View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3056-Insertion-22 (Length: 452)

Name: NF3056-Insertion-22
Description: NF3056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3056-Insertion-22
NF3056-Insertion-22
[»] chr6 (24 HSPs)
chr6 (8-452)||(33285176-33285620)
chr6 (137-413)||(33304195-33304468)
chr6 (157-408)||(28870198-28870446)
chr6 (138-413)||(33644564-33644836)
chr6 (157-413)||(33262357-33262610)
chr6 (137-413)||(9166472-9166736)
chr6 (153-405)||(33387881-33388130)
chr6 (141-384)||(31562877-31563117)
chr6 (154-290)||(33057306-33057442)
chr6 (157-413)||(33409709-33409956)
chr6 (333-413)||(33398958-33399038)
chr6 (213-413)||(33271582-33271776)
chr6 (153-283)||(33398799-33398929)
chr6 (137-210)||(33358644-33358717)
chr6 (333-413)||(33057470-33057550)
chr6 (7-47)||(33644942-33644982)
chr6 (333-379)||(33358800-33358846)
chr6 (7-72)||(33358499-33358564)
chr6 (7-72)||(33387738-33387803)
chr6 (137-183)||(33271515-33271561)
chr6 (7-40)||(31563224-31563257)
chr6 (10-47)||(33271409-33271446)
chr6 (7-47)||(33057147-33057187)
chr6 (7-47)||(33304062-33304102)
[»] scaffold1408 (1 HSPs)
scaffold1408 (137-413)||(355-628)
[»] scaffold0428 (1 HSPs)
scaffold0428 (137-413)||(6101-6374)
[»] chr4 (10 HSPs)
chr4 (147-413)||(31479032-31479295)
chr4 (132-290)||(31499199-31499357)
chr4 (147-289)||(31472695-31472837)
chr4 (326-413)||(31157123-31157210)
chr4 (333-409)||(31148192-31148268)
chr4 (236-290)||(31148107-31148161)
chr4 (137-283)||(31156934-31157080)
chr4 (326-413)||(31472571-31472661)
chr4 (333-406)||(31504224-31504297)
chr4 (222-284)||(31017356-31017418)
[»] chr2 (1 HSPs)
chr2 (137-413)||(17440904-17441159)
[»] chr7 (1 HSPs)
chr7 (251-283)||(6785526-6785558)


Alignment Details
Target: chr6 (Bit Score: 425; Significance: 0; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 8 - 452
Target Start/End: Original strand, 33285176 - 33285620
Alignment:
Q  8 gtagattatccatagatgacttgatttggtcgtaataagatatctcttaagaattactggaacacaaaaggaagaaagagaatcaataaccaattttata 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  33285176 gtagattatccatagatgacttgatttggtcgtaataagatatctcttaagaattactggaacactaaaggaagaaagagaatcaataaccaattttata 33285275  T
Q  108 tcggctatccatggaaggatctcttgattaggtgccacggaaaacactgcacaacatacaaagccaatgatattattgttattgtcatacataataggag 207  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  33285276 tcggctatccacggaaggatctcttgattaggtgccacggaaaacactgcacaacatacaaagccaatgatattattgttattgtcatgcataataggag 33285375  T
Q  208 atctgtctattggtattgaactacccacgctctgattgttaatccaacttggtatttcacttcctggagtaacaatatgaatcccttcaaataaggacgc 307  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33285376 atctgtctattggtattgaactacccacgctctgattattaatccaacttggtatttcacttcctggagtaacaatatgaatcccttcaaataaggacgc 33285475  T
Q  308 agggtaaaagtgttggtatgcctggatgaattgtatcatccatgaaaatgccatgctactgcaacgttccctttcacctaattttggacagttgaaaatg 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33285476 agggtaaaagtgttggtatgcctggatgaattgtatcatccatgaaaatgccatgctactgcaacgttccctttcacctaattttggacagttgaaaatg 33285575  T
Q  408 accaattgtgtaacttttctaggaaaaaggtcatgaaacttgttg 452  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  33285576 accaattgtgtaacttttctagtaaaaaggtcatgaaacttgttg 33285620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 137 - 413
Target Start/End: Original strand, 33304195 - 33304468
Alignment:
Q  137 aggtgccacggaaaacactgcacaacatacaaagccaatgatattattgttattgtcatacataataggagatctgtctattggtattgaactacccacg 236  Q
    |||||||| |||||| || |||||||||| |||||||||||||| |||||||||||||| |||||||||||||| ||||||| ||||||||  |||||||    
T  33304195 aggtgccatggaaaataccgcacaacatagaaagccaatgatataattgttattgtcatgcataataggagatcggtctatttgtattgaatcacccacg 33304294  T
Q  237 ctctgattgttaatccaacttggtatttcacttcctggagtaacaatatgaatcccttcaaataaggacgcagggtaaaagtgttggtatgcctggatga 336  Q
    |||| |||||| |||||| ||||||||||| |||||||||||||||| |||||||  |||   ||||||| ||||||  | |||  || |||||  ||||    
T  33304295 ctcttattgttgatccaaattggtatttcatttcctggagtaacaatttgaatccaatca---aaggacgtagggtaggattgtgagtttgcctcaatga 33304391  T
Q  337 attgtatcatccatgaaaatgccatgctactgcaacgttccctttcacctaattttggacagttgaaaatgaccaat 413  Q
    ||||| ||| ||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||    
T  33304392 attgtgtcaaccatgaaaatgtcatgctactgcaacgttccctctcacccaattttggacagttgaaaatgaacaat 33304468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 157 - 408
Target Start/End: Complemental strand, 28870446 - 28870198
Alignment:
Q  157 cacaacatacaaagccaatgatattattgttattgtcatacataataggagatctgtctattggtattgaactacccacgctctgattgttaatccaact 256  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||||||  ||||||| ||||||||| ||||| |||||||||||||||||||||    
T  28870446 cacaacatacaaagccaatgatattattgttattgtcatttataataggagattcgtctatttgtattgaaccacccatgctctgattgttaatccaact 28870347  T
Q  257 tggtatttcacttcctggagtaacaatatgaatc-ccttcaaataaggacgcagggtaaaagtgttggtatgcctggatgaattgtatcatccatgaaaa 355  Q
    ||||||||||||||||||||||||||||| || | | | ||||||  ||  || ||||  | ||| |||||||| | ||||||||| |||||||||||||    
T  28870346 tggtatttcacttcctggagtaacaatattaaacgcatccaaata--ga--caaggtaggattgtcggtatgcccgaatgaattgtttcatccatgaaaa 28870251  T
Q  356 tgccatgctactgcaacgttccctttcacctaattttggacagttgaaaatga 408  Q
    |||||||||||  ||||||||||| |||||||| |||||||||||||||||||    
T  28870250 tgccatgctacaacaacgttccctctcacctaaatttggacagttgaaaatga 28870198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 138 - 413
Target Start/End: Complemental strand, 33644836 - 33644564
Alignment:
Q  138 ggtgccacggaaaacactgcacaacatacaaagccaatgatattattgttattgtcatacataataggagatctgtctattggtattgaactacccacgc 237  Q
    ||||||| || ||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||  ||||||| ||||||||  |||||| |    
T  33644836 ggtgccatggtaaatactgcacaacatacaaatccaatgatattattgttattgtcatgcataataggagattcgtctatttgtattgaataacccacac 33644737  T
Q  238 tctgattgttaatccaacttggtatttcacttcctggagtaacaatatgaatcccttcaaataaggacgcagggtaaaagtgttggtatgcctggatgaa 337  Q
    | |||||||| ||||||||||||||||||||||||||||| ||||| ||| |||  |||   ||| | |  |||||  | ||| ||| |||||| |||||    
T  33644736 tttgattgttgatccaacttggtatttcacttcctggagttacaatttgagtcctatca---aagtaggttgggtaggattgtaggtttgcctgaatgaa 33644640  T
Q  338 ttgtatcatccatgaaaatgccatgctactgcaacgttccctttcacctaattttggacagttgaaaatgaccaat 413  Q
    |||||||||||||||||||| |||||| |||||||||||||| ||||| ||||||| |||||||||||||||||||    
T  33644639 ttgtatcatccatgaaaatgtcatgctcctgcaacgttccctctcacccaattttgaacagttgaaaatgaccaat 33644564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 157 - 413
Target Start/End: Original strand, 33262357 - 33262610
Alignment:
Q  157 cacaacatacaaagccaatgatattattgttattgtcatacataataggagatctgtctattggtattgaactacccacgctctgattgttaatccaact 256  Q
    ||||||||| |||||||||||||||||||||||| |||| ||||||||||| |  ||||| ||||||||||  ||||| |||||||||||| ||||||||    
T  33262357 cacaacatagaaagccaatgatattattgttattatcatgcataataggagtttggtctactggtattgaatcacccatgctctgattgttgatccaact 33262456  T
Q  257 tggtatttcacttcctggagtaacaatatgaatc-ccttcaaataaggacgcagggtaaaagtgttggtatgcctggatgaattgtatcatccatgaaaa 355  Q
    |||||||||| |||||||| ||||||| |||| | | | |||||||    | ||||||  | ||||||||||| || ||||||||| || ||||||||||    
T  33262457 tggtatttcatttcctggactaacaatttgaaactcatccaaataa----gtagggtaggattgttggtatgcttgaatgaattgtgtcgtccatgaaaa 33262552  T
Q  356 tgccatgctactgcaacgttccctttcacctaattttggacagttgaaaatgaccaat 413  Q
    || ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  33262553 tgtcatgctactgcaacgttccctctcacccaattttggacagttgaaaatgaccaat 33262610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 137 - 413
Target Start/End: Original strand, 9166472 - 9166736
Alignment:
Q  137 aggtgccacggaaaacactgcacaacatacaaagccaatgatattattgttattgtcatacataataggagatctgtctattggtattgaactacccacg 236  Q
    |||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |  |||||||||||| |||| | |||||    
T  9166472 aggtgccatggagaatactgcacaacatacaaagccaatgatattattgttattgtcatgcataataggagttaggtctattggtatcgaaccatccacg 9166571  T
Q  237 ctctgattgttaatccaacttggtatttcacttcctggagtaacaatatgaatcccttcaaataaggacgcagggtaaaagtgttggtatgcctggatga 336  Q
    ||| ||||||| |||||||||||||||||| ||||||| |||||||| |||||||  |||||   ||| |            || ||| |||||| || |    
T  9166572 ctccgattgttgatccaacttggtatttcaattcctggcgtaacaatttgaatcctatcaaagtgggatg------------gtgggtttgcctgaataa 9166659  T
Q  337 attgtatcatccatgaaaatgccatgctactgcaacgttccctttcacctaattttggacagttgaaaatgaccaat 413  Q
    |||| |||||||||||||||| ||||||||||||| ||||| | ||||  |||| ||||||||||||||||||||||    
T  9166660 attgcatcatccatgaaaatgtcatgctactgcaatgttccttatcactcaattctggacagttgaaaatgaccaat 9166736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 153 - 405
Target Start/End: Original strand, 33387881 - 33388130
Alignment:
Q  153 actgcacaacatacaaagccaatgatattattgttattgtcatacataataggagatctgtctattggtattgaactacccacgctctgattgttaatcc 252  Q
    ||||||||||||| ||||||||||||||||||||||||||||| |||||||||  || |||||||| ||||||||  ||||| |||||||||||| ||||    
T  33387881 actgcacaacatagaaagccaatgatattattgttattgtcatgcataataggcaatttgtctattagtattgaatcacccatgctctgattgttgatcc 33387980  T
Q  253 aacttggtatttcacttcctggagtaacaatatgaatcccttcaaataaggacgcagggtaaaagtgttggtatgcctggatgaattgtatcatccatga 352  Q
    |||| |||||||||||||||| ||||||||| ||||||   |||||  ||   ||||||||    ||| ||| |||||  || |||||| ||||||||||    
T  33387981 aactcggtatttcacttcctgtagtaacaatttgaatcgtatcaaaatag---gcagggtaggtttgtcggtttgccttaataaattgtgtcatccatga 33388077  T
Q  353 aaatgccatgctactgcaacgttccctttcacctaattttggacagttgaaaa 405  Q
    ||||| ||||||||||||||  ||||| ||||| | |||||||||||||||||    
T  33388078 aaatgtcatgctactgcaacactccctatcacccagttttggacagttgaaaa 33388130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 141 - 384
Target Start/End: Complemental strand, 31563117 - 31562877
Alignment:
Q  141 gccacggaaaacactgcacaacatacaaagccaatgatattattgttattgtcatacataataggagatctgtctattggtattgaactacccacgctct 240  Q
    ||||||||||| |||||||||||||||||||||||||||| |||| ||||||||| ||||  ||||||    |||||||||||||||  ||||| ||| |    
T  31563117 gccacggaaaatactgcacaacatacaaagccaatgatatcattgatattgtcatgcataggaggagagaactctattggtattgaatcacccatgctat 31563018  T
Q  241 gattgttaatccaacttggtatttcacttcctggagtaacaatatgaatcccttcaaataaggacgcagggtaaaagtgttggtatgcctggatgaattg 340  Q
    ||||||| |||||| | ||||||||||||||||||  ||||||||||| | | || ||  ||   ||||||||  ||||| | |||||||  ||||||||    
T  31563017 gattgttgatccaattcggtatttcacttcctggaacaacaatatgaaactcatccaaatag---gcagggtaggagtgtggatatgccttaatgaattg 31562921  T
Q  341 tatcatccatgaaaatgccatgctactgcaacgttccctttcac 384  Q
    |  |||||||||||||| |||||| |||||| | ||||| ||||    
T  31562920 tgccatccatgaaaatgtcatgctcctgcaatgctccctctcac 31562877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 154 - 290
Target Start/End: Original strand, 33057306 - 33057442
Alignment:
Q  154 ctgcacaacatacaaagccaatgatattattgttattgtcatacataataggagatctgtctattggtattgaactacccacgctctgattgttaatcca 253  Q
    |||||||||||||||  |||||||||||||||| |||||||| | |||||||||||| |||||||| |||||||  |||||  ||||||||||| |||||    
T  33057306 ctgcacaacatacaataccaatgatattattgtcattgtcatgcctaataggagatcggtctattgctattgaataacccatcctctgattgttgatcca 33057405  T
Q  254 acttggtatttcacttcctggagtaacaatatgaatc 290  Q
    |||||||||||||||||||||| |||| || ||||||    
T  33057406 acttggtatttcacttcctggattaactatttgaatc 33057442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 157 - 413
Target Start/End: Original strand, 33409709 - 33409956
Alignment:
Q  157 cacaacatacaaagccaatgatattattgttattgtcatacataataggagatctgtctattggtattgaactacccacgctctgattgttaatccaact 256  Q
    |||||| |||||||||||| |||||||||||||||||||  |||| |||||||   || |||| |||||||  |||||||||||||||||| ||||||||    
T  33409709 cacaacttacaaagccaataatattattgttattgtcatttataacaggagattcatcaattgatattgaagcacccacgctctgattgttgatccaact 33409808  T
Q  257 tggtatttcacttcctggagtaacaatatgaatc-ccttcaaataaggacgcagggtaaaagtgttggtatgcctggatgaattgtatcatccatgaaaa 355  Q
    ||||||||||||||||||||| ||||| |||| | ||  ||| |      |  ||||     ||||||| |||||| ||||| |||  |||||||||||     
T  33409809 tggtatttcacttcctggagttacaatttgaagcgccgacaatt-----tgttgggt-----tgttggtttgcctgaatgaaatgtgccatccatgaaat 33409898  T
Q  356 tgccatgctactgcaacgttccctttcacctaattttggacagttgaaaatgaccaat 413  Q
    ||  |||||||||||||||||||| ||| | |||||||||||||||||||||| ||||    
T  33409899 tgtgatgctactgcaacgttccctctcaaccaattttggacagttgaaaatgaacaat 33409956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 333 - 413
Target Start/End: Original strand, 33398958 - 33399038
Alignment:
Q  333 atgaattgtatcatccatgaaaatgccatgctactgcaacgttccctttcacctaattttggacagttgaaaatgaccaat 413  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||    
T  33398958 atgaattgtatcatccatgaaaatgtcatgctactgcaacgttccctctcacccaattttgaacagttgaaaatgaccaat 33399038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 213 - 413
Target Start/End: Original strand, 33271582 - 33271776
Alignment:
Q  213 tctattggtattgaactacccacgctctgattgttaatccaacttggtatttcacttcctggagtaacaatatgaatc-ccttcaaataaggacgcaggg 311  Q
    ||||||||||| |||  ||||| |||||||||||| ||||||||||||||||||||||||||||| | |||||||| | | ||||||||||             
T  33271582 tctattggtatcgaatcacccatgctctgattgttgatccaacttggtatttcacttcctggagttataatatgaaactcattcaaataag--------- 33271672  T
Q  312 taaaagtgttggtatgcctggatgaattgtatcatccatgaaaatgccatgctactgcaacgttccctttcac------ctaattttggacagttgaaaa 405  Q
        | ||  ||| ||||   ||||||||||||||||||||||||| || |||||||||||||||||| ||||      | |||||||||||||||||||    
T  33271673 ----attgcgggtttgccataatgaattgtatcatccatgaaaatgtcaagctactgcaacgttccctctcacagtcagccaattttggacagttgaaaa 33271768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 153 - 283
Target Start/End: Original strand, 33398799 - 33398929
Alignment:
Q  153 actgcacaacatacaaagccaatgatattattgttattgtcatacataataggagatctgtctattggtattgaactacccacgctctgattgttaatcc 252  Q
    ||||||||||||||||||  |  | | | ||||||||| |||| ||||  |||||||  ||||||| ||||||||  |||||| | ||||||||| ||||    
T  33398799 actgcacaacatacaaagtaatggctctgattgttattatcatgcatagcaggagataggtctatttgtattgaatcacccacacactgattgttgatcc 33398898  T
Q  253 aacttggtatttcacttcctggagtaacaat 283  Q
    ||||||||||||||||||||||| |||||||    
T  33398899 aacttggtatttcacttcctggaataacaat 33398929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 137 - 210
Target Start/End: Original strand, 33358644 - 33358717
Alignment:
Q  137 aggtgccacggaaaacactgcacaacatacaaagccaatgatattattgttattgtcatacataataggagatc 210  Q
    ||||| || |||||| ||||||||||||||||| ||||||| ||||||||||||||||| | ||||||||||||    
T  33358644 aggtgtcatggaaaatactgcacaacatacaaaaccaatgacattattgttattgtcatgcctaataggagatc 33358717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 333 - 413
Target Start/End: Original strand, 33057470 - 33057550
Alignment:
Q  333 atgaattgtatcatccatgaaaatgccatgctactgcaacgttccctttcacctaattttggacagttgaaaatgaccaat 413  Q
    ||||||||| |||||||| ||| || |||||| |||||| ||||||| ||||| |||||||||||||||||||||| ||||    
T  33057470 atgaattgtttcatccataaaagtgtcatgctcctgcaatgttccctctcacccaattttggacagttgaaaatgagcaat 33057550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 33644982 - 33644942
Alignment:
Q  7 agtagattatccatagatgacttgatttggtcgtaataaga 47  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  33644982 agtagattatccataggtgacttgatttggtcgtaataaga 33644942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 333 - 379
Target Start/End: Original strand, 33358800 - 33358846
Alignment:
Q  333 atgaattgtatcatccatgaaaatgccatgctactgcaacgttccct 379  Q
    ||||||||| |||||||||||| || |||||||||||||||||||||    
T  33358800 atgaattgtttcatccatgaaagtgtcatgctactgcaacgttccct 33358846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 33358499 - 33358564
Alignment:
Q  7 agtagattatccatagatgacttgatttggtcgtaataagatatctcttaagaattactggaacac 72  Q
    ||||||||||||| || ||||||||||||| ||||||||||  ||  || ||||||||||||||||    
T  33358499 agtagattatccacaggtgacttgatttgggcgtaataagacctccattgagaattactggaacac 33358564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 33387738 - 33387803
Alignment:
Q  7 agtagattatccatagatgacttgatttggtcgtaataagatatctcttaagaattactggaacac 72  Q
    |||||||||||||||| ||||||||||||||||||| ||||  ||  || ||||| ||||||||||    
T  33387738 agtagattatccataggtgacttgatttggtcgtaacaagacctccattgagaatgactggaacac 33387803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 33271515 - 33271561
Alignment:
Q  137 aggtgccacggaaaacactgcacaacatacaaagccaatgatattat 183  Q
    ||||||||||||||| ||| |||| ||||||||||||||| ||||||    
T  33271515 aggtgccacggaaaatactacacagcatacaaagccaatggtattat 33271561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 40
Target Start/End: Complemental strand, 31563257 - 31563224
Alignment:
Q  7 agtagattatccatagatgacttgatttggtcgt 40  Q
    |||||||||||||||| |||||||||||||||||    
T  31563257 agtagattatccataggtgacttgatttggtcgt 31563224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 47
Target Start/End: Original strand, 33271409 - 33271446
Alignment:
Q  10 agattatccatagatgacttgatttggtcgtaataaga 47  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  33271409 agatcatccataggtgacttgatttggtcgtaataaga 33271446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 33057147 - 33057187
Alignment:
Q  7 agtagattatccatagatgacttgatttggtcgtaataaga 47  Q
    ||||||| |||||||| ||||||||||||||||||| ||||    
T  33057147 agtagataatccataggtgacttgatttggtcgtaacaaga 33057187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 33304062 - 33304102
Alignment:
Q  7 agtagattatccatagatgacttgatttggtcgtaataaga 47  Q
    |||||||||||||||| ||||||||||||||| ||| ||||    
T  33304062 agtagattatccataggtgacttgatttggtcataacaaga 33304102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408 (Bit Score: 121; Significance: 8e-62; HSPs: 1)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 137 - 413
Target Start/End: Original strand, 355 - 628
Alignment:
Q  137 aggtgccacggaaaacactgcacaacatacaaagccaatgatattattgttattgtcatacataataggagatctgtctattggtattgaactacccacg 236  Q
    |||||||| | |||| ||||||||| |||||||||||||||||||||| ||||||||||  |||| |||||||  ||||||| ||||||||| ||||| |    
T  355 aggtgccatgcaaaatactgcacaaaatacaaagccaatgatattattcttattgtcatgtataacaggagattcgtctattagtattgaaccacccatg 454  T
Q  237 ctctgattgttaatccaacttggtatttcacttcctggagtaacaatatgaatc-ccttcaaataaggacgcagggtaaaagtgttggtatgcctggatg 335  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||| |||| | | | |||||| ||||     |||  | ||||||| |||||| |||    
T  455 ctctgattgttgatccagcttggtatttcacttcctggagtaacaatttgaagctcatacaaatacggac----cgtaggattgttggtttgcctgaatg 550  T
Q  336 aattgtatcatccatgaaaatgccatgctactgcaacgttccctttcacctaattttggacagttgaaaatgaccaat 413  Q
    |||||| |||||||||||||||  |||||||| |||| |||||| ||||| |||||||||||||||||||||||||||    
T  551 aattgtttcatccatgaaaatgttatgctactacaacattccctctcacccaattttggacagttgaaaatgaccaat 628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 121; Significance: 8e-62; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 137 - 413
Target Start/End: Original strand, 6101 - 6374
Alignment:
Q  137 aggtgccacggaaaacactgcacaacatacaaagccaatgatattattgttattgtcatacataataggagatctgtctattggtattgaactacccacg 236  Q
    |||||||| | |||| ||||||||| |||||||||||||||||||||| ||||||||||  |||| |||||||  ||||||| ||||||||| ||||| |    
T  6101 aggtgccatgcaaaatactgcacaaaatacaaagccaatgatattattcttattgtcatgtataacaggagattcgtctattagtattgaaccacccatg 6200  T
Q  237 ctctgattgttaatccaacttggtatttcacttcctggagtaacaatatgaatc-ccttcaaataaggacgcagggtaaaagtgttggtatgcctggatg 335  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||| |||| | | | |||||| ||||     |||  | ||||||| |||||| |||    
T  6201 ctctgattgttgatccagcttggtatttcacttcctggagtaacaatttgaagctcatacaaatacggac----cgtaggattgttggtttgcctgaatg 6296  T
Q  336 aattgtatcatccatgaaaatgccatgctactgcaacgttccctttcacctaattttggacagttgaaaatgaccaat 413  Q
    |||||| |||||||||||||||  |||||||| |||| |||||| ||||| |||||||||||||||||||||||||||    
T  6297 aattgtttcatccatgaaaatgttatgctactacaacattccctctcacccaattttggacagttgaaaatgaccaat 6374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 4e-45; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 147 - 413
Target Start/End: Complemental strand, 31479295 - 31479032
Alignment:
Q  147 gaaaacactgcacaacatacaaagccaatgatattattgttattgtcatacataataggagatctgtctattggtattgaactacccacgctctgattgt 246  Q
    ||||| ||| ||||||||||| |||||| |||||||||||||||||| | |||||| |||||    |||||| ||||| || |||||  |||||||||||    
T  31479295 gaaaatactacacaacatacacagccaacgatattattgttattgtcgtgcataatcggagaagaatctattcgtattaaattacccttgctctgattgt 31479196  T
Q  247 taatccaacttggtatttcacttcctggagtaacaatatgaatcccttcaaataaggacgcagggtaaaagtgttggtatgcctggatgaattgtatcat 346  Q
    | | ||||||||| |||||||| |||||||||||||| |||| ||  ||| |   |||  || || | || ||| ||| |||||| ||||||||||||||    
T  31479195 tgaaccaacttggcatttcactacctggagtaacaatttgaaccctatcaga---ggagtcatgggagaattgtcggtttgcctgaatgaattgtatcat 31479099  T
Q  347 ccatgaaaatgccatgctactgcaacgttccctttcacctaattttggacagttgaaaatgaccaat 413  Q
    ||||||||||| ||||||||| ||||||||| ||||||| ||||| |||||||||||||||| ||||    
T  31479098 ccatgaaaatgtcatgctactccaacgttccgtttcacccaatttaggacagttgaaaatgaacaat 31479032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 132 - 290
Target Start/End: Complemental strand, 31499357 - 31499199
Alignment:
Q  132 tgattaggtgccacggaaaacactgcacaacatacaaagccaatgatattattgttattgtcatacataataggagatctgtctattggtattgaactac 231  Q
    |||| ||||||||  ||||| |||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||  ||||||| ||||||||  ||    
T  31499357 tgatgaggtgccatagaaaatactgcacaacatacaaagccaatgatattattgttattgtcatggataatgggagatgagtctattcgtattgaatcac 31499258  T
Q  232 ccacgctctgattgttaatccaacttggtatttcacttcctggagtaacaatatgaatc 290  Q
    ||  ||||||||| |||| |||||||| |||||||||||||||||||||||||||||||    
T  31499257 ccttgctctgattcttaaaccaacttgatatttcacttcctggagtaacaatatgaatc 31499199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 147 - 289
Target Start/End: Complemental strand, 31472837 - 31472695
Alignment:
Q  147 gaaaacactgcacaacatacaaagccaatgatattattgttattgtcatacataataggagatctgtctattggtattgaactacccacgctctgattgt 246  Q
    ||||| ||| ||||||||| | | ||||||||||||||||||||||||| |||||| ||||||  ||||| | |||| |||  ||||  | |||||||||    
T  31472837 gaaaatactacacaacatatacaaccaatgatattattgttattgtcatgcataatgggagatgagtctaatcgtatcgaatcacccttgttctgattgt 31472738  T
Q  247 taatccaacttggtatttcacttcctggagtaacaatatgaat 289  Q
    | | ||||||||||||||||||||||||||||||||| |||||    
T  31472737 tgaaccaacttggtatttcacttcctggagtaacaatctgaat 31472695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 326 - 413
Target Start/End: Original strand, 31157123 - 31157210
Alignment:
Q  326 tgcctggatgaattgtatcatccatgaaaatgccatgctactgcaacgttccctttcacctaattttggacagttgaaaatgaccaat 413  Q
    |||||| || |||||||||||||||||||||||||||||| |||||  ||| || ||||| ||||| |||||||||||||||||||||    
T  31157123 tgcctgaatcaattgtatcatccatgaaaatgccatgctattgcaatcttcactctcacccaatttaggacagttgaaaatgaccaat 31157210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 333 - 409
Target Start/End: Original strand, 31148192 - 31148268
Alignment:
Q  333 atgaattgtatcatccatgaaaatgccatgctactgcaacgttccctttcacctaattttggacagttgaaaatgac 409  Q
    |||| |||||||||||||||||||  ||||||| | |||| |||||| ||||| ||||| |||||||||||||||||    
T  31148192 atgagttgtatcatccatgaaaatatcatgctattccaacattccctctcacccaatttaggacagttgaaaatgac 31148268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 236 - 290
Target Start/End: Original strand, 31148107 - 31148161
Alignment:
Q  236 gctctgattgttaatccaacttggtatttcacttcctggagtaacaatatgaatc 290  Q
    |||||||||||| | ||||||||||||||||||||| ||||||||||| ||||||    
T  31148107 gctctgattgttgaaccaacttggtatttcacttcccggagtaacaatttgaatc 31148161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 137 - 283
Target Start/End: Original strand, 31156934 - 31157080
Alignment:
Q  137 aggtgccacggaaaacactgcacaacatacaaagccaatgatattattgttattgtcatacataataggagatctgtctattggtattgaactacccacg 236  Q
    |||||| ||||| || |||||||||||  ||| |||||||| || ||||| |||||  | ||||||  |||||  ||| |||  |||||||  |||| ||    
T  31156934 aggtgcaacggagaatactgcacaacaagcaatgccaatgaaatcattgtcattgttgtccataatctgagataggtccattcttattgaatcaccctcg 31157033  T
Q  237 ctctgattgttaatccaacttggtatttcacttcctggagtaacaat 283  Q
    ||||||||||| | |||| |||||||||||||||| ||| |||||||    
T  31157034 ctctgattgttgaaccaaattggtatttcacttccaggaataacaat 31157080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 326 - 413
Target Start/End: Complemental strand, 31472661 - 31472571
Alignment:
Q  326 tgcctggatgaattgtatcatccatgaaaatgccatgctactgcaac---gttccctttcacctaattttggacagttgaaaatgaccaat 413  Q
    |||||| |||| |||||||||||||||||||| |||| || ||||||   ||||||| ||||| || || |||||||||||||||| ||||    
T  31472661 tgcctgaatgagttgtatcatccatgaaaatgtcatgttagtgcaacaatgttccctctcacccaaattaggacagttgaaaatgagcaat 31472571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 333 - 406
Target Start/End: Complemental strand, 31504297 - 31504224
Alignment:
Q  333 atgaattgtatcatccatgaaaatgccatgctactgcaacgttccctttcacctaattttggacagttgaaaat 406  Q
    ||||||||||||||||||||||||| ||| ||| || | | |||||| ||| | ||||| ||||||||||||||    
T  31504297 atgaattgtatcatccatgaaaatgtcattctaatgtagcattccctctcatccaatttaggacagttgaaaat 31504224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 284
Target Start/End: Original strand, 31017356 - 31017418
Alignment:
Q  222 attgaactacccacgctctgattgttaatccaacttggtatttcacttcctggagtaacaata 284  Q
    |||||| |||| | |||||||||||| | ||| ||||||||||||||||| ||| ||||||||    
T  31017356 attgaattacctaggctctgattgttcaaccaccttggtatttcacttccaggaataacaata 31017418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 137 - 413
Target Start/End: Complemental strand, 17441159 - 17440904
Alignment:
Q  137 aggtgccacggaaaacactgcacaacatacaaagccaatgatattattgttattgtcatacataataggagatctgtctattggtattgaactacccacg 236  Q
    |||||||| |||||| ||||||||||||||||| ||||||||||||||||      ||| | |||||||||||  |||||||  |||||||  |||||||    
T  17441159 aggtgccatggaaaatactgcacaacatacaaaaccaatgatattattgt------catgcttaataggagattggtctattcttattgaatcacccacg 17441066  T
Q  237 ctctgattgttaatccaacttggtatttcacttcctggagtaacaatatgaatcc-cttcaaataaggacgcagggtaaaagtgttggtatgcctggatg 335  Q
    |||| |||||| ||||||||||||||||| ||||||||| |||||||||||||||  ||||||||             ||||    ||| |||||  |||    
T  17441065 ctcttattgttgatccaacttggtatttcgcttcctggactaacaatatgaatcctattcaaata------------gaaag----ggtttgccttaatg 17440982  T
Q  336 aattgtatcatccatgaaaatgccatgctactgcaacgttccctttcacctaattttggacagttgaaaatgaccaat 413  Q
    ||||| |||||||||||||||| |||||||||| ||| |||||| ||||| ||||||||||||||||| |||| ||||    
T  17440981 aattgcatcatccatgaaaatgtcatgctactgtaacattccctctcacccaattttggacagttgaagatgaacaat 17440904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 283
Target Start/End: Complemental strand, 6785558 - 6785526
Alignment:
Q  251 ccaacttggtatttcacttcctggagtaacaat 283  Q
    ||||||||||||||||||||||||| |||||||    
T  6785558 ccaacttggtatttcacttcctggaataacaat 6785526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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