View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3056-Insertion-17 (Length: 589)
Name: NF3056-Insertion-17
Description: NF3056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3056-Insertion-17 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 6 - 589
Target Start/End: Original strand, 6236286 - 6236867
Alignment:
| Q |
6 |
catatagtagtagtactagttctttgacatgatgtttgttcaccggtcaaggcaataatatcatggtgtttctaaattatagtgttcccacattcaacaa |
105 |
Q |
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| T |
6236286 |
catatagtagtagtactagttctttgacatgatgtttgttcactggtcaaggcaata-tatcatggtgtttctaaattttagtgttcccacattcaacaa |
6236384 |
T |
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| Q |
106 |
aagtagaagaagtctacgaaaccatatttcccctttcgctttagttaatagaaattgaaaacctaggtgataggtgaaaatctaannnnnnnnnnnnnga |
205 |
Q |
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| T |
6236385 |
aagtagaagaagtctacgaaaccatatttcccctttcgctttagttaatagaaattgaaaacctaggtgataggtgaaaatctaattttttttttttt-a |
6236483 |
T |
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| Q |
206 |
tcaagcgaagaaattcgataaaactagagagggccagaacccataacaaggtctacatcaggaagaaacaaaaacagaaaaggcagaattacatcaaaat |
305 |
Q |
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| T |
6236484 |
tcaagcgaagaaattcaataaaactgaagagggccagaacccataacaaagtctacatcaggaagaaacaaaaatagaaaaggcagaattacatcaaaat |
6236583 |
T |
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| Q |
306 |
cctataataaggaagtcctgaaccctctctagagagaaaagaagcaataaagctgggtggtgagatcctccattgagaagagaaggtaggtaaactcttc |
405 |
Q |
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| T |
6236584 |
cctataataaggaagtcctgaaccctctctagagagaaaagaagcaataaagcagggtggtgagatcctccattgagaagagaaggtaggtaaactcttc |
6236683 |
T |
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| Q |
406 |
gtatttttcaccatagcgtcagcagctgcattcccttcccggtgtatgtgagagcaaacacaactgagactttagatatttagataggtgaaaatctaat |
505 |
Q |
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| T |
6236684 |
gtatttttcgccatagcgtcagcagctgcattcccttcccggtgtatgtgagagcaaacacaagtgagactttagatatttagataggtgaaaatctaat |
6236783 |
T |
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| Q |
506 |
caaaaattaaaatgtttgatgaatttagatannnnnnnnaaacatataaacttgtgttctgaattaaagaaagtgattatcatc |
589 |
Q |
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| T |
6236784 |
caaaaattaaaatgtttgatgaatttagatattttttttaaacatataaacttgtgttctgaattaaagaaagtgattatcatc |
6236867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 85 - 190
Target Start/End: Complemental strand, 33891908 - 33891807
Alignment:
| Q |
85 |
tagtgttcccacattcaacaaaagtagaagaagtctacgaaaccatatttcccctttcgctttagttaatagaaattgaaaacctaggtgataggtgaaa |
184 |
Q |
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| T |
33891908 |
tagtgtccccacattcaacaaaagtaaaagaagtcctagaaaccatatttcccttttcactttagtta----taattgaaaacctagtttatgggtgaaa |
33891813 |
T |
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| Q |
185 |
atctaa |
190 |
Q |
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| T |
33891812 |
atctaa |
33891807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 85 - 190
Target Start/End: Original strand, 33952340 - 33952441
Alignment:
| Q |
85 |
tagtgttcccacattcaacaaaagtagaagaagtctacgaaaccatatttcccctttcgctttagttaatagaaattgaaaacctaggtgataggtgaaa |
184 |
Q |
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|||||| ||||||||||||||||||| |||||||| ||||||||||||||| |||| ||||||||| |||||||||||||| | || ||||||| |
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| T |
33952340 |
tagtgtccccacattcaacaaaagtaaaagaagtcctagaaaccatatttcccttttcactttagtta----taattgaaaacctagtttatgggtgaaa |
33952435 |
T |
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| Q |
185 |
atctaa |
190 |
Q |
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|||||| |
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| T |
33952436 |
atctaa |
33952441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 492 - 535
Target Start/End: Complemental strand, 33891819 - 33891773
Alignment:
| Q |
492 |
ggtgaaaatctaatcaa---aaattaaaatgtttgatgaatttagat |
535 |
Q |
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| T |
33891819 |
ggtgaaaatctaatcgattgaaattaaaatgtttgatgaatttagat |
33891773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 492 - 535
Target Start/End: Original strand, 33952429 - 33952475
Alignment:
| Q |
492 |
ggtgaaaatctaatcaa---aaattaaaatgtttgatgaatttagat |
535 |
Q |
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| T |
33952429 |
ggtgaaaatctaatcgattgaaattaaaatgtttgatgaatttagat |
33952475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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