View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3056-Insertion-11 (Length: 897)
Name: NF3056-Insertion-11
Description: NF3056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3056-Insertion-11 |
 | |
|
| [»] chr4 (5 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 815; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 815; E-Value: 0
Query Start/End: Original strand, 8 - 897
Target Start/End: Complemental strand, 5921862 - 5920975
Alignment:
| Q |
8 |
tttctttaatccatatctgttttcaagtttgttacatttgttcaaaaaggtttctaattttggtgtttgcttttttgtgatgcagttggtgatcttaacc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5921862 |
tttctttaatccatatctgttttcaagtttgttacatttgttcaaaaaggtttctaattttggtgtttgcttttttgtgatgcagttggtgatcttaacc |
5921763 |
T |
|
| Q |
108 |
atttgatatcagcaaccatgtctggtgtcacatgttgtttgaggttccctggtcagctaaactccgatctgaggaagcttgctgtgaatctcattccatt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5921762 |
atttgatatcagcaaccatgtctggtgtcacatgttgtttgaggttccctggtcagctaaactccgatctgaggaagcttgctgtgaatctcattccatt |
5921663 |
T |
|
| Q |
208 |
ccctcgtcttcactttttcatgttgggttttgcacctctgacttcaagaggttctcagcagtaccgggctttgagtgtaccagagctcacacagcaaatg |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
5921662 |
ccctcgtcttcactttttcatgttgggttttgcacctttgacttcaagaggttctcagcagtaccgtgctttgagtgtaccagagctcactcagcaaatg |
5921563 |
T |
|
| Q |
308 |
tgggattctaagaacatgatgtgtgctgctgaccctagacacggacgatacctcactgcatcagccatcttcagaggcaaaatgagcactaaagaagttg |
407 |
Q |
| |
|
|||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5921562 |
tgggattccaagaatatgatgtgtgctgccgaccctagacacggacgatacctcactgcatcagccatcttcagaggcaaaatgagcactaaagaagttg |
5921463 |
T |
|
| Q |
408 |
atgaacaaatgatcaatgttcagaacaagaactcgtcctacttcgtcgaatggattccaaacaatgtcaaatcaactgtttgtgatattccaccaacagg |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5921462 |
atgaacaaatgatcaatgttcagaacaagaactcatcctacttcgtcgaatggattccaaacaatgtcaaatcaactgtttgtgatattccaccaacagg |
5921363 |
T |
|
| Q |
508 |
gttgaagatggcttctacgttcattggaaactcgacatcaattcaggaaatgttccgaagggtgagtgaacagttcactgctatgttcaggagaaaggct |
607 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||| || |||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
5921362 |
gttgaagatggcttctacattcatcggaaactcaacttcaattcaagaaatgttccgaagggtgagtgagcagtttactgctatgttcaggagaaaggct |
5921263 |
T |
|
| Q |
608 |
ttcttgcattggtacacaggtgaaggaatggatgagatggagttcactgaggctgagagcaacatgaatgatcttgtgtcggaatatcaacagtatcaag |
707 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5921262 |
ttcttgcattggtacacaggtgaaggaatggatgagatggagttcactgaggctgagagcaacatgaatgatcttgtgtctgaatatcaacagtatcaag |
5921163 |
T |
|
| Q |
708 |
atgctactgcagaggaggatgagtatgaagatgaagaggaggattatcagcaggaacatgatgagatgtgagcatgttgatgctttttgcaatggataac |
807 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5921162 |
atgctactgcagaggaggatgagtatgaagatgaagaggaggattatcagcaggaacatgatgagatgtgagcatgttgatgctttttgcaatggataac |
5921063 |
T |
|
| Q |
808 |
acatatctgcaacttcctgttgccggttcgtaatctctgttgtaaggggatacttttgttccggctgttatgaaattgtttctggttttc |
897 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5921062 |
ac--atctgcaacttcctgttgccggttcgtaatctctgttgtaagggaatacttttgttccggctgttatgaaattgtttctggttttc |
5920975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 579; E-Value: 0
Query Start/End: Original strand, 78 - 772
Target Start/End: Complemental strand, 5935252 - 5934558
Alignment:
| Q |
78 |
ttttttgtgatgcagttggtgatcttaaccatttgatatcagcaaccatgtctggtgtcacatgttgtttgaggttccctggtcagctaaactccgatct |
177 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5935252 |
ttttttgtgatgcagttggtgatcttaaccatttgatatcagcaactatgtctggtgtcacatgttgtttgaggttccctggtcagctgaactccgatct |
5935153 |
T |
|
| Q |
178 |
gaggaagcttgctgtgaatctcattccattccctcgtcttcactttttcatgttgggttttgcacctctgacttcaagaggttctcagcagtaccgggct |
277 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||| || |||||||||||||| || ||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
5935152 |
taggaagcttgcagtgaatctggttccattccctcgcctccactttttcatgttagggtttgcacctttgacttcaagaggttctcagcagtacagggct |
5935053 |
T |
|
| Q |
278 |
ttgagtgtaccagagctcacacagcaaatgtgggattctaagaacatgatgtgtgctgctgaccctagacacggacgatacctcactgcatcagccatct |
377 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
5935052 |
ttgagtgttccagagatcacacagcaaatgtgggattccaagaacatgatgtgtgctgctgaccctagacacggacggtacctcactgcatcagccatct |
5934953 |
T |
|
| Q |
378 |
tcagaggcaaaatgagcactaaagaagttgatgaacaaatgatcaatgttcagaacaagaactcgtcctacttcgtcgaatggattccaaacaatgtcaa |
477 |
Q |
| |
|
|||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
5934952 |
tcagaggcaagatgagcacaaaggaagttgatgaacaaatgatcaatgttcagaacaagaactcatcctacttcgttgaatggattccaaacaatgtcaa |
5934853 |
T |
|
| Q |
478 |
atcaactgtttgtgatattccaccaacagggttgaagatggcttctacgttcattggaaactcgacatcaattcaggaaatgttccgaagggtgagtgaa |
577 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| || |||||||| ||||||||||||||||||||||| |
|
|
| T |
5934852 |
atcaactgtttgtgatattccaccaacagggttgaagatggcttctacattcatcggaaactcaacttcaattcaagaaatgttccgaagggtgagtgag |
5934753 |
T |
|
| Q |
578 |
cagttcactgctatgttcaggagaaaggctttcttgcattggtacacaggtgaaggaatggatgagatggagttcactgaggctgagagcaacatgaatg |
677 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5934752 |
cagtttactgctatgttcaggagaaaggctttcttgcattggtacacaggtgaaggaatggatgagatggagttcactgaggctgagagcaacatgaatg |
5934653 |
T |
|
| Q |
678 |
atcttgtgtcggaatatcaacagtatcaagatgctactgcagaggaggatgagtatgaagatgaagaggaggattatcagcaggaacatgatgag |
772 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5934652 |
atcttgtgtcagaatatcaacagtatcaagatgctactgcagaggaggatgagtatgaagatgaagaggaggattatcagcaggaacatgatgag |
5934558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 88 - 744
Target Start/End: Original strand, 5532251 - 5532907
Alignment:
| Q |
88 |
tgcagttggtgatcttaaccatttgatatcagcaaccatgtctggtgtcacatgttgtttgaggttccctggtcagctaaactccgatctgaggaagctt |
187 |
Q |
| |
|
||||||||||||| | || ||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||| ||||| ||||||||| |
|
|
| T |
5532251 |
tgcagttggtgatttgaatcatctgatatcagcaactatgtctggtgtcacctgttgtttgaggttccctggtcagctgaactctgatcttaggaagctt |
5532350 |
T |
|
| Q |
188 |
gctgtgaatctcattccattccctcgtcttcactttttcatgttgggttttgcacctctgacttcaagaggttctcagcagtaccgggctttgagtgtac |
287 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| |||| ||||| ||| ||||||| | || || ||||||||| || || | ||||| | |
|
|
| T |
5532351 |
gctgtgaatctcattccattcccgcgtcttcactttttcatggtgggatttgctcctttgacttcccgtggctcccagcagtacaggactctaagtgtcc |
5532450 |
T |
|
| Q |
288 |
cagagctcacacagcaaatgtgggattctaagaacatgatgtgtgctgctgaccctagacacggacgatacctcactgcatcagccatcttcagaggcaa |
387 |
Q |
| |
|
| |||||||| || |||||||||||| | ||||||||||||||||||||||||||||| || || |||||||||||||| |||||||| || |||||||| |
|
|
| T |
5532451 |
ctgagctcactcaacaaatgtgggatgccaagaacatgatgtgtgctgctgaccctaggcatgggcgatacctcactgcttcagccatgtttagaggcaa |
5532550 |
T |
|
| Q |
388 |
aatgagcactaaagaagttgatgaacaaatgatcaatgttcagaacaagaactcgtcctacttcgtcgaatggattccaaacaatgtcaaatcaactgtt |
487 |
Q |
| |
|
|||||||| || || ||||||||||||||||| ||||| |||||||||||||| |||||||| || |||||||||||||||||||| || || ||||| |
|
|
| T |
5532551 |
gatgagcaccaaggaggttgatgaacaaatgatgaatgtccagaacaagaactcatcctactttgttgaatggattccaaacaatgtgaagtctactgtc |
5532650 |
T |
|
| Q |
488 |
tgtgatattccaccaacagggttgaagatggcttctacgttcattggaaactcgacatcaattcaggaaatgttccgaagggtgagtgaacagttcactg |
587 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||| || |||||||||||||| ||||| ||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
5532651 |
tgtgatattcccccaacagggttgaaaatggcttcaacattcattggaaactccacatccattcaggaaatgttccgtagggtgagtgagcagttcactg |
5532750 |
T |
|
| Q |
588 |
ctatgttcaggagaaaggctttcttgcattggtacacaggtgaaggaatggatgagatggagttcactgaggctgagagcaacatgaatgatcttgtgtc |
687 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| ||||| || ||||| |||||||||||||||||||||||||||||||| || | |
|
|
| T |
5532751 |
ctatgttcaggagaaaggctttcttgcattggtacactggtgaaggcatggacgaaatggaattcactgaggctgagagcaacatgaatgatctggttgc |
5532850 |
T |
|
| Q |
688 |
ggaatatcaacagtatcaagatgctactgcagaggaggatgagtatgaagatgaaga |
744 |
Q |
| |
|
|| ||||||||||| |||||||| || || || ||||||||||||| ||| ||||| |
|
|
| T |
5532851 |
tgagtatcaacagtaccaagatgccaccgctgatgaggatgagtatggagaagaaga |
5532907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 103; E-Value: 9e-51
Query Start/End: Original strand, 152 - 738
Target Start/End: Complemental strand, 38177502 - 38176916
Alignment:
| Q |
152 |
ttccctggtcagctaaactccgatctgaggaagcttgctgtgaatctcattccattccctcgtcttcactttttcatgttgggttttgcacctctgactt |
251 |
Q |
| |
|
|||||||| ||||| ||||| ||||| || ||||||||||| || || || |||||||||||||| || || || ||| | || |||||||| |||| | |
|
|
| T |
38177502 |
ttccctgggcagctgaactctgatcttagaaagcttgctgtcaaccttatcccattccctcgtctccatttctttatggttgggtttgcacccttgacat |
38177403 |
T |
|
| Q |
252 |
caagaggttctcagcagtaccgggctttgagtgtaccagagctcacacagcaaatgtgggattctaagaacatgatgtgtgctgctgaccctagacacgg |
351 |
Q |
| |
|
||||||| || || |||||||| ||| ||| || || | || ||||| ||||||||| ||||||| |||||||| ||||| || || | ||||| |
|
|
| T |
38177402 |
caagaggatcccaacagtaccgcaacttgtctgtgcctgaattgactcagcagatgtgggatgctaagaatatgatgtgcgctgcagatccacgccacgg |
38177303 |
T |
|
| Q |
352 |
acgatacctcactgcatcagccatcttcagaggcaaaatgagcactaaagaagttgatgaacaaatgatcaatgttcagaacaagaactcgtcctacttc |
451 |
Q |
| |
|
|| || | ||||| ||||| || ||| | || || |||||||| || || || || || || ||||| ||||| |||||||| ||||| || ||||| |
|
|
| T |
38177302 |
tcgttatttgactgcttcagcaatgttccgtggtaagatgagcaccaaggaggtggacgagcagatgattaatgtacagaacaaaaactcttcttacttt |
38177203 |
T |
|
| Q |
452 |
gtcgaatggattccaaacaatgtcaaatcaactgtttgtgatattccaccaacagggttgaagatggcttctacgttcattggaaactcgacatcaattc |
551 |
Q |
| |
|
|| || ||||| || ||||| ||||| || | || |||||||| |||||||| || | ||| |||| || || |||||||| || || ||||| |||| |
|
|
| T |
38177202 |
gttgagtggatacccaacaacgtcaagtctagcgtgtgtgatataccaccaacgggtcttaagttggcatccactttcattggcaattcaacatctattc |
38177103 |
T |
|
| Q |
552 |
aggaaatgttccgaagggtgagtgaacagttcactgctatgttcaggagaaaggctttcttgcattggtacacaggtgaaggaatggatgagatggagtt |
651 |
Q |
| |
|
| || |||||| | || || || || |||||||| |||||||| ||| | ||||||||||||||||||||||| ||||| ||||||||||| |||||||| |
|
|
| T |
38177102 |
aagagatgttcaggagagtcagcgagcagttcacagctatgtttaggcgcaaggctttcttgcattggtacactggtgagggaatggatgaaatggagtt |
38177003 |
T |
|
| Q |
652 |
cactgaggctgagagcaacatgaatgatcttgtgtcggaatatcaacagtatcaagatgctactgcagaggaggatgagtatgaaga |
738 |
Q |
| |
|
||||||||| ||||| |||||||||||| | ||| | || || || || || || ||||||||||| || ||||| ||||||||||| |
|
|
| T |
38177002 |
cactgaggccgagagtaacatgaatgatttggtggcagagtaccagcaataccaggatgctactgctgatgaggaagagtatgaaga |
38176916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 816 - 896
Target Start/End: Complemental strand, 5934494 - 5934412
Alignment:
| Q |
816 |
gcaacttcctgttgccggttcgtaatctc--tgttgtaaggggatacttttgttccggctgttatgaaattgtttctggtttt |
896 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||| |||||| ||| ||||| ||||||| |||||||| ||||| |||| |
|
|
| T |
5934494 |
gcaacttcctgttgccggttcataatctctttgttgttgggggatgcttatgttctggctgttctgaaattgattctgatttt |
5934412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 166; Significance: 2e-88; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 87 - 712
Target Start/End: Complemental strand, 40916851 - 40916226
Alignment:
| Q |
87 |
atgcagttggtgatcttaaccatttgatatcagcaaccatgtctggtgtcacatgttgtttgaggttccctggtcagctaaactccgatctgaggaagct |
186 |
Q |
| |
|
|||||||||||||| | ||||||||||||||| |||| ||| ||| || |||||||| | | || ||||| || || ||||| ||||| ||||| | |
|
|
| T |
40916851 |
atgcagttggtgatttgaaccatttgatatcaacaacaatgagtggagtaacatgttgcctccgatttcctggccaactcaactctgatcttaggaaatt |
40916752 |
T |
|
| Q |
187 |
tgctgtgaatctcattccattccctcgtcttcactttttcatgttgggttttgcacctctgacttcaagaggttctcagcagtaccgggctttgagtgta |
286 |
Q |
| |
|
|| || || ||||| || ||||| ||||| |||||||||||| | |||||||| || | || ||||| |||||||| |||||| | | | | | |
|
|
| T |
40916751 |
agcagttaacctcatccctttcccacgtctacactttttcatggttggttttgctcccttaacatcaaggggttctcaacagtacagttccctcaccatt |
40916652 |
T |
|
| Q |
287 |
ccagagctcacacagcaaatgtgggattctaagaacatgatgtgtgctgctgaccctagacacggacgatacctcactgcatcagccatcttcagaggca |
386 |
Q |
| |
|
||||| ||||||||||||||||||||| | | |||||||||||||||||||| || ||||| || | || || || || || || || ||| | |||| |
|
|
| T |
40916651 |
ccagaactcacacagcaaatgtgggatgcaagaaacatgatgtgtgctgctgatccaagacatggtaggtatctaacagcctcggcaatgttccgtggca |
40916552 |
T |
|
| Q |
387 |
aaatgagcactaaagaagttgatgaacaaatgatcaatgttcagaacaagaactcgtcctacttcgtcgaatggattccaaacaatgtcaaatcaactgt |
486 |
Q |
| |
|
|||||||||| |||||||||||| |||| ||||| ||||||||||||||||||||||| ||||| || |||||||||||||||||||| ||||||| ||| |
|
|
| T |
40916551 |
aaatgagcacaaaagaagttgatcaacagatgataaatgttcagaacaagaactcgtcttactttgtggaatggattccaaacaatgtgaaatcaagtgt |
40916452 |
T |
|
| Q |
487 |
ttgtgatattccaccaacagggttgaagatggcttctacgttcattggaaactcgacatcaattcaggaaatgttccgaagggtgagtgaacagttcact |
586 |
Q |
| |
|
|||||||||||| |||||||||||| |||| |||| || || || || || |||||||| ||||| |||||||| || | || || ||||| ||| |
|
|
| T |
40916451 |
ttgtgatattccgccaacagggttgtcgatgtcttcgacatttatggggaattcgacatctattcaagaaatgtttagacgtgtttcggagcagtttact |
40916352 |
T |
|
| Q |
587 |
gctatgttcaggagaaaggctttcttgcattggtacacaggtgaaggaatggatgagatggagttcactgaggctgagagcaacatgaatgatcttgtgt |
686 |
Q |
| |
|
| |||||| | ||||||||| || ||||||||||| || | |||||||||||||||||||||||| |||||||||||||| || ||||||||| | || | |
|
|
| T |
40916351 |
gttatgtttaagagaaaggcatttttgcattggtatactgctgaaggaatggatgagatggagtttactgaggctgagagtaatatgaatgatttggttt |
40916252 |
T |
|
| Q |
687 |
cggaatatcaacagtatcaagatgct |
712 |
Q |
| |
|
| ||||||||||| |||||||||||| |
|
|
| T |
40916251 |
ctgaatatcaacaatatcaagatgct |
40916226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 90 - 699
Target Start/End: Original strand, 45320029 - 45320638
Alignment:
| Q |
90 |
cagttggtgatcttaaccatttgatatcagcaaccatgtctggtgtcacatgttgtttgaggttccctggtcagctaaactccgatctgaggaagcttgc |
189 |
Q |
| |
|
||||||| ||| | || |||||||| |||||||| ||| ||| || || ||||| || || ||||| ||||||||||| || || ||| ||||||| || |
|
|
| T |
45320029 |
cagttggagatttgaatcatttgatctcagcaacaatgagtggagtgacttgttgcttaagattcccgggtcagctaaattcagacctgcggaagctagc |
45320128 |
T |
|
| Q |
190 |
tgtgaatctcattccattccctcgtcttcactttttcatgttgggttttgcacctctgacttcaagaggttctcagcagtaccgggctttgagtgtacca |
289 |
Q |
| |
|
||||| | || ||||| || || |||||||| |||||| ||||||| || || ||||| || ||| || ||| | ||||| || | | |||||| |
|
|
| T |
45320129 |
agtgaacttgatcccatttccacgccttcacttcttcatggtgggtttcgctcccctgacatctcaaggatcgcagaactaccgtgcacttaccgtacca |
45320228 |
T |
|
| Q |
290 |
gagctcacacagcaaatgtgggattctaagaacatgatgtgtgctgctgaccctagacacggacgatacctcactgcatcagccatcttcagaggcaaaa |
389 |
Q |
| |
|
|| || ||||| || ||||||||| | ||||||||||||||||| || || || | || || || || | || || ||||| | || ||||| |||| |
|
|
| T |
45320229 |
gaacttacacaacagatgtgggatgccaagaacatgatgtgtgcggcggatccacgccatggccgttatttaacagcctcagcggtgtttagagggaaaa |
45320328 |
T |
|
| Q |
390 |
tgagcactaaagaagttgatgaacaaatgatcaatgttcagaacaagaactcgtcctacttcgtcgaatggattccaaacaatgtcaaatcaactgtttg |
489 |
Q |
| |
|
||||||| |||||||| |||||||| | || ||||| ||||||||||| || || |||||||| ||||||||||| || ||||| || || | ||| || |
|
|
| T |
45320329 |
tgagcacaaaagaagtggatgaacaggtaatgaatgtgcagaacaagaattcttcttacttcgttgaatggattcccaataatgtgaagtccagtgtctg |
45320428 |
T |
|
| Q |
490 |
tgatattccaccaacagggttgaagatggcttctacgttcattggaaactcgacatcaattcaggaaatgttccgaagggtgagtgaacagttcactgct |
589 |
Q |
| |
|
|||| | ||||| | ||| | ||||||||| || || |||| || |||||||| || ||||| ||||| | || ||||||||||||||| |||| |
|
|
| T |
45320429 |
tgatgtcccacctagaggcctttcgatggcttcgacatttgttggcaattcgacatctatacaggagatgtttaggagagtgagtgaacagttctctgcc |
45320528 |
T |
|
| Q |
590 |
atgttcaggagaaaggctttcttgcattggtacacaggtgaaggaatggatgagatggagttcactgaggctgagagcaacatgaatgatcttgtgtcgg |
689 |
Q |
| |
|
|||||||| || || || |||||||||||||| || || |||||||||||||| ||||| || ||||| || || ||||| |||||||||||||| | | |
|
|
| T |
45320529 |
atgttcagaaggaaagcattcttgcattggtataccggagaaggaatggatgaaatggaatttactgaagcagaaagcaatatgaatgatcttgttgctg |
45320628 |
T |
|
| Q |
690 |
aatatcaaca |
699 |
Q |
| |
|
|||||||||| |
|
|
| T |
45320629 |
aatatcaaca |
45320638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 158; Significance: 1e-83; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 152 - 717
Target Start/End: Original strand, 34841384 - 34841949
Alignment:
| Q |
152 |
ttccctggtcagctaaactccgatctgaggaagcttgctgtgaatctcattccattccctcgtcttcactttttcatgttgggttttgcacctctgactt |
251 |
Q |
| |
|
||||| ||||| || ||||| ||||| |||| || || ||||||||||| ||||||||||| || ||||| |||||| | |||||||| ||||| || | |
|
|
| T |
34841384 |
ttcccgggtcaactcaactctgatctccggaaactggcagtgaatctcatcccattccctcgcctgcacttcttcatggttggttttgctcctcttacat |
34841483 |
T |
|
| Q |
252 |
caagaggttctcagcagtaccgggctttgagtgtaccagagctcacacagcaaatgtgggattctaagaacatgatgtgtgctgctgaccctagacacgg |
351 |
Q |
| |
|
| | || |||||||| ||||| || |||| ||| ||||| ||||| ||||| ||||||||||| || |||||||||||||||||||| ||||| || || |
|
|
| T |
34841484 |
cccgtggctctcagcaataccgtgcattgactgttccagaactcacccagcagatgtgggattccaaaaacatgatgtgtgctgctgatcctaggcatgg |
34841583 |
T |
|
| Q |
352 |
acgatacctcactgcatcagccatcttcagaggcaaaatgagcactaaagaagttgatgaacaaatgatcaatgttcagaacaagaactcgtcctacttc |
451 |
Q |
| |
|
|||||||||||||| || ||||| ||||| || || |||||||| ||||| || ||||| |||||||| ||||| |||||||||||||| |||||||| |
|
|
| T |
34841584 |
tcgatacctcactgcgtctgccatgttcaggggtaagatgagcaccaaagaggtggatgagcaaatgataaatgtccagaacaagaactcttcctacttt |
34841683 |
T |
|
| Q |
452 |
gtcgaatggattccaaacaatgtcaaatcaactgtttgtgatattccaccaacagggttgaagatggcttctacgttcattggaaactcgacatcaattc |
551 |
Q |
| |
|
|| || ||||| || |||||||| || |||| ||||||||| ||| | || | ||| | ||||| || || || || || ||||| || ||||||| |
|
|
| T |
34841684 |
gttgagtggatccccaacaatgttaagtcaagtgtttgtgacattgctcctagaggtctctccatggcctccacctttatcggtaactcaacctcaattc |
34841783 |
T |
|
| Q |
552 |
aggaaatgttccgaagggtgagtgaacagttcactgctatgttcaggagaaaggctttcttgcattggtacacaggtgaaggaatggatgagatggagtt |
651 |
Q |
| |
|
|||||||||| | |||||||| || || || || |||||||| ||||| ||||||||||||||||||||||| |||||||| |||||||| ||||| || |
|
|
| T |
34841784 |
aggaaatgtttaggagggtgagcgagcaatttaccgctatgtttaggaggaaggctttcttgcattggtacactggtgaaggcatggatgaaatggaatt |
34841883 |
T |
|
| Q |
652 |
cactgaggctgagagcaacatgaatgatcttgtgtcggaatatcaacagtatcaagatgctactgc |
717 |
Q |
| |
|
||| || || ||||||||||||||||| || ||||| || || || ||||| || ||||| ||||| |
|
|
| T |
34841884 |
cacagaagcagagagcaacatgaatgacctcgtgtctgagtaccagcagtaccaggatgccactgc |
34841949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 149; Significance: 3e-78; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 194 - 750
Target Start/End: Complemental strand, 45452878 - 45452322
Alignment:
| Q |
194 |
aatctcattccattccctcgtcttcactttttcatgttgggttttgcacctctgacttcaagaggttctcagcagtaccgggctttgagtgtaccagagc |
293 |
Q |
| |
|
||||||||||| ||||||||| | || || |||||| |||| ||||| || || ||||| | ||||| ||||||||| | ||| | | |||||| |||| |
|
|
| T |
45452878 |
aatctcattcctttccctcgtttgcatttcttcatggtgggatttgccccactcacttctcgtggttcacagcagtacagagctcttactgtacctgagc |
45452779 |
T |
|
| Q |
294 |
tcacacagcaaatgtgggattctaagaacatgatgtgtgctgctgaccctagacacggacgatacctcactgcatcagccatcttcagaggcaaaatgag |
393 |
Q |
| |
|
| || ||||| ||||||||||| |||||||||||||| || ||||| ||| | ||||| || || | || ||||| ||||| ||| | || || ||||| |
|
|
| T |
45452778 |
tgacccagcagatgtgggattcaaagaacatgatgtgcgccgctgatcctcgccacggtcgttatttgacagcatctgccatgttccgtggtaagatgag |
45452679 |
T |
|
| Q |
394 |
cactaaagaagttgatgaacaaatgatcaatgttcagaacaagaactcgtcctacttcgtcgaatggattccaaacaatgtcaaatcaactgtttgtgat |
493 |
Q |
| |
|
||| || || |||||||| || ||||||||||||||||||||||| || || ||||| || || |||||||| |||||||| ||||| ||||| |||||| |
|
|
| T |
45452678 |
caccaaggaggttgatgagcagatgatcaatgttcagaacaagaattcatcatactttgttgagtggattcccaacaatgtgaaatccactgtctgtgat |
45452579 |
T |
|
| Q |
494 |
attccaccaacagggttgaagatggcttctacgttcattggaaactcgacatcaattcaggaaatgttccgaagggtgagtgaacagttcactgctatgt |
593 |
Q |
| |
|
|| || ||||| || | || ||||||||||| || ||||| ||||| ||||| ||||| |||||||| | ||||||||||| || ||||| ||||||| |
|
|
| T |
45452578 |
atccctccaactggtcttaaaatggcttctacttttattggtaactccacatctattcaagaaatgtttaggagggtgagtgagcaattcacggctatgt |
45452479 |
T |
|
| Q |
594 |
tcaggagaaaggctttcttgcattggtacacaggtgaaggaatggatgagatggagttcactgaggctgagagcaacatgaatgatcttgtgtcggaata |
693 |
Q |
| |
|
|| | ||||| ||||||||||||||||| || || || || ||||||||||||||||| ||||| || || |||||||||||||| ||||| || || || |
|
|
| T |
45452478 |
tccgcagaaaagctttcttgcattggtatactggagagggtatggatgagatggagtttactgaagcagaaagcaacatgaatgaccttgtctcagagta |
45452379 |
T |
|
| Q |
694 |
tcaacagtatcaagatgctactgcagaggaggatgagtatgaagatgaagaggagga |
750 |
Q |
| |
|
|| || || ||||||||||||||||| || || | |||||| ||||||| ||||| |
|
|
| T |
45452378 |
ccagcaataccaagatgctactgcagatgaagaggggtatgactatgaagatgagga |
45452322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 140; Significance: 7e-73; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 7e-73
Query Start/End: Original strand, 88 - 675
Target Start/End: Complemental strand, 53146578 - 53145991
Alignment:
| Q |
88 |
tgcagttggtgatcttaaccatttgatatcagcaaccatgtctggtgtcacatgttgtttgaggttccctggtcagctaaactccgatctgaggaagctt |
187 |
Q |
| |
|
||||||||| ||||| |||||| |||| || ||||| ||| ||| || || |||||| ||||||| ||||| || | ||||| ||||| |||||||| |
|
|
| T |
53146578 |
tgcagttggggatctgaaccatctgatttccgcaactatgagtggggttacctgttgtctgaggtttcctggacaattgaactctgatctcaggaagctg |
53146479 |
T |
|
| Q |
188 |
gctgtgaatctcattccattccctcgtcttcactttttcatgttgggttttgcacctctgacttcaagaggttctcagcagtaccgggctttgagtgtac |
287 |
Q |
| |
|
||||| ||||| || |||||||| |||||||||||||| ||| | || ||||||||||| ||||| | || ||||||||||| | | | ||| | |
|
|
| T |
53146478 |
gctgtcaatctgatcccattcccacgtcttcacttttttatggttgggtttgcacctctcacttctcgtgggtctcagcagtatgtatcccttactgtcc |
53146379 |
T |
|
| Q |
288 |
cagagctcacacagcaaatgtgggattctaagaacatgatgtgtgctgctgaccctagacacggacgatacctcactgcatcagccatcttcagaggcaa |
387 |
Q |
| |
|
| || || || || ||||||||||| | ||||| ||||||||||||||||||||| |||| || |||||| | |||||||| || || |||||||| || |
|
|
| T |
53146378 |
cggaactgactcaacaaatgtgggacgccaagaatatgatgtgtgctgctgaccctcgacatggtcgatacttaactgcatctgcaatgttcagaggaaa |
53146279 |
T |
|
| Q |
388 |
aatgagcactaaagaagttgatgaacaaatgatcaatgttcagaacaagaactcgtcctacttcgtcgaatggattccaaacaatgtcaaatcaactgtt |
487 |
Q |
| |
|
|||||||| ||||| |||||||||||||| |||||||| ||||||||||| || || ||||| || ||||||||||| |||||||| || || | ||| |
|
|
| T |
53146278 |
gatgagcaccaaagaggttgatgaacaaatcatcaatgtgcagaacaagaattcttcatactttgttgaatggattcccaacaatgtgaagtctagtgtg |
53146179 |
T |
|
| Q |
488 |
tgtgatattccaccaacagggttgaagatggcttctacgttcattggaaactcgacatcaattcaggaaatgttccgaagggtgagtgaacagttcactg |
587 |
Q |
| |
|
|||||||| ||||| | ||||||||| | || || || ||||| ||||| || ||||||||||| |||||| | ||||| ||||| ||||| |||| |
|
|
| T |
53146178 |
tgtgatatcccacccaagaatttgaagatgtcgtccacttttattgggaactctacttcaattcaggagatgttcaggagggtcagtgagcagtttactg |
53146079 |
T |
|
| Q |
588 |
ctatgttcaggagaaaggctttcttgcattggtacacaggtgaaggaatggatgagatggagttcactgaggctgagagcaacatgaa |
675 |
Q |
| |
|
| |||||| || | ||||| || ||||||||||| || || || ||||||||||||||||||||||| ||||| || || |||||||| |
|
|
| T |
53146078 |
caatgttccggcgcaaggcctttttgcattggtatactggggagggaatggatgagatggagttcacggaggcagaaagtaacatgaa |
53145991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 133; Significance: 1e-68; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 152 - 684
Target Start/End: Complemental strand, 11732358 - 11731826
Alignment:
| Q |
152 |
ttccctggtcagctaaactccgatctgaggaagcttgctgtgaatctcattccattccctcgtcttcactttttcatgttgggttttgcacctctgactt |
251 |
Q |
| |
|
|||||||| || || ||||| ||||| | ||||||||||| ||||| || ||||||||||| || || || |||||| | || |||||||| |||| | |
|
|
| T |
11732358 |
ttccctggacaactgaactctgatcttcgtaagcttgctgtcaatcttatcccattccctcggctccatttcttcatggttgggtttgcacccttgacat |
11732259 |
T |
|
| Q |
252 |
caagaggttctcagcagtaccgggctttgagtgtaccagagctcacacagcaaatgtgggattctaagaacatgatgtgtgctgctgaccctagacacgg |
351 |
Q |
| |
|
||||||| || ||||| || || ||||||| ||||||||| | || ||||| ||||||||||| ||||||||||||||||||||||| || | || || |
|
|
| T |
11732258 |
caagaggatcccagcaatatcgtgctttgactgtaccagaattgactcagcagatgtgggattcaaagaacatgatgtgtgctgctgatccacgccatgg |
11732159 |
T |
|
| Q |
352 |
acgatacctcactgcatcagccatcttcagaggcaaaatgagcactaaagaagttgatgaacaaatgatcaatgttcagaacaagaactcgtcctacttc |
451 |
Q |
| |
|
|| || | || |||||||| || ||| | || || |||||||| || ||||| ||||| || ||||||||||| || ||||||||||| || ||||| |
|
|
| T |
11732158 |
ccgttatttgaccgcatcagcaatgttccgtggtaagatgagcacaaaggaagtagatgagcagatgatcaatgtgcaaaacaagaactcttcatacttt |
11732059 |
T |
|
| Q |
452 |
gtcgaatggattccaaacaatgtcaaatcaactgtttgtgatattccaccaacagggttgaagatggcttctacgttcattggaaactcgacatcaattc |
551 |
Q |
| |
|
|| || ||||| ||||| ||||| || || | || |||||||| ||||||| || | |||||||| || || ||||| || || || || || || | |
|
|
| T |
11732058 |
gttgagtggataccaaataatgttaagtccagcgtatgtgatatcccaccaaagggccttaagatggcatcaactttcatcggtaattcaacttcgatcc |
11731959 |
T |
|
| Q |
552 |
aggaaatgttccgaagggtgagtgaacagttcactgctatgttcaggagaaaggctttcttgcattggtacacaggtgaaggaatggatgagatggagtt |
651 |
Q |
| |
|
|||| |||||| | || || ||||| |||||||| |||||||| ||| | ||||||||||||||||||||||| ||||| |||||||| || |||||||| |
|
|
| T |
11731958 |
aggagatgttcaggagagttagtgagcagttcacagctatgtttaggcgcaaggctttcttgcattggtacactggtgagggaatggacgaaatggagtt |
11731859 |
T |
|
| Q |
652 |
cactgaggctgagagcaacatgaatgatcttgt |
684 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |
|
|
| T |
11731858 |
cactgaggctgagagtaacatgaatgatcttgt |
11731826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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