View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3056-Insertion-12 (Length: 829)
Name: NF3056-Insertion-12
Description: NF3056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3056-Insertion-12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 258 - 653
Target Start/End: Original strand, 45209275 - 45209645
Alignment:
| Q |
258 |
gatgatgaagagaacatatatcatatcatgacaagtagtattttgtaaatttaatgtcgtcgataggcaagttatagggactgtagctataagagtttta |
357 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
45209275 |
gatgatgaagagagcatatatcatatcatgacaagtagtattttgtaaatttaatgtcgtcgataggcaagttatagg-actgtagctataagagtttta |
45209373 |
T |
|
| Q |
358 |
caaatttactacacctgccttgcctctgacaatttatgtaattcttctttttacaaatatgtttctcataatgctgacttataaacaagatgttttctca |
457 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45209374 |
caaatttactacacctgccttgcctctgacaatttatgtaattcttctttttacaaatatgtttctcataatgctgacttataaacaagatgttttctca |
45209473 |
T |
|
| Q |
458 |
attgacaatttttcatgaatacatttttgggtgatcatgaatatattttttgagtgcactgctatgtgttgttgaggatgctaataagctagaggttatc |
557 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45209474 |
attgacaatttttcatgaatatatttt----------------------ttgagtgcactgctatgtgttgttgaggatgctaataagctagaggttatc |
45209551 |
T |
|
| Q |
558 |
tctcatatactcaaagatgtctatgtaaatgaagtgggggagaattcaaaacaagatacaataagagttgtatataaattgcaaagataaggtttc |
653 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
45209552 |
tctcatatactcaaagatgtctatgtaaatgaagtgggggagaattcaaaacaagatacaatatgagttg--tataaattgcaaagataaggtttc |
45209645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 7 - 147
Target Start/End: Original strand, 45208182 - 45208324
Alignment:
| Q |
7 |
attatcgagtttcatgtgcaattgcatgatttggaagatcaacattgtaaaaatatatgatgaacttgctgttatgatt-aatttcccaa-ttgagaagt |
104 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
45208182 |
attatcgagtttcatgtgcaattgcatgctttggaagatcaaacatgtaaaaatatatgatgaacttgctgttatgattaaatttcccaatttgagaagt |
45208281 |
T |
|
| Q |
105 |
gacagtaacaataatatatatcttctctgcatgaaccgtctaa |
147 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45208282 |
gacagtaacaataatatatatcttctctgcatgaaccgtctaa |
45208324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 731 - 828
Target Start/End: Original strand, 45209724 - 45209821
Alignment:
| Q |
731 |
gtctgagtaacacaaagctattttgttttccattctagctcaccatgtcagcttctatcttagcaaatttcatagcaattgatttatattgttaacta |
828 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45209724 |
gtctgagtaacacaaagctattttgttttccattctagctcaccatgtcagcttctatcttagcaaatttcatagcaattgatttatattgttaacta |
45209821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 112; Significance: 3e-56; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 468 - 652
Target Start/End: Original strand, 27749480 - 27749659
Alignment:
| Q |
468 |
tttcatgaatacatttttgggtgatcatgaatatattttttgagtgcactgctatgtgttgttgaggatgctaataagctagaggttatctctcatatac |
567 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||| || |||||||||||||||||||||||||||||||||||| | |||| ||||| |||||| |
|
|
| T |
27749480 |
tttcatgaatacatttttgggtgatcataaagatatttttcgaatgcactgctatgtgttgttgaggatgctaataagctgggggttgtctctgatatac |
27749579 |
T |
|
| Q |
568 |
tcaaagatgtctatgtaaatgaagtgggggagaattcaaaacaagatacaataagagttgtatataaattgcaaagataaggttt |
652 |
Q |
| |
|
||| ||||||||| ||||||||||||| | ||||||||||||||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
27749580 |
tcatagatgtctaagtaaatgaagtggagaagaattcaaaacaagat---ataagagttg--tataaattgcaaagataaggttt |
27749659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 758 - 828
Target Start/End: Original strand, 27750159 - 27750228
Alignment:
| Q |
758 |
ttccattctagctcaccatgtcagcttctatcttagcaaatttcatagcaattgatttatattgttaacta |
828 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
27750159 |
ttccattcttgctcaccatgtcagcttctatctt-gcaaatttcatagcaattgatttatattgttaacta |
27750228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 7e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 7 - 119
Target Start/End: Original strand, 42084051 - 42084164
Alignment:
| Q |
7 |
attatcgagtttcatgtgcaattgcatgatttggaagatcaacattgtaaaaatatatgatgaacttgctgttatgatt-aatttcccaattgagaagtg |
105 |
Q |
| |
|
|||||| |||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
42084051 |
attatccagtttcatgtacaattgcatgctttggaagatcaaacatgtaaaaatatatgatgaacttgctgttatgattaaatttcccaattgagaagtg |
42084150 |
T |
|
| Q |
106 |
acagtaacaataat |
119 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
42084151 |
acattaacaataat |
42084164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 735 - 828
Target Start/End: Complemental strand, 674933 - 674841
Alignment:
| Q |
735 |
gagtaacacaaagctattttgttttccattctagctcaccatgtcagcttctatcttagcaaatttcatagcaattgatttatattgttaacta |
828 |
Q |
| |
|
|||||| |||||| ||||| || ||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
674933 |
gagtaatacaaagatatttggtcttccattcttgctcaccatgtcagcttctatctt-gcaaatttcatagcaattggtttatattgttaacta |
674841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 562 - 652
Target Start/End: Complemental strand, 675091 - 675003
Alignment:
| Q |
562 |
atatactcaaagatgtctatgtaaatgaagtgggggagaattcaaaacaagatacaataagagttgtatataaattgcaaagataaggttt |
652 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |||||||||||||||||||| || |||||||| |||||||||||||||| |||||| |
|
|
| T |
675091 |
atatactcaaagatgtctaagtaaatgaagtggaggagaattcaaaacaagatataacaagagttg--tataaattgcaaagatgaggttt |
675003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 749 - 825
Target Start/End: Complemental strand, 22352552 - 22352476
Alignment:
| Q |
749 |
tattttgttttccattctagctcaccatgtcagcttctatcttagcaaatttcatagcaattgatttatattgttaa |
825 |
Q |
| |
|
||||| || ||||||||| | ||||||||||| |||||||| || |||||| |||||||||||||||| | |||||| |
|
|
| T |
22352552 |
tatttggtcttccattcttgttcaccatgtcaacttctatcgtaccaaattgcatagcaattgatttaaaatgttaa |
22352476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University