View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3056-Insertion-27 (Length: 368)
Name: NF3056-Insertion-27
Description: NF3056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3056-Insertion-27 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 8 - 367
Target Start/End: Original strand, 6699984 - 6700327
Alignment:
| Q |
8 |
gaaggattacaattatgcacctaatttgcattgataaatatcagttatccaaatattatgacagaaaataaactgtaagcaatatgtacatgtggtataa |
107 |
Q |
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||||| || |||||||||||||||||||||||||||||||||||| |||| |||||||| |||||| ||||| ||||||||||||||||||||||||||| |
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| T |
6699984 |
gaaggcttgcaattatgcacctaatttgcattgataaatatcagtcatcccaatattataacagaatataaagtgtaagcaatatgtacatgtggtataa |
6700083 |
T |
|
| Q |
108 |
cttacctctcttttgaaggaattaaattcaacttgctccattcaaagagatataatgtgtacaaaaatcttatttatgaatggaagtggattgggattat |
207 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||| ||||||| |
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| T |
6700084 |
cttacctctcttttgaaggaattaacttcaacttgctccattcaaagagatataatgtg-acaaacatcttatttatgaatgaaagtggatttggattat |
6700182 |
T |
|
| Q |
208 |
ataaaagctatatatgaaacttgcacttgagatcgtgctcactgatatgactttaaagtgttgtattctatgtaattcttatttagagttggtgttaatt |
307 |
Q |
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||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||| |
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| T |
6700183 |
ataaaagctatatatgaaacttgcact---------------tgatatgactttatagtggtgtattctatgtaattcttatttagagttgatgttaatt |
6700267 |
T |
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| Q |
308 |
gccttaaaaatcattgtatctttggttttcatcctccttagagcataccttatgcttctt |
367 |
Q |
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| T |
6700268 |
gccttaaaaatcattgtatctttggttttcatcctccttagagcataccttatgcttctt |
6700327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 158; Significance: 5e-84; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 8 - 367
Target Start/End: Original strand, 25533855 - 25534214
Alignment:
| Q |
8 |
gaaggattacaattatgcacctaatttgcattgataaatatcagttatccaaatattatgacagaaaataaactgtaagcaatatgtacatgtggtataa |
107 |
Q |
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| T |
25533855 |
gaaggattgcaattatgggcttaatttgcattggtaaatatcagtcatcccaatattatgacagaagatagagggtaagcattctgaacacgtggtataa |
25533954 |
T |
|
| Q |
108 |
cttacctctcttttgaaggaattaaattcaacttgctccattcaaaga-gatataatgtgtacaaaaatcttatttatgaatggaagtggattgggatta |
206 |
Q |
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| T |
25533955 |
tttacctctctttggaaggaattaacttcaacttgctccattcaaagaggatataatgtg----------ttatttatgaatggaagtggattgggatta |
25534044 |
T |
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| Q |
207 |
tataaaagctatatatgaaacttgcacttgagatcgtgctcactgatatgactttaaagtg-------ttgtattctatgtaattcttatttaga--gtt |
297 |
Q |
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| T |
25534045 |
tataaaagttgtatatgaaacttgcacttgagatagtgcccactgatatgactttaaagtggtgtgcagtgtactctatgtaattcttatttggactctt |
25534144 |
T |
|
| Q |
298 |
ggtgttaattgccttaaaaatcattgtatctttggttttcatcctccttagagcataccttatgcttctt |
367 |
Q |
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|| ||| ||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
25534145 |
ggccttagctgccttagaaatctttgtatctttggttttcaacctccttagagcataccttatgcttctt |
25534214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 8 - 200
Target Start/End: Complemental strand, 20913963 - 20913771
Alignment:
| Q |
8 |
gaaggattacaattatgcacctaatttgcattgataaatatcagttatccaaatattatgacagaaaataaactgtaagcaatatgtacatgtggtataa |
107 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||| ||||| |||||||||||||||||||| ||| || |
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| T |
20913963 |
gaaggattacaattatgcacctaatttgcattgataaatatcagtcatcccaatatgatgacagaagataaagtgtaagcaatatgtacatgtcgtaaaa |
20913864 |
T |
|
| Q |
108 |
cttacctctcttttgaaggaattaaattcaacttgctccattcaaagagatataatgtgtacaaaaatcttatttatgaatggaagtggattg |
200 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
20913863 |
cttacctctcttttgaaggaattaacttcaacttgctccattcaaagagatataatgtgtacaaaaaccttatttatgaatggaagtggattg |
20913771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 234 - 367
Target Start/End: Complemental strand, 20913773 - 20913640
Alignment:
| Q |
234 |
ttgagatcgtgctcactgatatgactttaaagtgttgtattctatgtaattcttatttagagttggtgttaattgccttaaaaatcattgtatctttggt |
333 |
Q |
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||||||| |||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
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| T |
20913773 |
ttgagatagtgctcactgatatgactttaaagtggtgtactctatataattcttatttagagttgatgttaattgccttaaaaatcattgcatctttggt |
20913674 |
T |
|
| Q |
334 |
tttcatcctccttagagcataccttatgcttctt |
367 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
20913673 |
tttcatcctccttagagcataccttatgcttctt |
20913640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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