View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3056-Insertion-26 (Length: 402)
Name: NF3056-Insertion-26
Description: NF3056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3056-Insertion-26 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 126; Significance: 7e-65; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 101 - 230
Target Start/End: Complemental strand, 52327603 - 52327474
Alignment:
| Q |
101 |
actattatttattattaaagaaatacctgcaccaccgagaaaataggacttggtggacgacggaggtgtcaccactgccggaaattcaatgaactccacc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
52327603 |
actattatttattattaaagaaatacctgcaccaccgagaaaataggacttggtggacgacggaggtgtcaccactaccggaaattcaatgaactccacc |
52327504 |
T |
|
| Q |
201 |
ttcactccggtgatcatgaatgctgccttt |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
52327503 |
ttcactccggtgatcatgaatgctgccttt |
52327474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 271 - 402
Target Start/End: Complemental strand, 52325609 - 52325478
Alignment:
| Q |
271 |
ttcgaatgttgaagttgtcaatcttcataaactcataaaatcttgtagccaaactctctttcaaagcaggggaaacaggaatttctccaatcattgtctc |
370 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
52325609 |
ttcgaatgttgaagttgtcaatcttcagaaactcataaaatcttgtagccaaactctctttcaaagcaggggaaacagggatttctccaatcatggtctc |
52325510 |
T |
|
| Q |
371 |
caacaccgcctccgaaagcggcttgttgttta |
402 |
Q |
| |
|
|||||| || |||||||||||||||||||||| |
|
|
| T |
52325509 |
caacactgcttccgaaagcggcttgttgttta |
52325478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 275 - 402
Target Start/End: Complemental strand, 52330033 - 52329906
Alignment:
| Q |
275 |
aatgttgaagttgtcaatcttcataaactcataaaatcttgtagccaaactctctttcaaagcaggggaaacaggaatttctccaatcattgtctccaac |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
52330033 |
aatgttgaagttgtcaatcttcataaactcataaaatcttgtagccaaactctctttcaaagcaggggaaacaggaatttctccaatcatggtctccaac |
52329934 |
T |
|
| Q |
375 |
accgcctccgaaagcggcttgttgttta |
402 |
Q |
| |
|
|| ||||| ||||| ||||||||||||| |
|
|
| T |
52329933 |
actgcctctgaaagtggcttgttgttta |
52329906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 52327755 - 52327659
Alignment:
| Q |
8 |
tattccataatccgttgtgaggccaaaaatgactacgcatttttcgttactgaagtattttgtgacagaatttatgagcgttagtgactaaatacta |
104 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
52327755 |
tattccataacccgttgtgaggccaaaaatgactacggatttttcgttactgaagtattttgtaacagaatttatgagcgttagtgactaaatacta |
52327659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 276 - 370
Target Start/End: Complemental strand, 52322402 - 52322308
Alignment:
| Q |
276 |
atgttgaagttgtcaatcttcataaactcataaaatcttgtagccaaactctctttcaaagcaggggaaacaggaatttctccaatcattgtctc |
370 |
Q |
| |
|
|||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
52322402 |
atgttgaaattgttaatcttcataagatcataaaatcttgtagccaaactctctttcaaagcaggggaaacagaaatttctccaatcatagtctc |
52322308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 118 - 214
Target Start/End: Complemental strand, 52324462 - 52324366
Alignment:
| Q |
118 |
aagaaatacctgcaccaccgagaaaataggacttggtggacgacggaggtgtcaccactgccggaaattcaatgaactccaccttcactccggtgat |
214 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| ||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
52324462 |
aagaaatacctgcaccaccgaggaaataggacttgggggaggcaggaggtgtcaccactgccggaaattcaatattctccaccttcactccggtgat |
52324366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 275 - 348
Target Start/End: Complemental strand, 9179609 - 9179536
Alignment:
| Q |
275 |
aatgttgaagttgtcaatcttcataaactcataaaatcttgtagccaaactctctttcaaagcaggggaaacag |
348 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9179609 |
aatgttgaagttgtcaatcttcataaactcacaaaatcttgtagccaaactctctttcaaagcaggggaaacag |
9179536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University