || |||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
5530279 |
cacac-aatctgttttacatagtttgacaatactaaaacttccaataactacc |
5530330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 70 - 172
Target Start/End: Complemental strand, 2765012 - 2764910
Alignment:
| Q |
70 |
aggagaaataattgctttcattcatataattggtctgataatacaaactgaacatactca-cctcttttacatggtttaacaatactaaaacttccaata |
168 |
Q |
| |
|
||||||||||| ||||||||||||| |||||| ||| |||| ||||| ||||||| | |||||||||||| || ||||||||||||||||||||| |
|
|
| T |
2765012 |
aggagaaataaatgctttcattcatgtaattgatct-ataaaggaaactaaacatacactgcctcttttacatatattcacaatactaaaacttccaata |
2764914 |
T |
|
| Q |
169 |
acta |
172 |
Q |
| |
|
|||| |
|
|
| T |
2764913 |
acta |
2764910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0283 (Bit Score: 109; Significance: 2e-54; HSPs: 1)
Name: scaffold0283
Description:
Target: scaffold0283; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 23 - 174
Target Start/End: Complemental strand, 16413 - 16261
Alignment:
| Q |
23 |
tgttgttaattgaacatgaaaacagttggagaaaatgaacaagacaaaggagaaataattgctttcattcatataattggtctgataatacaaactgaac |
122 |
Q |
| |
|
|||||||||||||||| ||||||||||| || |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16413 |
tgttgttaattgaacaagaaaacagttgcaggaaatgaacaagacagaggagaaataactgctttcattcatataattggtctgataatacaaactgaac |
16314 |
T |
|
| Q |
123 |
atactcacctctt-ttacatggtttaacaatactaaaacttccaataactacc |
174 |
Q |
| |
|
| || |||||||| |||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
16313 |
acacacacctcttcttacatagtttagcaatactaaaacttccaataactacc |
16261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0438 (Bit Score: 69; Significance: 2e-30; HSPs: 1)
Name: scaffold0438
Description:
Target: scaffold0438; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 862 - 946
Target Start/End: Complemental strand, 14772 - 14688
Alignment:
| Q |
862 |
gagtgctcatttatctacattcttcaagtttaaactttttcaaaatttcttttgcgtatttcttttgacaagtgaaaatttcatc |
946 |
Q |
| |
|
|||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
14772 |
gagtgctcatttctctgcatttttcaagtttaaactttttcaaaatttcttttgcgtatttcttttgacaaatgaaaatttcatc |
14688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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