View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3056-Insertion-19 (Length: 486)
Name: NF3056-Insertion-19
Description: NF3056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3056-Insertion-19 |
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| [»] chr1 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 6 - 486
Target Start/End: Original strand, 37558094 - 37558574
Alignment:
| Q |
6 |
caaaaaagtcctacgcatggctgttgatgcttggcagaagatgtctgccaccgataaagaggtatgataaataaaattgacataatatcgataattgatc |
105 |
Q |
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| T |
37558094 |
caaaaaagtcctacgcatggctgttgatgcttggcagaagatgtctgccaccgataaagaggtatgataaataaaattgacataatatcgataattgatc |
37558193 |
T |
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| Q |
106 |
aaatgtcgaacaatttatatttttgcaattagcctctactttgtttgtttgaaatttaccatttctaattacttttttatgtagccatatgtggaggaaa |
205 |
Q |
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| T |
37558194 |
aaatgtcgaacaatttatatttttgcaattagcctctactttgtttgtttgaaacttaccatttctaattacttttttatgtagccatatgtggaggaaa |
37558293 |
T |
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| Q |
206 |
gcaggaagataaaggaaaaacagaaggaagcaatgatcactgacaataaacagaagagcactgaagatcttaagatggatgaacagaagagccctgaagt |
305 |
Q |
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| T |
37558294 |
gcaggaagataaaggaaaaacagaaggaagcaatgatcactgacaataaacagaagagcactgaagatcttaagaaggatgaacagaagagcactgaagt |
37558393 |
T |
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| Q |
306 |
tcttaagaaggatgagaagaagagcactcaaggtcttaatctaaagaaggatgacaagatgcctggtgtggatggtgacgactacggtgtaacttcgcaa |
405 |
Q |
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| T |
37558394 |
tcttaagaaggatgaaaagaagagcactcaaggtcttaatctaaagaaggatgacaagatgcctggtgtggatggtgacgactatggtgtaacttcgcaa |
37558493 |
T |
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| Q |
406 |
cctctaccaaattattcttttgtcaacaatgcagctgtggagttggctttcaaaatgactgaaaaatcactcaaggatccc |
486 |
Q |
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| T |
37558494 |
cctctaccaaattattcttttgtcaacaatgcagctgtggagttggctttcaaaatgactgaaaaatcactcaaggatccc |
37558574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 118 - 288
Target Start/End: Original strand, 41553598 - 41553767
Alignment:
| Q |
118 |
atttatatttttgcaattagcctctactttgtttgtttgaaatttaccatttctaattacttttttatgtagccatatgtggaggaaagcaggaagataa |
217 |
Q |
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||||||| ||||||||||||||| || || |||| |||||||||| | | |||||||| ||||| || ||||||||||| |||||||||| ||| |||| |
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| T |
41553598 |
atttatagttttgcaattagcctatagttggtttatttgaaatttgcaacttctaattgcttttc-atttagccatatgtagaggaaagcaagaaaataa |
41553696 |
T |
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| Q |
218 |
aggaaaaacagaaggaagcaatgatcactgacaataaacagaagagcactgaagatcttaagatggatgaa |
288 |
Q |
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| T |
41553697 |
aggaaaaaaacaaagaagcaatgatcattgacattaaacagaagagcacccaagatcttaagagggatgaa |
41553767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 396 - 485
Target Start/End: Original strand, 41553803 - 41553892
Alignment:
| Q |
396 |
aacttcgcaacctctaccaaattattcttttgtcaacaatgcagctgtggagttggctttcaaaatgactgaaaaatcactcaaggatcc |
485 |
Q |
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| T |
41553803 |
aacttcacaagctctatcaaattactcttttgtcaacagtgcagcagcggacttggctttcaaaatgacagaaaaaacatccaaggatcc |
41553892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 151 - 222
Target Start/End: Original strand, 34257041 - 34257111
Alignment:
| Q |
151 |
tgtttgaaatttaccatttctaattacttttttatgtagccatatgtggaggaaagcaggaagataaaggaa |
222 |
Q |
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| T |
34257041 |
tgtttgaaattcgccatttctaattacttttc-atgtagccatatgaagaggcaagcatgaagataaaggaa |
34257111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 151 - 222
Target Start/End: Original strand, 34257377 - 34257447
Alignment:
| Q |
151 |
tgtttgaaatttaccatttctaattacttttttatgtagccatatgtggaggaaagcaggaagataaaggaa |
222 |
Q |
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| T |
34257377 |
tgtttgaaatttgccacttctaattacatttc-atgtagccatatgaagaggaaagcatgaagataaaggaa |
34257447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 392 - 486
Target Start/End: Complemental strand, 4444886 - 4444792
Alignment:
| Q |
392 |
gtgtaacttcgcaacctctaccaaattattcttttgtcaacaatgcagctgtggagttggctttcaaaatgactgaaaaatcactcaaggatccc |
486 |
Q |
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| T |
4444886 |
gtgtaactttgcaacctctaacaaattactcttttgtcaacaacgcagccgcaaacgtggcttttgaaatgactgaaaaaacattcaagaatccc |
4444792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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