View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3056-Insertion-29 (Length: 357)

Name: NF3056-Insertion-29
Description: NF3056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3056-Insertion-29
NF3056-Insertion-29
[»] scaffold0240 (6 HSPs)
scaffold0240 (175-321)||(1579-1725)
scaffold0240 (8-92)||(1340-1424)
scaffold0240 (8-92)||(14619-14703)
scaffold0240 (193-343)||(15987-16135)
scaffold0240 (227-343)||(14820-14936)
scaffold0240 (197-251)||(14389-14443)
[»] scaffold0330 (3 HSPs)
scaffold0330 (175-321)||(17561-17707)
scaffold0330 (8-92)||(17322-17406)
scaffold0330 (32-83)||(3874-3925)
[»] chr4 (25 HSPs)
chr4 (175-343)||(7634002-7634170)
chr4 (177-330)||(40206072-40206225)
chr4 (187-343)||(13991378-13991534)
chr4 (175-336)||(38887996-38888157)
chr4 (200-294)||(9260520-9260613)
chr4 (198-292)||(13990728-13990821)
chr4 (197-308)||(10494847-10494958)
chr4 (198-341)||(19935431-19935575)
chr4 (228-332)||(7724087-7724189)
chr4 (228-333)||(18657051-18657157)
chr4 (228-309)||(18689554-18689636)
chr4 (254-340)||(7723665-7723751)
chr4 (198-309)||(21433596-21433707)
chr4 (228-292)||(53477265-53477329)
chr4 (254-319)||(6659354-6659419)
chr4 (237-330)||(24667640-24667733)
chr4 (228-335)||(17254890-17254998)
chr4 (260-343)||(50515894-50515978)
chr4 (228-326)||(22486792-22486889)
chr4 (254-343)||(54700596-54700686)
chr4 (198-309)||(3765240-3765351)
chr4 (228-309)||(15848379-15848460)
chr4 (278-319)||(55139122-55139163)
chr4 (278-341)||(22486712-22486776)
chr4 (228-264)||(50519224-50519260)
[»] scaffold0024 (2 HSPs)
scaffold0024 (175-341)||(145655-145822)
scaffold0024 (198-341)||(143921-144061)
[»] chr7 (32 HSPs)
chr7 (195-341)||(5934546-5934692)
chr7 (175-343)||(8916376-8916544)
chr7 (175-337)||(11000831-11000993)
chr7 (187-309)||(24840077-24840199)
chr7 (198-341)||(1369750-1369893)
chr7 (186-343)||(27142599-27142756)
chr7 (188-321)||(1365606-1365739)
chr7 (202-341)||(6451751-6451890)
chr7 (198-331)||(30217758-30217891)
chr7 (198-303)||(3778748-3778858)
chr7 (187-319)||(1786617-1786749)
chr7 (187-326)||(11228915-11229054)
chr7 (198-309)||(1690166-1690275)
chr7 (198-309)||(2767875-2767985)
chr7 (198-330)||(4888698-4888830)
chr7 (198-309)||(35814816-35814926)
chr7 (254-319)||(27309638-27309704)
chr7 (254-319)||(859180-859245)
chr7 (254-319)||(1217184-1217249)
chr7 (228-296)||(11228694-11228763)
chr7 (254-319)||(13882710-13882775)
chr7 (228-335)||(4133281-4133389)
chr7 (231-330)||(7803043-7803143)
chr7 (210-309)||(1874497-1874594)
chr7 (257-319)||(13886183-13886245)
chr7 (258-309)||(1753631-1753683)
chr7 (254-309)||(1883489-1883545)
chr7 (175-304)||(8063842-8063963)
chr7 (254-309)||(1220474-1220529)
chr7 (203-285)||(18790231-18790311)
chr7 (243-320)||(13466720-13466798)
chr7 (257-286)||(13886245-13886274)
[»] chr2 (32 HSPs)
chr2 (187-343)||(32163770-32163927)
chr2 (198-337)||(23457591-23457730)
chr2 (177-318)||(32161993-32162135)
chr2 (198-343)||(36647237-36647383)
chr2 (198-296)||(4184873-4184971)
chr2 (175-341)||(5171586-5171752)
chr2 (198-341)||(12966421-12966564)
chr2 (201-330)||(33051566-33051695)
chr2 (198-341)||(8294525-8294666)
chr2 (259-343)||(28737911-28737995)
chr2 (198-288)||(36648910-36649001)
chr2 (175-330)||(1518112-1518269)
chr2 (175-309)||(21772296-21772430)
chr2 (197-326)||(28737781-28737910)
chr2 (237-330)||(15129373-15129466)
chr2 (228-312)||(23456549-23456634)
chr2 (254-319)||(27952342-27952407)
chr2 (185-309)||(33053349-33053473)
chr2 (254-319)||(33655628-33655693)
chr2 (226-289)||(12123950-12124013)
chr2 (198-319)||(18945905-18946026)
chr2 (198-287)||(36615153-36615243)
chr2 (254-319)||(22011436-22011501)
chr2 (257-319)||(2155970-2156032)
chr2 (254-319)||(27956178-27956243)
chr2 (197-284)||(31634020-31634105)
chr2 (254-319)||(31636337-31636402)
chr2 (257-309)||(31634107-31634159)
chr2 (177-275)||(25458163-25458261)
chr2 (177-309)||(1218320-1218452)
chr2 (259-316)||(2165899-2165956)
chr2 (197-284)||(31636253-31636338)
[»] chr3 (16 HSPs)
chr3 (198-329)||(2472702-2472833)
chr3 (201-342)||(2107855-2107994)
chr3 (231-319)||(45168343-45168434)
chr3 (254-319)||(43303984-43304049)
chr3 (187-330)||(8536381-8536528)
chr3 (254-309)||(5128909-5128964)
chr3 (254-319)||(3063761-3063826)
chr3 (254-319)||(43306696-43306761)
chr3 (254-340)||(33175835-33175922)
chr3 (198-268)||(1320124-1320193)
chr3 (237-330)||(365605-365698)
chr3 (256-337)||(35908491-35908572)
chr3 (228-319)||(5324655-5324744)
chr3 (198-281)||(41152494-41152577)
chr3 (254-319)||(3068899-3068964)
chr3 (254-330)||(52708844-52708921)
[»] chr6 (27 HSPs)
chr6 (187-309)||(11658865-11658987)
chr6 (198-307)||(12882067-12882177)
chr6 (198-330)||(27822130-27822263)
chr6 (195-341)||(1127196-1127345)
chr6 (22-83)||(34390006-34390067)
chr6 (210-308)||(33615538-33615636)
chr6 (177-319)||(32361292-32361433)
chr6 (203-326)||(22873762-22873887)
chr6 (228-332)||(8048976-8049080)
chr6 (254-309)||(29340840-29340895)
chr6 (254-319)||(3536034-3536099)
chr6 (228-332)||(22910776-22910881)
chr6 (237-330)||(18727089-18727184)
chr6 (254-319)||(3542245-3542310)
chr6 (227-288)||(12778454-12778515)
chr6 (228-332)||(22889234-22889339)
chr6 (237-296)||(14238419-14238478)
chr6 (258-309)||(30052207-30052258)
chr6 (258-319)||(30049920-30049981)
chr6 (228-296)||(33215210-33215278)
chr6 (8-92)||(34490142-34490226)
chr6 (204-264)||(34373865-34373924)
chr6 (198-284)||(24443130-24443215)
chr6 (261-340)||(18718201-18718279)
chr6 (195-288)||(24664206-24664298)
chr6 (198-284)||(3535951-3536035)
chr6 (198-284)||(3542162-3542246)
[»] chr1 (27 HSPs)
chr1 (175-340)||(10925662-10925824)
chr1 (198-329)||(12944061-12944192)
chr1 (198-330)||(31915494-31915626)
chr1 (175-330)||(9030939-9031094)
chr1 (198-342)||(50713658-50713802)
chr1 (228-339)||(8221462-8221574)
chr1 (198-343)||(28660745-28660891)
chr1 (198-342)||(10927139-10927281)
chr1 (198-341)||(9194944-9195086)
chr1 (203-341)||(10928239-10928377)
chr1 (236-331)||(31913359-31913454)
chr1 (198-326)||(43681404-43681535)
chr1 (254-319)||(8931220-8931285)
chr1 (253-336)||(28661074-28661158)
chr1 (175-341)||(239609-239775)
chr1 (227-305)||(33152756-33152835)
chr1 (175-309)||(21903674-21903807)
chr1 (259-341)||(26981516-26981598)
chr1 (257-309)||(13444022-13444074)
chr1 (197-341)||(8967804-8967949)
chr1 (260-338)||(28659569-28659650)
chr1 (210-330)||(40058114-40058236)
chr1 (254-319)||(50857468-50857533)
chr1 (198-330)||(23987517-23987653)
chr1 (215-320)||(36694176-36694281)
chr1 (215-320)||(36710277-36710382)
chr1 (228-284)||(8965834-8965890)
[»] chr8 (31 HSPs)
chr8 (198-329)||(26374845-26374975)
chr8 (198-343)||(2189720-2189865)
chr8 (187-337)||(14130099-14130249)
chr8 (228-341)||(20693773-20693887)
chr8 (198-342)||(24730977-24731122)
chr8 (197-342)||(2687686-2687831)
chr8 (228-328)||(24731201-24731302)
chr8 (256-343)||(42890394-42890481)
chr8 (189-319)||(16598184-16598315)
chr8 (231-319)||(18468626-18468714)
chr8 (198-290)||(24577581-24577672)
chr8 (198-309)||(24578810-24578921)
chr8 (254-321)||(42891686-42891753)
chr8 (198-287)||(2188397-2188487)
chr8 (198-295)||(2609543-2609639)
chr8 (254-309)||(22926682-22926737)
chr8 (254-319)||(22512070-22512135)
chr8 (254-319)||(22519370-22519435)
chr8 (254-319)||(22921874-22921939)
chr8 (254-319)||(23570584-23570649)
chr8 (175-339)||(31072124-31072294)
chr8 (228-296)||(2689121-2689188)
chr8 (254-319)||(6845336-6845401)
chr8 (187-259)||(30440671-30440742)
chr8 (198-273)||(10629188-10629262)
chr8 (254-309)||(23573583-23573638)
chr8 (254-309)||(37189866-37189921)
chr8 (198-271)||(16598111-16598183)
chr8 (254-319)||(22520823-22520888)
chr8 (199-296)||(25479452-25479548)
chr8 (198-250)||(26377976-26378027)
[»] chr5 (9 HSPs)
chr5 (198-321)||(492511-492635)
chr5 (202-330)||(22440806-22440934)
chr5 (201-341)||(18252364-18252504)
chr5 (210-291)||(19497356-19497437)
chr5 (210-341)||(26140300-26140431)
chr5 (239-341)||(8456380-8456483)
chr5 (254-308)||(21849000-21849054)
chr5 (254-309)||(40778820-40778875)
chr5 (254-319)||(9868428-9868494)
[»] scaffold0054 (3 HSPs)
scaffold0054 (175-333)||(49244-49401)
scaffold0054 (176-329)||(37635-37786)
scaffold0054 (228-332)||(10629-10734)
[»] scaffold0251 (1 HSPs)
scaffold0251 (193-331)||(9642-9781)
[»] scaffold0090 (1 HSPs)
scaffold0090 (199-309)||(15098-15207)
[»] scaffold0184 (1 HSPs)
scaffold0184 (230-291)||(14177-14238)
[»] scaffold0078 (1 HSPs)
scaffold0078 (230-291)||(58606-58667)
[»] scaffold0531 (1 HSPs)
scaffold0531 (259-332)||(11599-11672)
[»] scaffold0110 (2 HSPs)
scaffold0110 (197-318)||(46758-46877)
scaffold0110 (254-291)||(45314-45351)
[»] scaffold0236 (1 HSPs)
scaffold0236 (258-309)||(16402-16453)


Alignment Details
Target: scaffold0240 (Bit Score: 107; Significance: 1e-53; HSPs: 6)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 175 - 321
Target Start/End: Original strand, 1579 - 1725
Alignment:
Q  175 acagttgtaatttaagaggaaatttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttg 274  Q
    ||||||||||  |||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||| |||||| |||||||||    
T  1579 acagttgtaacctaagaggaaacttttattcattgaataatattttagatagtttttctcaaattctggtggattccagaaccatattttgacaagtttg 1678  T
Q  275 tcgcttgcaaacttgtttctttcaatctaggtttaacacttgctagc 321  Q
    ||| ||||||||||||||||||||||||||||||||| |||||||||    
T  1679 tcgtttgcaaacttgtttctttcaatctaggtttaacgcttgctagc 1725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 8 - 92
Target Start/End: Original strand, 1340 - 1424
Alignment:
Q  8 aatgcgtcatattggataccttcataaaatactttcatcattttaccaaacaaagaacatattcaataatgaatttcattattct 92  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  1340 aatgcgtcatattggataccttcataaaatagtttcatcattttaccaaacaaagaacatattcaataatgaattttattattct 1424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 8 - 92
Target Start/End: Complemental strand, 14703 - 14619
Alignment:
Q  8 aatgcgtcatattggataccttcataaaatactttcatcattttaccaaacaaagaacatattcaataatgaatttcattattct 92  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  14703 aatgcgtcagattggatacgttcataaaatactttcatcattttaccaaacaaagaacatattcaacaatgaattttattattct 14619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 193 - 343
Target Start/End: Original strand, 15987 - 16135
Alignment:
Q  193 gaaatttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgttt 292  Q
    |||| ||||||||||| |||||||||||| | | |||| || |||||||||||||||| | ||  ||||||||| | ||||||| ||||||||||||||     
T  15987 gaaacttttattcattcaataatattttatagagtttt-ctaaatttctggtggattctataatactattttcagatgtttgtcacttgcaaacttgttc 16085  T
Q  293 ctttcaatctaggtttaacacttgctagcttacgcttctgactgcgtcagt 343  Q
     |||| ||||||||||| |||||| |||| |||| ||| ||||||||||||    
T  16086 ttttctatctaggtttagcacttgttagcctacg-ttccgactgcgtcagt 16135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 227 - 343
Target Start/End: Original strand, 14820 - 14936
Alignment:
Q  227 tttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgtttctttcaatctaggtttaacacttgctagcttacg 326  Q
    ||||| ||||||| |||||||||||  |  ||||||||||||||||| |||||||| ||||| ||| |||||||| ||||||| | ||||||||| ||||    
T  14820 tttttttcaatttttggtggattccggattcctattttcacaagtttttcgcttgccaacttatttatttcaatcaaggtttagcgcttgctagcctacg 14919  T
Q  327 cttctgactgcgtcagt 343  Q
    ||||| | |||||||||    
T  14920 cttctaattgcgtcagt 14936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 14443 - 14389
Alignment:
Q  197 tttttattcattgaataatattttagataatttttctcaatttctggtggattcc 251  Q
    |||||||| |||||||||||||||||| | ||||||||||||| |||||||||||    
T  14443 tttttatttattgaataatattttagaaagtttttctcaatttttggtggattcc 14389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 103; Significance: 3e-51; HSPs: 3)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 175 - 321
Target Start/End: Original strand, 17561 - 17707
Alignment:
Q  175 acagttgtaatttaagaggaaatttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttg 274  Q
    ||||||||||  |||||||||| |||||||||||||||||||||||||||| |||||||||| ||| ||||||||||| |||| |||||| |||||||||    
T  17561 acagttgtaacctaagaggaaaattttattcattgaataatattttagatagtttttctcaaattcaggtggattccagaaccatattttgacaagtttg 17660  T
Q  275 tcgcttgcaaacttgtttctttcaatctaggtttaacacttgctagc 321  Q
    ||| ||||||||||||||||||||||||||||||||| |||||||||    
T  17661 tcgtttgcaaacttgtttctttcaatctaggtttaacgcttgctagc 17707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 8 - 92
Target Start/End: Original strand, 17322 - 17406
Alignment:
Q  8 aatgcgtcatattggataccttcataaaatactttcatcattttaccaaacaaagaacatattcaataatgaatttcattattct 92  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  17322 aatgcgtcatattggataccttcataaaatagtttcatcattttaccaaacaaagaacatattcaataatgaattttattattct 17406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 3874 - 3925
Alignment:
Q  32 taaaatactttcatcattttaccaaacaaagaacatattcaataatgaattt 83  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  3874 taaaatactttcatcattttaacaaacaaagaacatattcaataatgaattt 3925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 8e-46; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 175 - 343
Target Start/End: Original strand, 7634002 - 7634170
Alignment:
Q  175 acagttgtaatttaagaggaaatttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttg 274  Q
    ||||||||||  |||||||||| ||||||||||| |||||||||||||| | |||| ||||||||||||||||||||| ||| |||||| |||||||||     
T  7634002 acagttgtaacataagaggaaacttttattcattcaataatattttagagagtttt-ctcaatttctggtggattccagaactctatttccacaagttta 7634100  T
Q  275 tcgcttgcaaacttgtttc-tttcaatctaggtttaacacttgctagcttacgcttctgactgcgtcagt 343  Q
    ||| ||||||||||||| | |||||||||||||||||| ||| ||||| |||||||||||||||||||||    
T  7634101 tcgtttgcaaacttgttccttttcaatctaggtttaacgcttactagcatacgcttctgactgcgtcagt 7634170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 177 - 330
Target Start/End: Original strand, 40206072 - 40206225
Alignment:
Q  177 agttgtaatttaagaggaaatttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttgtc 276  Q
    ||||||| | ||||||  |||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||| |||| |||||||||||||||||||    
T  40206072 agttgtagtctaagagataatttttattcattcaataatattttagagaatttttctcaatttctggtgaattccgaaacactattttcacaagtttgtc 40206171  T
Q  277 gcttgcaaacttgtttctttcaatctaggtttaacacttgctagcttacgcttc 330  Q
    |||||| ||||||| ||||||||| ||| |||| | ||||||||| ||||||||    
T  40206172 gcttgcgaacttgtctctttcaatttagatttagcgcttgctagcctacgcttc 40206225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 187 - 343
Target Start/End: Complemental strand, 13991534 - 13991378
Alignment:
Q  187 taagaggaaatttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaac 286  Q
    ||||||| || ||||||||||| |||||||||||||| | |||| ||||| ||||||||||||||| |||| ||||||| || |||||||||||||||||    
T  13991534 taagagggaacttttattcattcaataatattttagagagtttt-ctcaaattctggtggattccagaaccttattttcgcatgtttgtcgcttgcaaac 13991436  T
Q  287 ttgtttc-tttcaatctaggtttaacacttgctagcttacgcttctgactgcgtcagt 343  Q
    ||||||| ||||||||||| |||| | ||||||||| |||||||| ||||||||||||    
T  13991435 ttgtttcttttcaatctagatttagcgcttgctagcctacgcttccgactgcgtcagt 13991378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 175 - 336
Target Start/End: Complemental strand, 38888157 - 38887996
Alignment:
Q  175 acagttgtaatttaagaggaaatttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttg 274  Q
    ||||||||| ||||||||  || ||||||||||| ||  |||||||||| |||||| ||||||||||  |||||||| ||||||||||||||||||||||    
T  38888157 acagttgtactttaagagtcaacttttattcattcaaccatattttagagaatttt-ctcaatttctaatggattccgaaaccctattttcacaagtttg 38888059  T
Q  275 tcgcttgcaaacttgttt-ctttcaatctaggtttaacacttgctagcttacgcttctgactg 336  Q
    ||||||||||| ||||||  ||||||||||||||||||  ||| |||| || |||| ||||||    
T  38888058 tcgcttgcaaatttgtttattttcaatctaggtttaacgtttgttagcatatgcttatgactg 38887996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 200 - 294
Target Start/End: Original strand, 9260520 - 9260613
Alignment:
Q  200 ttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgtttct 294  Q
    ||||||||| ||| |||||||||||| |||| |||||||||||||||||||  ||||||||||||| ||||||||||| ||||||||||||||||    
T  9260520 ttattcattcaattatattttagatagtttt-ctcaatttctggtggattctgaaaccctattttcgcaagtttgtcgtttgcaaacttgtttct 9260613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 198 - 292
Target Start/End: Complemental strand, 13990821 - 13990728
Alignment:
Q  198 ttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgttt 292  Q
    ||||||||||| |||||||||||||| | ||||| |||||||||| ||||||||| ||||||||||||||||||||||  |||||||||||||||    
T  13990821 ttttattcattcaataatattttagagagttttt-tcaatttctgatggattccagaaccctattttcacaagtttgttacttgcaaacttgttt 13990728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 197 - 308
Target Start/End: Original strand, 10494847 - 10494958
Alignment:
Q  197 tttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgtttc-tt 295  Q
    |||||||||||| |||||||||||||| | |||| |||||||||||||| |||||  ||| ||||||||||| ||||||| |||||||||||||||| ||    
T  10494847 tttttattcattcaataatattttagagagtttt-ctcaatttctggtgaattccggaactctattttcacaggtttgtcacttgcaaacttgtttcttt 10494945  T
Q  296 tcaatctaggttt 308  Q
    || ||||||||||    
T  10494946 tccatctaggttt 10494958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 198 - 341
Target Start/End: Original strand, 19935431 - 19935575
Alignment:
Q  198 ttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgtttctttc 297  Q
    ||||||||| | |||  ||||||||| ||||||||||||||| || || |||||| ||||||||||||| |||||||||||||||||| || ||| ||||    
T  19935431 ttttattcaatcaatgttattttagagaatttttctcaatttttgatgaattccataaccctattttcataagtttgtcgcttgcaaatttatttttttc 19935530  T
Q  298 aatctaggtttaacacttgctagcttacgcttctg-actgcgtca 341  Q
     ||||  ||||| | || |||||| |||||||||| |||||||||    
T  19935531 tatctgagtttagcgctggctagcctacgcttctgtactgcgtca 19935575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 228 - 332
Target Start/End: Complemental strand, 7724189 - 7724087
Alignment:
Q  228 ttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgtttc-tttcaatctaggtttaacacttgctagcttacg 326  Q
    ||||||||||||||||||||||||  ||||||||||||   ||||||||||| ||||||||| ||| ||||||| |||||||| ||||||||||| ||||    
T  7724189 ttttctcaatttctggtggattccggaaccctattttc---agtttgtcgctcgcaaacttgcttcttttcaatataggtttagcacttgctagcatacg 7724093  T
Q  327 cttctg 332  Q
     |||||    
T  7724092 tttctg 7724087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 228 - 333
Target Start/End: Complemental strand, 18657157 - 18657051
Alignment:
Q  228 ttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgtttc-tttcaatctaggtttaacacttgctagcttacg 326  Q
    ||||||||||||| |||||||||  ||| |||||||| ||||||||||||| ||||||||| |||| ||||||||||||||||   ||  ||||||||||    
T  18657157 ttttctcaatttccggtggattctgaaatcctatttttacaagtttgtcgcatgcaaacttttttcttttcaatctaggtttagtgctctctagcttacg 18657058  T
Q  327 cttctga 333  Q
    |||||||    
T  18657057 cttctga 18657051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 228 - 309
Target Start/End: Complemental strand, 18689636 - 18689554
Alignment:
Q  228 ttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgtttc-tttcaatctaggttta 309  Q
    |||||||||||||||||||||||   ||||||||||| ||||||||||||| ||||||||| |||| ||||||||||||||||    
T  18689636 ttttctcaatttctggtggattctgcaaccctatttttacaagtttgtcgcatgcaaacttttttcttttcaatctaggttta 18689554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 254 - 340
Target Start/End: Complemental strand, 7723751 - 7723665
Alignment:
Q  254 aaccctattttcacaagtttgtcgcttgcaaacttgtttctttcaatctaggtttaacacttgctagcttacgcttctg-actgcgtc 340  Q
    |||||||||||||||||||||| |||||||||||||||  |||||||||| ||||| | ||||||||| |||||||||| ||||||||    
T  7723751 aaccctattttcacaagtttgtagcttgcaaacttgttcttttcaatcta-gtttagcgcttgctagcctacgcttctgtactgcgtc 7723665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 198 - 309
Target Start/End: Complemental strand, 21433707 - 21433596
Alignment:
Q  198 ttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgtt-tcttt 296  Q
    ||||||||||| |||||||||||||| |||||| |||||||| || || ||||   ||||||||||||| ||||||||||||||| || ||||| | |||    
T  21433707 ttttattcattcaataatattttagagaatttt-ctcaatttatgatgaattctggaaccctattttcataagtttgtcgcttgcgaatttgttcttttt 21433609  T
Q  297 caatctaggttta 309  Q
    | |||||||||||    
T  21433608 ctatctaggttta 21433596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 228 - 292
Target Start/End: Complemental strand, 53477329 - 53477265
Alignment:
Q  228 ttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgttt 292  Q
    ||||||||||||||||||||||| ||||||| ||||||||| ||||| |||||| ||||||||||    
T  53477329 ttttctcaatttctggtggattctaaaaccccattttcacaggtttgacgcttgtaaacttgttt 53477265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 254 - 319
Target Start/End: Complemental strand, 6659419 - 6659354
Alignment:
Q  254 aaccctattttcacaagtttgtcgcttgcaaacttgtttctttcaatctaggtttaacacttgcta 319  Q
    ||||||||||||||||||||||||||||||||||||||  |||| |||||| |||| | |||||||    
T  6659419 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttctatctagatttagcgcttgcta 6659354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 237 - 330
Target Start/End: Original strand, 24667640 - 24667733
Alignment:
Q  237 tttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgtttctttcaatctaggtttaacacttgctagcttacgcttc 330  Q
    ||||| |||||||||  |||||||||||||||||||||| || ||| | ||| ||  |||| ||||||||||||| ||||||||| ||||||||    
T  24667640 tttctagtggattccggaaccctattttcacaagtttgttgcctgcgagcttcttcttttctatctaggtttaacgcttgctagcctacgcttc 24667733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 228 - 335
Target Start/End: Complemental strand, 17254998 - 17254890
Alignment:
Q  228 ttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgtttct-ttcaatctaggtttaacacttgctagcttacg 326  Q
    |||||||||||||| | ||||| || ||| |||||||||||||||||||||||| ||| |||||  | ||||||||| ||||| |  |||||||| ||||    
T  17254998 ttttctcaatttctaggggatttcagaactctattttcacaagtttgtcgcttgaaaatttgttcatcttcaatctaagtttagcgtttgctagcctacg 17254899  T
Q  327 cttctgact 335  Q
    |||| ||||    
T  17254898 cttccgact 17254890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 260 - 343
Target Start/End: Complemental strand, 50515978 - 50515894
Alignment:
Q  260 attttcacaagtttgtcgcttgcaaacttgtttctt-tcaatctaggtttaacacttgctagcttacgcttctgactgcgtcagt 343  Q
    |||||||||||||||||||||||||||||||||||| ||| |||| || || | ||||||||| | |||||| |||| |||||||    
T  50515978 attttcacaagtttgtcgcttgcaaacttgtttcttctcagtctaagtgtagcgcttgctagcctccgcttccgactacgtcagt 50515894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 326
Target Start/End: Complemental strand, 22486889 - 22486792
Alignment:
Q  228 ttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaactt-gtttctttcaatctaggtttaacacttgctagcttacg 326  Q
    ||||||||||||||||||||||||  || |||||||||||||| ||||||||||||||||| || | |||| || |||||||| | ||||||||| ||||    
T  22486889 ttttctcaatttctggtggattccggaa-cctattttcacaag-ttgtcgcttgcaaacttggtctttttctatataggtttagcgcttgctagcctacg 22486792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 254 - 343
Target Start/End: Complemental strand, 54700686 - 54700596
Alignment:
Q  254 aaccctattttcacaagtttgtcgcttgcaaacttgtttc-tttcaatctaggtttaacacttgctagcttacgcttctgactgcgtcagt 343  Q
    ||||||||| ||||||||||||| |||||||||||||||| ||||||| |||||||| |  |||||||| ||| ||   ||||||||||||    
T  54700686 aaccctattctcacaagtttgtcacttgcaaacttgtttcttttcaatataggtttagcgtttgctagcctacactctcgactgcgtcagt 54700596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 198 - 309
Target Start/End: Complemental strand, 3765351 - 3765240
Alignment:
Q  198 ttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgtttc-ttt 296  Q
    ||||||| ||| ||||||||||| || | |||| |||||||| ||||| ||||||||| |||| ||| |||||| ||||||||  ||| ||||||| |||    
T  3765351 ttttatttattcaataatatttttgagagtttt-ctcaatttttggtgaattccaaaatcctacttttacaagtctgtcgcttataaaattgtttctttt 3765253  T
Q  297 caatctaggttta 309  Q
    |||| ||||||||    
T  3765252 caatataggttta 3765240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 309
Target Start/End: Original strand, 15848379 - 15848460
Alignment:
Q  228 ttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgtttc-tttcaatctaggttta 309  Q
    |||||||||||| ||||||||| |  ||| || ||||||||| |||||| ||||| |||||||||| ||||||||||| ||||    
T  15848379 ttttctcaatttttggtggatttcggaactctcttttcacaattttgtcacttgc-aacttgtttcttttcaatctagattta 15848460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 319
Target Start/End: Complemental strand, 55139163 - 55139122
Alignment:
Q  278 cttgcaaacttgtttctttcaatctaggtttaacacttgcta 319  Q
    |||||||| |||||| |||||||||||||||||| |||||||    
T  55139163 cttgcaaatttgtttatttcaatctaggtttaacgcttgcta 55139122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 341
Target Start/End: Complemental strand, 22486776 - 22486712
Alignment:
Q  278 cttgcaaacttgtt-tctttcaatctaggtttaacacttgctagcttacgcttctgactgcgtca 341  Q
    |||||||||||||| | |||| |||||||||||||  |||||| ||||||||||  |||||||||    
T  22486776 cttgcaaacttgttctttttctatctaggtttaacctttgctaacttacgcttccaactgcgtca 22486712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 264
Target Start/End: Complemental strand, 50519260 - 50519224
Alignment:
Q  228 ttttctcaatttctggtggattccaaaaccctatttt 264  Q
    |||||||||||||| |||||||||| |||||||||||    
T  50519260 ttttctcaatttctagtggattccagaaccctatttt 50519224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 175 - 341
Target Start/End: Original strand, 145655 - 145822
Alignment:
Q  175 acagttgtaatttaagaggaaatttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttg 274  Q
    ||||||||| | |||||||||  ||||||||||| |||||||||||||||||||||||||||||| |||||||||| | ||||||||||| ||||| |||    
T  145655 acagttgtagtctaagaggaagcttttattcattcaataatattttagataatttttctcaatttttggtggattctagaaccctatttttacaagcttg 145754  T
Q  275 tcgcttgcaaacttg-tttctttcaatctaggtttaacacttgctagcttacgcttctgactgcgtca 341  Q
    ||||||||||||||| ||| |||||||||||||||| |  |||||||||||| |||| |||| |||||    
T  145755 tcgcttgcaaacttgatttttttcaatctaggtttagcgattgctagcttacacttccgactacgtca 145822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 341
Target Start/End: Complemental strand, 144061 - 143921
Alignment:
Q  198 ttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttg-tttcttt 296  Q
    ||||||| ||| |||||||||||||| | |||| |||||||   ||||||||||  || ||||||||||||| ||| ||||||||||||||| |||  ||    
T  144061 ttttatttattcaataatattttagagagtttt-ctcaatt---ggtggattccggaaacctattttcacaaatttttcgcttgcaaacttgcttttctt 143966  T
Q  297 caatctaggtttaacacttgctagcttacgcttctgactgcgtca 341  Q
    | || ||| ||||  | |||||||| ||| |||| ||||||||||    
T  143965 ctatttagatttagaatttgctagcctacacttccgactgcgtca 143921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 88; Significance: 3e-42; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 195 - 341
Target Start/End: Original strand, 5934546 - 5934692
Alignment:
Q  195 aatttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgtttc- 293  Q
    |||||||||||||| |||||||||||||| |||||| ||||||||||  |||||||  ||| ||||||||||||||||||||||||||||| |||||||     
T  5934546 aatttttattcattcaataatattttagagaatttt-ctcaatttctaatggattctgaaatcctattttcacaagtttgtcgcttgcaaatttgtttct 5934644  T
Q  294 tttcaatctaggtttaacacttgctagcttacgcttctgactgcgtca 341  Q
    |||||||||||||||| | ||||||||| |||||||||||||||||||    
T  5934645 tttcaatctaggtttagcgcttgctagcctacgcttctgactgcgtca 5934692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 175 - 343
Target Start/End: Complemental strand, 8916544 - 8916376
Alignment:
Q  175 acagttgtaatttaagaggaaatttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttg 274  Q
    ||||||||||  |||||||||| ||||||||||| |||||||||||||| | |||| ||||||||||||||||||||| ||| |||||| |||||||||     
T  8916544 acagttgtaacataagaggaaacttttattcattcaataatattttagagagtttt-ctcaatttctggtggattccagaactctatttccacaagttta 8916446  T
Q  275 tcgcttgcaaacttgtt-tctttcaatctaggtttaacacttgctagcttacgcttctgactgcgtcagt 343  Q
    ||| |||||||||||||   ||| |||||||||||||| ||| ||||| |||||||||||||||||||||    
T  8916445 tcgtttgcaaacttgttcattttaaatctaggtttaacgcttactagcatacgcttctgactgcgtcagt 8916376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 175 - 337
Target Start/End: Complemental strand, 11000993 - 11000831
Alignment:
Q  175 acagttgtaatttaagaggaaatttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttg 274  Q
    |||||||||  |||||||| |||| ||||||||| |||||||||||||| | |||| | ||||||||||||||||||  |||||||||||||| ||||||    
T  11000993 acagttgtagcttaagaggcaattattattcattcaataatattttagagagttttcc-caatttctggtggattcctgaaccctattttcactagtttg 11000895  T
Q  275 tcgcttgcaaacttgtttc-tttcaatctaggtttaacacttgctagcttacgcttctgactgc 337  Q
    |||||||| |||||||||| |||||||||||||||| | ||||||||| ||| |||| ||||||    
T  11000894 tcgcttgcgaacttgtttcttttcaatctaggtttagcgcttgctagcctacacttccgactgc 11000831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 187 - 309
Target Start/End: Original strand, 24840077 - 24840199
Alignment:
Q  187 taagaggaaatttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaac 286  Q
    ||||||| || ||||||| |||||||||||||||||| | |||| ||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  24840077 taagaggcaacttttatttattgaataatattttagagagtttt-ctcaatttctggtggattccggaaccctattttcacaagtttgtcgcttgcaaac 24840175  T
Q  287 ttgtttc-tttcaatctaggttta 309  Q
    ||||||| ||||||||||||||||    
T  24840176 ttgtttcttttcaatctaggttta 24840199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 198 - 341
Target Start/End: Original strand, 1369750 - 1369893
Alignment:
Q  198 ttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgtttc-ttt 296  Q
    ||||||| ||| |||||||||||| | | |||| ||||||||||||||||||||  ||||||||||| |||||||| ||||||||||||||||||| |||    
T  1369750 ttttattaattcaataatattttatagagtttt-ctcaatttctggtggattccggaaccctattttaacaagtttatcgcttgcaaacttgtttctttt 1369848  T
Q  297 caatctaggtttaacacttgctagcttacgcttctgactgcgtca 341  Q
    ||||||||||||||| ||||||||| | |||||| ||||||||||    
T  1369849 caatctaggtttaacgcttgctagcctccgcttccgactgcgtca 1369893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 186 - 343
Target Start/End: Original strand, 27142599 - 27142756
Alignment:
Q  186 ttaagaggaaatttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaa 285  Q
    |||||||| || ||||||| |||||||||||||| ||| | |||| ||||||||||||||| |||   ||||||||||||||||||||||||||||||||    
T  27142599 ttaagagggaacttttattaattgaataatatttcagagagtttt-ctcaatttctggtggtttcaggaaccctattttcacaagtttgtcgcttgcaaa 27142697  T
Q  286 cttgtttc-tttcaatctaggtttaacacttgctagcttacgcttctgactgcgtcagt 343  Q
    |||||||| ||||||||||||||||||  |||||||  ||||| || |||| |||||||    
T  27142698 cttgtttcttttcaatctaggtttaaccattgctaggctacgcatccgacttcgtcagt 27142756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 188 - 321
Target Start/End: Original strand, 1365606 - 1365739
Alignment:
Q  188 aagaggaaatttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaact 287  Q
    |||||| || ||||||||||| |||||||||||||| | ||||||||||||| |||||||||    |||||||||||||||||||  |||||| ||||||    
T  1365606 aagaggcaacttttattcattcaataatattttagagagtttttctcaatttttggtggattatggaaccctattttcacaagttcatcgcttacaaact 1365705  T
Q  288 tgtttctttcaatctaggtttaacacttgctagc 321  Q
    |||| ||||||||||||||||| | |||||||||    
T  1365706 tgttcctttcaatctaggtttagcgcttgctagc 1365739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 202 - 341
Target Start/End: Complemental strand, 6451890 - 6451751
Alignment:
Q  202 attcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgttt-ctttcaat 300  Q
    ||||||| |||||||||||||| | ||||| ||||||| || |||||||| ||||| |||||||||| ||||||||||||||||||||||| ||||||||    
T  6451890 attcattcaataatattttagagagttttt-tcaatttttgttggattccgaaaccttattttcacaggtttgtcgcttgcaaacttgtttcctttcaat 6451792  T
Q  301 ctaggtttaacacttgctagcttacgcttctgactgcgtca 341  Q
    |||| |||| | |||| |||||| |||||| ||||||||||    
T  6451791 ctagatttagcgcttgatagctttcgcttccgactgcgtca 6451751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 198 - 331
Target Start/End: Original strand, 30217758 - 30217891
Alignment:
Q  198 ttttattcattgaataatattttagataatttt-tctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgtttcttt 296  Q
    ||||||||| | |||||||||||||| | | || |||||||| |||||||||| || ||| ||||||||||||||||||||||||| |||||| ||||||    
T  30217758 ttttattcaatcaataatattttagagagtgttatctcaattactggtggatttcagaactctattttcacaagtttgtcgcttgcgaacttg-ttcttt 30217856  T
Q  297 caatctaggtttaacacttgctagcttacgcttct 331  Q
    ||||||||||||| | ||||||||| |||||||||    
T  30217857 caatctaggtttagcgcttgctagcctacgcttct 30217891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 198 - 303
Target Start/End: Complemental strand, 3778858 - 3778748
Alignment:
Q  198 ttttattcattgaataatattttaga-----taatttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgttt 292  Q
    ||||||||| | ||||||||||||||     ||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||     
T  3778858 ttttattcaatcaataatattttagagagtttaatttttctcaatttctggtggattccggaaccctattttcacaagtttctcgcttgcaaacttgttc 3778759  T
Q  293 ctttcaatcta 303  Q
     ||||||||||    
T  3778758 atttcaatcta 3778748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 187 - 319
Target Start/End: Original strand, 1786617 - 1786749
Alignment:
Q  187 taagaggaaatttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaac 286  Q
    |||||||||| ||||||||||| |||||||||||||| | |||| | ||||||||| |||||||   |||||||||||| || |||||||||||||||||    
T  1786617 taagaggaaacttttattcattaaataatattttagagagtttt-cgcaatttctgatggattctggaaccctattttcgcatgtttgtcgcttgcaaac 1786715  T
Q  287 ttgtt-tctttcaatctaggtttaacacttgcta 319  Q
    ||||| | |||| ||||||||||| |||||||||    
T  1786716 ttgttatttttctatctaggtttagcacttgcta 1786749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 187 - 326
Target Start/End: Original strand, 11228915 - 11229054
Alignment:
Q  187 taagaggaaatttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaac 286  Q
    ||||||| || ||||||||| | |||||||||||||| | ||||  ||||||||||||||||||   |||||| |||||||| ||||||||| |||||||    
T  11228915 taagaggcaacttttattcactcaataatattttagagagtttta-tcaatttctggtggattctggaacccttttttcacacgtttgtcgcctgcaaac 11229013  T
Q  287 ttgtt-tctttcaatctaggtttaacacttgctagcttacg 326  Q
    ||||| | |||||||||||||||| |||||||| |||||||    
T  11229014 ttgttctttttcaatctaggtttagcacttgctggcttacg 11229054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 198 - 309
Target Start/End: Complemental strand, 1690275 - 1690166
Alignment:
Q  198 ttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgtttctttc 297  Q
    ||||||||||| |||| ||||||||| |||||| ||||||||||| ||||||||| |||||||||||||||| |||||||| |  |||||||||||||||    
T  1690275 ttttattcattaaatactattttagagaatttt-ctcaatttctgatggattccagaaccctattttcacaaatttgtcgcct-taaacttgtttctttc 1690178  T
Q  298 aatctaggttta 309  Q
    ||| ||||||||    
T  1690177 aatttaggttta 1690166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 198 - 309
Target Start/End: Original strand, 2767875 - 2767985
Alignment:
Q  198 ttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgtttctttc 297  Q
    ||||||||| | |||||||||||||| | ||||||||||||||||||||||||| |||||||| |||| ||| || ||||||||| ||||| || |||||    
T  2767875 ttttattcaattaataatattttagagagtttttctcaatttctggtggattccgaaacccta-tttctcaaattcgtcgcttgcgaacttattcctttc 2767973  T
Q  298 aatctaggttta 309  Q
    ||||||||||||    
T  2767974 aatctaggttta 2767985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 198 - 330
Target Start/End: Complemental strand, 4888830 - 4888698
Alignment:
Q  198 ttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgtttctttc 297  Q
    ||||||||| | |||||||||||||| | | ||| ||||||||||||| |||||  ||| ||||||||||| ||||||||||||||||||||||  ||||    
T  4888830 ttttattcaatcaataatattttagagagtgtttttcaatttctggtgaattccggaactctattttcacaggtttgtcgcttgcaaacttgttcttttc 4888731  T
Q  298 aatctaggtttaacacttgctagcttacgcttc 330  Q
     ||||||||| | | | ||||||| ||||||||    
T  4888730 tatctaggttcagcgcatgctagcctacgcttc 4888698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 198 - 309
Target Start/End: Original strand, 35814816 - 35814926
Alignment:
Q  198 ttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgtttctttc 297  Q
    ||||||||||| |||||||||||||| | |||| |||||||| |||| ||||| | |||| |||||| |||||||||||||||||||| ||| |||||||    
T  35814816 ttttattcattcaataatattttagagagtttt-ctcaatttatggtagattcaagaaccttatttttacaagtttgtcgcttgcaaagttggttctttc 35814914  T
Q  298 aatctaggttta 309  Q
    ||||||| ||||    
T  35814915 aatctagattta 35814926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 254 - 319
Target Start/End: Complemental strand, 27309704 - 27309638
Alignment:
Q  254 aaccctattttcacaagtttgtcgcttgcaaacttgtttc-tttcaatctaggtttaacacttgcta 319  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||    
T  27309704 aaccctattttcacaagtttgtcgcttgcaaacttgtttcttttcaatctaggtttagcgcttgcta 27309638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 254 - 319
Target Start/End: Complemental strand, 859245 - 859180
Alignment:
Q  254 aaccctattttcacaagtttgtcgcttgcaaacttgtttctttcaatctaggtttaacacttgcta 319  Q
    ||||||||||||||||||||||||||||||||||||||  |||| ||||||||||| | |||||||    
T  859245 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcttgcta 859180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 254 - 319
Target Start/End: Complemental strand, 1217249 - 1217184
Alignment:
Q  254 aaccctattttcacaagtttgtcgcttgcaaacttgtttctttcaatctaggtttaacacttgcta 319  Q
    ||||||||||||||||||||||||||||||||||||||  |||| ||||||||||| | |||||||    
T  1217249 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcttgcta 1217184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 228 - 296
Target Start/End: Original strand, 11228694 - 11228763
Alignment:
Q  228 ttttctcaattt-ctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgtttcttt 296  Q
    |||||||||||| ||||||||||| | |||||||||| |||||||||||||||| |||||||||||||||    
T  11228694 ttttctcaattttctggtggattctagaaccctatttccacaagtttgtcgcttccaaacttgtttcttt 11228763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 254 - 319
Target Start/End: Complemental strand, 13882775 - 13882710
Alignment:
Q  254 aaccctattttcacaagtttgtcgcttgcaaacttgtttctttcaatctaggtttaacacttgcta 319  Q
    ||||||||||||||||||||||||||||||||||||||  |||| ||||||||||| | |||||||    
T  13882775 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcttgcta 13882710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 228 - 335
Target Start/End: Complemental strand, 4133389 - 4133281
Alignment:
Q  228 ttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgtttct-ttcaatctaggtttaacacttgctagcttacg 326  Q
    |||||||||||||| | ||||| || ||| |||||||||||||||||||||||| ||| |||||  | ||||||||| ||||| || |||||||| ||||    
T  4133389 ttttctcaatttctaggggatttcagaactctattttcacaagtttgtcgcttgaaaatttgttcatcttcaatctaagtttagcatttgctagcctacg 4133290  T
Q  327 cttctgact 335  Q
    |||| ||||    
T  4133289 cttccgact 4133281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 231 - 330
Target Start/End: Complemental strand, 7803143 - 7803043
Alignment:
Q  231 tctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgtttc-tttcaatctaggtttaacacttgctagcttacgctt 329  Q
    |||||| || |||||||||||  |||| |||||||| |||||||| ||||||||||||||||| |||| | ||||||||||| ||||||| | |||||||    
T  7803143 tctcaaattatggtggattccggaaccttattttcataagtttgttgcttgcaaacttgtttcttttcgacctaggtttaacccttgctaacctacgctt 7803044  T
Q  330 c 330  Q
    |    
T  7803043 c 7803043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 309
Target Start/End: Original strand, 1874497 - 1874594
Alignment:
Q  210 aataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgtttc-tttcaatctaggttt 308  Q
    |||||||||||||| | |||| |||||||   |||||||||   |||| ||||||||||||||||||| ||||||||||||||| |||||||| ||||||    
T  1874497 aataatattttagagagttttcctcaatt---ggtggattcttgaaccttattttcacaagtttgtcgtttgcaaacttgtttcttttcaatcaaggttt 1874593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 257 - 319
Target Start/End: Complemental strand, 13886245 - 13886183
Alignment:
Q  257 cctattttcacaagtttgtcgcttgcaaacttgtttctttcaatctaggtttaacacttgcta 319  Q
    |||||||||||||||||||||||||||||||||||  |||| ||||||||||| | |||||||    
T  13886245 cctattttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcttgcta 13886183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 258 - 309
Target Start/End: Complemental strand, 1753683 - 1753631
Alignment:
Q  258 ctattttcacaagtttgtcgcttgcaaacttgtttc-tttcaatctaggttta 309  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  1753683 ctattttcacaagtttgtcgcttgcaaacttgtttcttttcaatttaggttta 1753631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 254 - 309
Target Start/End: Original strand, 1883489 - 1883545
Alignment:
Q  254 aaccctattttcacaagtttgtcgcttgcaaacttgtttc-tttcaatctaggttta 309  Q
    |||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  1883489 aaccttattttcacaagtttgtcgtttgcaaacttgtttcttttcaatctaggttta 1883545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 304
Target Start/End: Complemental strand, 8063963 - 8063842
Alignment:
Q  175 acagttgtaatttaagaggaaatttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttg 274  Q
    |||||||||  |||||||| |  ||||||| ||| |||||||||||||| || |||||||||||||| |||||||       ||| ||||||||| |||     
T  8063963 acagttgtagcttaagaggcatcttttattaattcaataatattttagagaa-ttttctcaatttctagtggatt-------cctgttttcacaaattta 8063872  T
Q  275 tcgcttgcaaacttgtttctttcaatctag 304  Q
    |||||||||||||||||  |||||||||||    
T  8063871 tcgcttgcaaacttgttcttttcaatctag 8063842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 254 - 309
Target Start/End: Complemental strand, 1220529 - 1220474
Alignment:
Q  254 aaccctattttcacaagtttgtcgcttgcaaacttgtttctttcaatctaggttta 309  Q
    |||||||||||||||||||||||| |||||||||||||  |||| || ||||||||    
T  1220529 aaccctattttcacaagtttgtcgtttgcaaacttgttcatttctatgtaggttta 1220474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 285
Target Start/End: Complemental strand, 18790311 - 18790231
Alignment:
Q  203 ttcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaa 285  Q
    |||||| | |||||||||||| | |||| ||||||||||||||||||| |||| ||||||||||| |  ||||||||||||||    
T  18790311 ttcattcagtaatattttagagagtttt-ctcaatttctggtggattctaaaatcctattttcac-atattgtcgcttgcaaa 18790231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 320
Target Start/End: Original strand, 13466720 - 13466798
Alignment:
Q  243 gtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgtttc-tttcaatctaggtttaacacttgctag 320  Q
    |||||||||  ||||||||||||| ||||||||   ||||||||||||||| ||| ||| |||||||| | ||||||||    
T  13466720 gtggattccggaaccctattttcataagtttgttttttgcaaacttgtttctttttaatataggtttagcgcttgctag 13466798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 286
Target Start/End: Complemental strand, 13886274 - 13886245
Alignment:
Q  257 cctattttcacaagtttgtcgcttgcaaac 286  Q
    ||||||||||||||||||||||||||||||    
T  13886274 cctattttcacaagtttgtcgcttgcaaac 13886245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 5e-41; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 187 - 343
Target Start/End: Complemental strand, 32163927 - 32163770
Alignment:
Q  187 taagaggaaatttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaac 286  Q
    |||||||||| ||||||||||| |||||||||||||| || |||||||||||| |  |||||||| ||||| |||||||||||||||| ||||| |||||    
T  32163927 taagaggaaacttttattcattcaataatattttagagaagttttctcaatttatcatggattccgaaaccatattttcacaagtttgacgcttacaaac 32163828  T
Q  287 ttgtttc-tttcaatctaggtttaacacttgctagcttacgcttctgactgcgtcagt 343  Q
    || |||| |||||||||||||||||| ||| ||||| | |||||||||||||||||||    
T  32163827 ttatttcttttcaatctaggtttaacgctttctagccttcgcttctgactgcgtcagt 32163770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 198 - 337
Target Start/End: Original strand, 23457591 - 23457730
Alignment:
Q  198 ttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgttt-cttt 296  Q
    ||||||||||| |||||||||||||| | |||| |||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||  |||    
T  23457591 ttttattcattcaataatattttagagagtttt-ctcaatttttggtggattccggaaccctattttcacaagtttgtcgcttgcaaacttgtttatttt 23457689  T
Q  297 caatctaggtttaacacttgctagcttacgcttctgactgc 337  Q
    ||||||||||||| | ||||||||| ||| |||||||||||    
T  23457690 caatctaggtttagcgcttgctagcctacacttctgactgc 23457730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 177 - 318
Target Start/End: Complemental strand, 32162135 - 32161993
Alignment:
Q  177 agttgtaatttaagaggaaatttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttgtc 276  Q
    ||||||||  ||||||| |  ||||||| ||| |||||||||||||| || |||||||| |||||||||||||||  |||||||||||||||||||||||    
T  32162135 agttgtaacgtaagaggcagcttttatttattcaataatattttagagaagttttctcagtttctggtggattcctgaaccctattttcacaagtttgtc 32162036  T
Q  277 gcttgcaaacttgtttc-tttcaatctaggtttaacacttgct 318  Q
     |||||||||||||||| |||| ||||||||||||| ||||||    
T  32162035 acttgcaaacttgtttcttttcgatctaggtttaacgcttgct 32161993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 198 - 343
Target Start/End: Original strand, 36647237 - 36647383
Alignment:
Q  198 ttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgtttctttc 297  Q
    ||||||||| | ||||||| ||||||   |||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  36647237 ttttattcaatcaataatactttagagttttttcctcattttttggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgttcttttc 36647336  T
Q  298 aatctaggtttaacacttgctagcttacgcttctg-actgcgtcagt 343  Q
    |||| ||||||| | ||||||||| |||||||| | |||||||||||    
T  36647337 aatcgaggtttagcgcttgctagcctacgcttccgtactgcgtcagt 36647383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 198 - 296
Target Start/End: Original strand, 4184873 - 4184971
Alignment:
Q  198 ttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgtttcttt 296  Q
    ||||||||||| |||||||||||||| | ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||| |||||||    
T  4184873 ttttattcattcaataatattttagagagtttttctcaatttctcgtggattccgaaaccctattttcacaagtttgtcgcttgcgaacttatttcttt 4184971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 175 - 341
Target Start/End: Complemental strand, 5171752 - 5171586
Alignment:
Q  175 acagttgtaatttaagaggaaatttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttg 274  Q
    ||||||||| | ||||||  |||||||||||||| |||||||||||||| | |||| |||||||||| ||||||||   ||||||||||| |||||||||    
T  5171752 acagttgtagtctaagagacaatttttattcattaaataatattttagagagtttt-ctcaatttctagtggattcttgaaccctatttttacaagtttg 5171654  T
Q  275 tcgcttgcaaacttgtttc-tttcaatctaggtttaacacttgctagcttacgcttctgactgcgtca 341  Q
    |||||||||||||||| || ||||||||||| |||| | |||| || | ||||||||  |||||||||    
T  5171653 tcgcttgcaaacttgtctcttttcaatctagatttagcgcttgttaacctacgcttccaactgcgtca 5171586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 198 - 341
Target Start/End: Original strand, 12966421 - 12966564
Alignment:
Q  198 ttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgtttctttc 297  Q
    ||||||||| | |||||||||||||| | ||||||||||||| ||||||||| |  ||||||||||||||||||| ||||||||| ||||||||  ||||    
T  12966421 ttttattcaatcaataatattttagagagtttttctcaatttttggtggatttcggaaccctattttcacaagttcgtcgcttgcgaacttgttcttttc 12966520  T
Q  298 aatctaggtttaacacttgctagcttacgcttctgactgcgtca 341  Q
    ||||||| ||||||  |||||||| || ||||| || |||||||    
T  12966521 aatctagatttaacgtttgctagcctatgcttccgagtgcgtca 12966564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 201 - 330
Target Start/End: Original strand, 33051566 - 33051695
Alignment:
Q  201 tattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgtt-tctttcaa 299  Q
    |||||||| |||||||||||||| | |||| |||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||| | ||||||    
T  33051566 tattcattcaataatattttagagagtttt-ctcaatttctagtggattccagaaccctattttcaaaagtttgtcgcttgcaaacttgttctttttcaa 33051664  T
Q  300 tctaggtttaacacttgctagcttacgcttc 330  Q
    | |||||||| | ||||||||| || |||||    
T  33051665 tttaggtttagcgcttgctagcctaagcttc 33051695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 198 - 341
Target Start/End: Original strand, 8294525 - 8294666
Alignment:
Q  198 ttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgtt-tcttt 296  Q
    ||||||||| ||||||||||||||||    |||| |||||||||||||||||   |||| ||||||| ||||||||||||||||||||| |||| |  ||    
T  8294525 ttttattcaatgaataatattttagag---ttttttcaatttctggtggattatgaaacactatttttacaagtttgtcgcttgcaaacgtgttcttctt 8294621  T
Q  297 caatctaggtttaacacttgctagcttacgcttctgactgcgtca 341  Q
    | ||||| ||||| ||||||||||| || ||||| ||||||||||    
T  8294622 ctatctaagtttagcacttgctagcctatgcttccgactgcgtca 8294666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 259 - 343
Target Start/End: Original strand, 28737911 - 28737995
Alignment:
Q  259 tattttcacaagtttgtcgcttgcaaacttgtttctttcaatctaggtttaacacttgctagcttacgcttctgactgcgtcagt 343  Q
    |||||||| |||||||||||||||||||||| |  |||||||||||||||| ||||||||||  |||||||| ||||||||||||    
T  28737911 tattttcaaaagtttgtcgcttgcaaacttgctcttttcaatctaggtttagcacttgctagactacgcttccgactgcgtcagt 28737995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 198 - 288
Target Start/End: Original strand, 36648910 - 36649001
Alignment:
Q  198 ttttattcattgaataatattttagataattttt-ctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaactt 288  Q
    ||||||||| | |||||||||||||| | ||||| || |||||||||||||||||| ||||||||||| |||| ||||||||||||||||||    
T  36648910 ttttattcaatcaataatattttagagagttttttcttaatttctggtggattccagaaccctatttttacaattttgtcgcttgcaaactt 36649001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 175 - 330
Target Start/End: Original strand, 1518112 - 1518269
Alignment:
Q  175 acagttgtaatttaagaggaaatttttattcattgaataatattttagataatttt--tctcaatttctggtggattccaaaaccctattttcacaagtt 272  Q
    ||||||||||  ||||||  || || |||||| | |||||||||||||| | ||||  ||||||||||| ||||||| |  ||||||||||||| |||||    
T  1518112 acagttgtaacctaagagataacttatattcaataaataatattttagaaagtttttttctcaatttctagtggatttcggaaccctattttcataagtt 1518211  T
Q  273 tgtcgcttgcaaacttgtttctttcaatctaggtttaacacttgctagcttacgcttc 330  Q
     ||||||||| |||||||  ||||||||||||||| | | ||||||||  ||||||||    
T  1518212 cgtcgcttgcgaacttgtccctttcaatctaggttaagcgcttgctaggatacgcttc 1518269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 175 - 309
Target Start/End: Original strand, 21772296 - 21772430
Alignment:
Q  175 acagttgtaatttaagaggaaatttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttg 274  Q
    |||||||||  |||||||  || |||||||| || |||||||||| |    | |||||||||||| || |||||||   ||||||||||||| |||||||    
T  21772296 acagttgtagcttaagagataacttttattcgttcaataatatttcaagagagttttctcaatttgtgatggattcaggaaccctattttcataagtttg 21772395  T
Q  275 tcgcttgcaaacttgtttctttcaatctaggttta 309  Q
    |||||||||||||||||| |||||||||| |||||    
T  21772396 tcgcttgcaaacttgtttttttcaatctaagttta 21772430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 197 - 326
Target Start/End: Original strand, 28737781 - 28737910
Alignment:
Q  197 tttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaag-tttgtcgcttgcaaacttgtttctt 295  Q
    |||||||||||| |||||||||||||| | |||| ||||||||||| |||||||  |||| ||||||||||||| |||||| |||||||||||  |  ||    
T  28737781 tttttattcattcaataatattttagagagtttt-ctcaatttctgttggattctgaaactctattttcacaagttttgtctcttgcaaacttactcttt 28737879  T
Q  296 tcaatctaggtttaacacttgctagcttacg 326  Q
    ||||| |||||||| | ||||||||| ||||    
T  28737880 tcaatttaggtttagcgcttgctagcctacg 28737910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 237 - 330
Target Start/End: Original strand, 15129373 - 15129466
Alignment:
Q  237 tttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgtttctttcaatctaggtttaacacttgctagcttacgcttc 330  Q
    |||||||| |||||   ||||||||||||||||||||||||||||| ||||||||  |||| ||||||||||| | ||||||||| ||||||||    
T  15129373 tttctggttgattctggaaccctattttcacaagtttgtcgcttgcgaacttgttcttttctatctaggtttagcgcttgctagcctacgcttc 15129466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 228 - 312
Target Start/End: Original strand, 23456549 - 23456634
Alignment:
Q  228 ttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgtttc-tttcaatctaggtttaaca 312  Q
    |||||||| |||| ||||||||||| |||  |||||||| |||||||||||||||||||||||||| ||||||| |||||||||||    
T  23456549 ttttctcagtttccggtggattccagaactttattttcaaaagtttgtcgcttgcaaacttgtttcttttcaatataggtttaaca 23456634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 254 - 319
Target Start/End: Complemental strand, 27952407 - 27952342
Alignment:
Q  254 aaccctattttcacaagtttgtcgcttgcaaacttgtttctttcaatctaggtttaacacttgcta 319  Q
    ||||||||||||||||||||||||||||||||||||||  |||| ||||||||||| | |||||||    
T  27952407 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcttgcta 27952342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 185 - 309
Target Start/End: Original strand, 33053349 - 33053473
Alignment:
Q  185 tttaagaggaaatttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaa 284  Q
    ||||||||  || ||||||||||| ||||||||||||||  ||||| ||||||||||||| |||| || ||||| ||||||| || |||||||||| |||    
T  33053349 tttaagagacaacttttattcattcaataatattttagaggatttt-ctcaatttctggtagatttcataacccgattttcataattttgtcgcttacaa 33053447  T
Q  285 acttgtt-tctttcaatctaggttta 309  Q
    |||| || | ||||||||||| ||||    
T  33053448 acttattctttttcaatctagattta 33053473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 254 - 319
Target Start/End: Original strand, 33655628 - 33655693
Alignment:
Q  254 aaccctattttcacaagtttgtcgcttgcaaacttgtttctttcaatctaggtttaacacttgcta 319  Q
    ||||||||||||||||||||||||||||||||||||| | |||| ||||||||||| | |||||||    
T  33655628 aaccctattttcacaagtttgtcgcttgcaaacttgtatttttctatctaggtttagcgcttgcta 33655693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 226 - 289
Target Start/End: Complemental strand, 12124013 - 12123950
Alignment:
Q  226 atttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttg 289  Q
    |||||||||||||| |||||||||||  |||| |||||||||| ||||||||||||||||||||    
T  12124013 atttttctcaatttttggtggattcctgaaccatattttcacaggtttgtcgcttgcaaacttg 12123950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 198 - 319
Target Start/End: Original strand, 18945905 - 18946026
Alignment:
Q  198 ttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgtttctt-t 296  Q
    |||| |||||| |||||||||||||| ||||||  | ||||||||||| |||||  ||| || || |||||||||||||||||||||| || |||||| |    
T  18945905 ttttgttcattcaataatattttagagaattttatt-aatttctggtgaattccggaactctgttctcacaagtttgtcgcttgcaaatttatttcttct 18946003  T
Q  297 caatctaggtttaacacttgcta 319  Q
    ||||||| ||||| | |||||||    
T  18946004 caatctacgtttagcgcttgcta 18946026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 198 - 287
Target Start/End: Original strand, 36615153 - 36615243
Alignment:
Q  198 ttttattcattgaataatattttagataattttt-ctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaact 287  Q
    ||||||||| | |||||||||||||| | ||||| || |||||||||||||||||  |||| |||||| |||| |||||||||||||||||    
T  36615153 ttttattcaatcaataatattttagagagttttttcttaatttctggtggattccggaaccttatttttacaattttgtcgcttgcaaact 36615243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 254 - 319
Target Start/End: Original strand, 22011436 - 22011501
Alignment:
Q  254 aaccctattttcacaagtttgtcgcttgcaaacttgtttctttcaatctaggtttaacacttgcta 319  Q
    ||||||||||||||||||||||| ||||||||||||||  |||| ||||||||||| | |||||||    
T  22011436 aaccctattttcacaagtttgtcacttgcaaacttgttcttttctatctaggtttagcgcttgcta 22011501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 257 - 319
Target Start/End: Original strand, 2155970 - 2156032
Alignment:
Q  257 cctattttcacaagtttgtcgcttgcaaacttgtttctttcaatctaggtttaacacttgcta 319  Q
    ||||||||||||||||||||||| |||||||||||  |||| ||||||||||| | |||||||    
T  2155970 cctattttcacaagtttgtcgctcgcaaacttgttcttttctatctaggtttagcgcttgcta 2156032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 254 - 319
Target Start/End: Complemental strand, 27956243 - 27956178
Alignment:
Q  254 aaccctattttcacaagtttgtcgcttgcaaacttgtttctttcaatctaggtttaacacttgcta 319  Q
    ||||||||||||| | ||||||||||||||||||||||  |||| ||||||||||| | |||||||    
T  27956243 aaccctattttcataggtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcttgcta 27956178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 284
Target Start/End: Original strand, 31634020 - 31634105
Alignment:
Q  197 tttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccc-tattttcacaagtttgtcgcttgcaa 284  Q
    |||||||||||| |||||||||| ||||  ||| ||||||||||||||||||||| |||||| |||||| | | |||||||||||||||    
T  31634020 tttttattcatt-aataatatttgagat--tttctctcaatttctggtggattccgaaacccttattttgataggtttgtcgcttgcaa 31634105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 254 - 319
Target Start/End: Original strand, 31636337 - 31636402
Alignment:
Q  254 aaccctattttcacaagtttgtcgcttgcaaacttgtttctttcaatctaggtttaacacttgcta 319  Q
    |||| ||||||||||||||||||||||||||||| |||  |||| ||||||||||| | |||||||    
T  31636337 aaccatattttcacaagtttgtcgcttgcaaactagttcttttctatctaggtttagcgcttgcta 31636402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 257 - 309
Target Start/End: Original strand, 31634107 - 31634159
Alignment:
Q  257 cctattttcacaagtttgtcgcttgcaaacttgtttctttcaatctaggttta 309  Q
    ||||||||||||||||||||||| |||||||||||  |||| |||||||||||    
T  31634107 cctattttcacaagtttgtcgctagcaaacttgttcttttctatctaggttta 31634159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 275
Target Start/End: Original strand, 25458163 - 25458261
Alignment:
Q  177 agttgtaatttaagaggaaatttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttgt 275  Q
    ||||||| ||||||||| || ||| |||   | |||||||||||| | ||| ||||||||||||| ||||||  |  ||||||||||||||||||||||    
T  25458163 agttgtagtttaagaggtaactttgatttcatcaataatattttaaagaatgtttctcaatttctagtggatatcgcaaccctattttcacaagtttgt 25458261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 177 - 309
Target Start/End: Complemental strand, 1218452 - 1218320
Alignment:
Q  177 agttgtaatttaagaggaaatttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttgtc 276  Q
    ||||||| | ||||||  || ||||||||||| |||||||||||||| || ||||||||||||||  | ||||   |||  |||||||||||| ||||||    
T  1218452 agttgtagtataagagacaacttttattcattcaataatattttagagaa-ttttctcaatttctaatagattatgaaattctattttcacaaatttgtc 1218354  T
Q  277 gcttgcaaacttgtt-tctttcaatctaggttta 309  Q
    | || ||||||| || | |||||||||| |||||    
T  1218353 gtttacaaacttattctttttcaatctaagttta 1218320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 316
Target Start/End: Original strand, 2165899 - 2165956
Alignment:
Q  259 tattttcacaagtttgtcgcttgcaaacttgtttctttcaatctaggtttaacacttg 316  Q
    |||||| | |||||||| |||||||||||||||  |||| ||||||||||||| ||||    
T  2165899 tattttgataagtttgttgcttgcaaacttgttcttttctatctaggtttaacgcttg 2165956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 284
Target Start/End: Original strand, 31636253 - 31636338
Alignment:
Q  197 tttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccc-tattttcacaagtttgtcgcttgcaa 284  Q
    |||||||||||| |||||||||  ||||  ||| |||||||||||||||||||||  ||||| |||||| | | |||||||||||||||    
T  31636253 tttttattcatt-aataatattcaagat--tttctctcaatttctggtggattccggaacccttattttgataggtttgtcgcttgcaa 31636338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 198 - 329
Target Start/End: Complemental strand, 2472833 - 2472702
Alignment:
Q  198 ttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgtttctttc 297  Q
    ||||||||| | |||||||||||||  | |||||||||||||||||||||||||  |||||||||||||||||||||||| |||||||||||| ||||||    
T  2472833 ttttattcaatcaataatattttagtgagtttttctcaatttctggtggattccggaaccctattttcacaagtttgtcggttgcaaacttgtctctttc 2472734  T
Q  298 aatctaggtttaacacttgctagcttacgctt 329  Q
    ||| |||||||| | ||||||||| |||||||    
T  2472733 aatttaggtttagcgcttgctagcctacgctt 2472702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 201 - 342
Target Start/End: Complemental strand, 2107994 - 2107855
Alignment:
Q  201 tattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgtttctttcaat 300  Q
    |||||||| |||| ||||||||| | |||| |||||| ||||||||||||  || || |||||| |||||||||| |||||||||| |||||||||||||    
T  2107994 tattcattcaatagtattttagagagtttt-ctcaatctctggtggattcggaa-ccttatttttacaagtttgttgcttgcaaacctgtttctttcaat 2107897  T
Q  301 ctaggtttaacacttgctagcttacgcttctgactgcgtcag 342  Q
     ||| |||||| ||||||||| || |||||  ||||||||||    
T  2107896 ttagatttaacgcttgctagcctaagcttccaactgcgtcag 2107855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 231 - 319
Target Start/End: Complemental strand, 45168434 - 45168343
Alignment:
Q  231 tctcaatttctggtggattccaaaaccctat---tttcacaagtttgtcgcttgcaaacttgtttctttcaatctaggtttaacacttgcta 319  Q
    ||||||||||| ||||||||   ||||||||   ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  45168434 tctcaatttcttgtggattctggaaccctatatttttcacaagtttgtcgcttgcaaacttgtttatttcaatctaggtttagcacttgcta 45168343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 254 - 319
Target Start/End: Complemental strand, 43304049 - 43303984
Alignment:
Q  254 aaccctattttcacaagtttgtcgcttgcaaacttgtttctttcaatctaggtttaacacttgcta 319  Q
    ||||||||||||||||||||||||||||||||||||||  |||| ||||||||||| | |||||||    
T  43304049 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcttgcta 43303984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 330
Target Start/End: Complemental strand, 8536528 - 8536381
Alignment:
Q  187 taagaggaaatttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaac 286  Q
    ||||||| || |||||||||||  ||||||||||||| | |||  ||||||||||||||||||||  || |||||||||| |||| |||| ||||||| |    
T  8536528 taagaggcaacttttattcattagataatattttagagagtttc-ctcaatttctggtggattccggaatcctattttcaaaagtctgtcccttgcaacc 8536430  T
Q  287 ttg-----tttctttcaatctaggtttaacacttgctagcttacgcttc 330  Q
    |||     ||| |||| ||||||||||| ||||||||||| ||| ||||    
T  8536429 ttgatttttttttttctatctaggtttagcacttgctagcctacacttc 8536381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 254 - 309
Target Start/End: Original strand, 5128909 - 5128964
Alignment:
Q  254 aaccctattttcacaagtttgtcgcttgcaaacttgtttctttcaatctaggttta 309  Q
    ||||||||||||||||||||||||||||||||||||||  |||| |||||||||||    
T  5128909 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttctatctaggttta 5128964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 254 - 319
Target Start/End: Complemental strand, 3063826 - 3063761
Alignment:
Q  254 aaccctattttcacaagtttgtcgcttgcaaacttgtttctttcaatctaggtttaacacttgcta 319  Q
    ||||||||||||||||||||||||||||||||||  ||  |||| ||||||||||||| |||||||    
T  3063826 aaccctattttcacaagtttgtcgcttgcaaactctttcttttctatctaggtttaacgcttgcta 3063761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 254 - 319
Target Start/End: Complemental strand, 43306761 - 43306696
Alignment:
Q  254 aaccctattttcacaagtttgtcgcttgcaaacttgtttctttcaatctaggtttaacacttgcta 319  Q
    |||||||||||||||||||||| |||||||||||||||  |||| ||||||||||| | |||||||    
T  43306761 aaccctattttcacaagtttgttgcttgcaaacttgttcttttctatctaggtttagcgcttgcta 43306696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 254 - 340
Target Start/End: Original strand, 33175835 - 33175922
Alignment:
Q  254 aaccctattttcacaagtttgtcgcttgcaaacttgtttc-tttcaatctaggtttaacacttgctagcttacgcttctgactgcgtc 340  Q
    ||||||||||||| |||||||||  |||||||||||| || ||||||| |||||||| |  |||||||| |||||||| |||||||||    
T  33175835 aaccctattttcataagtttgtcctttgcaaacttgtctcttttcaatataggtttatcgtttgctagcctacgcttccgactgcgtc 33175922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 198 - 268
Target Start/End: Complemental strand, 1320193 - 1320124
Alignment:
Q  198 ttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcaca 268  Q
    ||||||||||| |||||||||||||| |||||| ||| |||||||||||||||   |||||||||||||||    
T  1320193 ttttattcattcaataatattttagagaatttt-ctctatttctggtggattctggaaccctattttcaca 1320124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 330
Target Start/End: Complemental strand, 365698 - 365605
Alignment:
Q  237 tttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgtttctttcaatctaggtttaacacttgctagcttacgcttc 330  Q
    |||||||||||||| | ||||||||||||||||||||||||||||  || |||||  ||||  | |||||||| |  |||||||| ||||||||    
T  365698 tttctggtggattcaagaaccctattttcacaagtttgtcgcttgggaatttgttattttctttttaggtttagcgtttgctagcctacgcttc 365605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 256 - 337
Target Start/End: Complemental strand, 35908572 - 35908491
Alignment:
Q  256 ccctattttcacaagtttgtcgcttgcaaacttgtttctttcaatctaggtttaacacttgctagcttacgcttctgactgc 337  Q
    ||||||||| |||||||||||| ||||||| ||  ||||||| ||||||||||| | ||||||| | || ||||| ||||||    
T  35908572 ccctatttttacaagtttgtcgtttgcaaattttgttctttctatctaggtttagcgcttgctaacctatgcttccgactgc 35908491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 319
Target Start/End: Complemental strand, 5324744 - 5324655
Alignment:
Q  228 ttttctcaattt-ctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgtttc-tttcaatctaggtttaacacttgcta 319  Q
    |||||||||||| |||||||||||||     |||||||||||| ||| |||||||||||||  |||| |||||||| ||||||||| |||||||    
T  5324744 ttttctcaattttctggtggattccat----ctattttcacaaatttatcgcttgcaaactcttttcttttcaatcaaggtttaacgcttgcta 5324655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 198 - 281
Target Start/End: Original strand, 41152494 - 41152577
Alignment:
Q  198 ttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttg 281  Q
    |||||||||||  ||||||||||  |  | |||||||||||| | ||||||||  |||| |||||||||||| |||||||||||    
T  41152494 ttttattcattcgataatatttttaaagagttttctcaattttttgtggattctgaaacactattttcacaaatttgtcgcttg 41152577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 319
Target Start/End: Complemental strand, 3068964 - 3068899
Alignment:
Q  254 aaccctattttcacaagtttgtcgcttgcaaacttgtttctttcaatctaggtttaacacttgcta 319  Q
    ||||||||||| |||||||| |  ||||||||||||||  |||| ||||||||||| | |||||||    
T  3068964 aaccctatttttacaagttttttccttgcaaacttgttcttttctatctaggtttagcgcttgcta 3068899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 330
Target Start/End: Original strand, 52708844 - 52708921
Alignment:
Q  254 aaccctattttcacaagtttgtcgcttgcaaacttgtt-tctttcaatctaggtttaacacttgctagcttacgcttc 330  Q
    ||||||| |||||||||||| ||||||||||| ||||| | |||| ||||||||||| | |||| || | ||||||||    
T  52708844 aaccctactttcacaagtttatcgcttgcaaatttgttctttttctatctaggtttagcgcttgttaacctacgcttc 52708921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 187 - 309
Target Start/End: Original strand, 11658865 - 11658987
Alignment:
Q  187 taagaggaaatttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaac 286  Q
    |||||| ||| ||||||||| | |||||||||||||| | ||||||||||||| |||||||||||||||| |||||||||||||||| |||||||||||     
T  11658865 taagagaaaacttttattcaatcaataatattttagagagtttttctcaatttttggtggattccaaaactctattttcacaagtttatcgcttgcaaat 11658964  T
Q  287 ttgtttctttcaatctaggttta 309  Q
    |||||  ||||||||||||||||    
T  11658965 ttgttcttttcaatctaggttta 11658987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 198 - 307
Target Start/End: Original strand, 12882067 - 12882177
Alignment:
Q  198 ttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgtttctt-t 296  Q
    ||||||||||| |||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||| |||| |    
T  12882067 ttttattcattcaataatattttagagagtttttctcaatttctggtggattccgaaaccctattttcacaagtttgtcgctttaaaacttgtctcttct 12882166  T
Q  297 caatctaggtt 307  Q
    |||||||||||    
T  12882167 caatctaggtt 12882177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 198 - 330
Target Start/End: Complemental strand, 27822263 - 27822130
Alignment:
Q  198 ttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgtttc-ttt 296  Q
    ||||||||| | |||||||||||||| | ||||||||||||||||||||||| |  |||||| ||||||||||||||||||||| ||||||||| | |||    
T  27822263 ttttattcaatcaataatattttagagagtttttctcaatttctggtggatttcggaaccctgttttcacaagtttgtcgcttgaaaacttgttcctttt 27822164  T
Q  297 caatctaggtttaacacttgctagcttacgcttc 330  Q
    | || |||||||| |  |||||||| ||||||||    
T  27822163 ctatttaggtttagcgtttgctagcctacgcttc 27822130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 195 - 341
Target Start/End: Original strand, 1127196 - 1127345
Alignment:
Q  195 aatttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgtttc- 293  Q
    |||||||||||||| |||| ||||||||| | |||| |||||||| ||||| ||||| |||| |||||||||||| |||||||||||||||||||||||     
T  1127196 aatttttattcattcaatattattttagagagtttt-ctcaatttttggtgtattccgaaacactattttcacaaatttgtcgcttgcaaacttgtttct 1127294  T
Q  294 tttcaatctaggtttaacacttgcta---gcttacgcttctgactgcgtca 341  Q
    ||| |||||||||||| | || ||||   || |||||||||||||| ||||    
T  1127295 ttttaatctaggtttagcgctcgctagccgcctacgcttctgactgtgtca 1127345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 34390067 - 34390006
Alignment:
Q  22 gataccttcataaaatactttcatcattttaccaaacaaagaacatattcaataatgaattt 83  Q
    |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  34390067 gataccttcataaaatactttcataattttaccaaacaaagaacgtattcaataatgaattt 34390006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 210 - 308
Target Start/End: Complemental strand, 33615636 - 33615538
Alignment:
Q  210 aataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgtt-tctttcaatctaggttt 308  Q
    |||||||||||||| | ||||| ||||||| ||||| ||||  ||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||    
T  33615636 aataatattttagagagttttt-tcaatttatggtgaattctgaaaccctattttcacaagtttgtcgcttgcaaacttgttctttttctatctaggttt 33615538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 177 - 319
Target Start/End: Original strand, 32361292 - 32361433
Alignment:
Q  177 agttgtaatttaagaggaaatttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttgtc 276  Q
    |||||||  |||||||  || ||||||||||| |||||||||||||| | ||||||||||||||| || ||||||  |||| |||||| |||| ||| ||    
T  32361292 agttgtagcttaagagacaacttttattcattcaataatattttagagagtttttctcaatttctcgtagattccggaaccttatttttacaattttatc 32361391  T
Q  277 gcttgcaaacttgtttctttcaatctaggtttaacacttgcta 319  Q
    |||||||||| | ||  ||||||||||| |||||| |||||||    
T  32361392 gcttgcaaacat-ttcttttcaatctagatttaacgcttgcta 32361433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 203 - 326
Target Start/End: Original strand, 22873762 - 22873887
Alignment:
Q  203 ttcattgaataatattttagataatttttctcaatttct-ggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgtttc-tttcaat 300  Q
    ||||||||||| ||||| ||| |  |||||||||||| | ||||||||||  |||| |  ||||||||||||||||| ||||||||||| || |||||||    
T  22873762 ttcattgaatattatttcagagagcttttctcaattttttggtggattccggaacctttatttcacaagtttgtcgcatgcaaacttgtctcttttcaat 22873861  T
Q  301 ctaggtttaacacttgctagcttacg 326  Q
     |||||||||||||||||||| ||||    
T  22873862 ttaggtttaacacttgctagcctacg 22873887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 228 - 332
Target Start/End: Complemental strand, 8049080 - 8048976
Alignment:
Q  228 ttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgtttctttcaatctaggtttaacacttgctagcttacgc 327  Q
    ||||||||||||||||||||| ||  | || |||||||||||||||||| ||||||||||| ||  ||| |||||||| ||||  ||||||||| |||||    
T  8049080 ttttctcaatttctggtggatcccggagccttattttcacaagtttgtcacttgcaaactttttctttttaatctaggattaatgcttgctagcctacgc 8048981  T
Q  328 ttctg 332  Q
    |||||    
T  8048980 ttctg 8048976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 254 - 309
Target Start/End: Complemental strand, 29340895 - 29340840
Alignment:
Q  254 aaccctattttcacaagtttgtcgcttgcaaacttgtttctttcaatctaggttta 309  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||    
T  29340895 aaccctattttcacaagtttgtcgcttgcaaacttgtttttttctatctaggttta 29340840  T

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Target: chr6; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 254 - 319
Target Start/End: Original strand, 3536034 - 3536099
Alignment:
Q  254 aaccctattttcacaagtttgtcgcttgcaaacttgtttctttcaatctaggtttaacacttgcta 319  Q
    ||||||||||||||||||||||||||||||||||||||  |||| ||||||||||| | |||||||    
T  3536034 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcttgcta 3536099  T

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Target: chr6; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 228 - 332
Target Start/End: Original strand, 22910776 - 22910881
Alignment:
Q  228 ttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgt-ttctttcaatctaggtttaacacttgctagcttacg 326  Q
    |||||||||||| |||||| ||||| |||| |  ||||| ||||||||||  ||||||||||| || |||||||||||||||||  ||||||||| ||||    
T  22910776 ttttctcaatttttggtggtttccagaacctttatttcataagtttgtcgaatgcaaacttgtcttttttcaatctaggtttaaagcttgctagcctacg 22910875  T
Q  327 cttctg 332  Q
    ||||||    
T  22910876 cttctg 22910881  T

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Target: chr6; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 237 - 330
Target Start/End: Original strand, 18727089 - 18727184
Alignment:
Q  237 tttctggtggattccaaaaccc-tatttt-cacaagtttgtcgcttgcaaacttgtttctttcaatctaggtttaacacttgctagcttacgcttc 330  Q
    ||||||||||||| || ||||| |||||| |||||||||||||||||| ||||||| | |||||||||||||||| |  |||||||| ||||||||    
T  18727089 tttctggtggatttcagaacccctatttttcacaagtttgtcgcttgcgaacttgtgtttttcaatctaggtttagcgtttgctagcctacgcttc 18727184  T

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Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 254 - 319
Target Start/End: Original strand, 3542245 - 3542310
Alignment:
Q  254 aaccctattttcacaagtttgtcgcttgcaaacttgtttctttcaatctaggtttaacacttgcta 319  Q
    ||||||||||||||||||||||||||| ||||||||||  |||| ||||||||||| | |||||||    
T  3542245 aaccctattttcacaagtttgtcgcttacaaacttgttcttttctatctaggtttagcgcttgcta 3542310  T

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Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 227 - 288
Target Start/End: Complemental strand, 12778515 - 12778454
Alignment:
Q  227 tttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaactt 288  Q
    |||||||||||||||||| ||||||| |||| |||||||||||| || ||||||||||||||    
T  12778515 tttttctcaatttctggtagattccagaaccttattttcacaagattatcgcttgcaaactt 12778454  T

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Target: chr6; HSP #16
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 228 - 332
Target Start/End: Original strand, 22889234 - 22889339
Alignment:
Q  228 ttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgt-ttctttcaatctaggtttaacacttgctagcttacg 326  Q
    |||||||||||| | |||| ||||| |||| |  ||||| ||||||||||  ||||||||||| || |||||||||||||||||  ||||||||| ||||    
T  22889234 ttttctcaattttttgtggtttccagaacctttatttcataagtttgtcgaatgcaaacttgtcttttttcaatctaggtttaaagcttgctagcctacg 22889333  T
Q  327 cttctg 332  Q
    ||||||    
T  22889334 cttctg 22889339  T

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Target: chr6; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 296
Target Start/End: Original strand, 14238419 - 14238478
Alignment:
Q  237 tttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgtttcttt 296  Q
    |||||| |||| |||  |||| ||||||||||||||||||||||||||||||||||||||    
T  14238419 tttctgatggactccggaaccttattttcacaagtttgtcgcttgcaaacttgtttcttt 14238478  T

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Target: chr6; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 258 - 309
Target Start/End: Original strand, 30052207 - 30052258
Alignment:
Q  258 ctattttcacaagtttgtcgcttgcaaacttgtttctttcaatctaggttta 309  Q
    ||||||||||||||||||||||||||||||||||  |||| |||||||||||    
T  30052207 ctattttcacaagtttgtcgcttgcaaacttgttcttttctatctaggttta 30052258  T

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Target: chr6; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 258 - 319
Target Start/End: Original strand, 30049920 - 30049981
Alignment:
Q  258 ctattttcacaagtttgtcgcttgcaaacttgtttctttcaatctaggtttaacacttgcta 319  Q
    ||||||||||||||||||||||||||||||||||  |||| || |||||||| | |||||||    
T  30049920 ctattttcacaagtttgtcgcttgcaaacttgttcttttctatataggtttagcgcttgcta 30049981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 228 - 296
Target Start/End: Complemental strand, 33215278 - 33215210
Alignment:
Q  228 ttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgtttcttt 296  Q
    |||| ||||||||||||||||| |  |||   ||||||||| |||||||||||||||||||||||||||    
T  33215278 ttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttcttt 33215210  T

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Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 92
Target Start/End: Original strand, 34490142 - 34490226
Alignment:
Q  8 aatgcgtcatattggataccttcataaaatactttcatcattttaccaaacaaagaacatattcaataatg-aatttcattattct 92  Q
    |||||||||  |||||||| ||||||||||||||||||||||||   | ||||||||||||  |||||||| ||||| ||||||||    
T  34490142 aatgcgtcaatttggatac-ttcataaaatactttcatcattttgttagacaaagaacatacccaataatgaaattttattattct 34490226  T

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Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 264
Target Start/End: Complemental strand, 34373924 - 34373865
Alignment:
Q  204 tcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctatttt 264  Q
    ||||| |||||||||||||| | |||| ||||||||||||||||||||| |||| ||||||    
T  34373924 tcattcaataatattttagagagtttt-ctcaatttctggtggattccataaccatatttt 34373865  T

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Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 284
Target Start/End: Complemental strand, 24443215 - 24443130
Alignment:
Q  198 ttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaa 284  Q
    ||||||||||| |||||||||  ||| | |||| || |||||||||| |||||   ||||||||||| | |||||||||||||||||    
T  24443215 ttttattcattcaataatattgcagagagtttt-cttaatttctggttgattctggaaccctatttttataagtttgtcgcttgcaa 24443130  T

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Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 340
Target Start/End: Complemental strand, 18718279 - 18718201
Alignment:
Q  261 ttttcacaagtttgtcgcttgcaaacttgtttctttcaatctaggtttaacacttgctagcttacgcttctg-actgcgtc 340  Q
    ||||||||||||||||  |||| || |||| | |||||||||||||||| | ||||||||| ||| |||||| ||||||||    
T  18718279 ttttcacaagtttgtc--ttgcgaatttgtctttttcaatctaggtttagcgcttgctagcctacacttctgtactgcgtc 18718201  T

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Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 288
Target Start/End: Original strand, 24664206 - 24664298
Alignment:
Q  195 aatttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaactt 288  Q
    |||||||||||||| |||||||||| |||  | |||||| ||| | ||||||||| | ||||| |||||| |||  ||| ||||||||||||||    
T  24664206 aatttttattcatttaataatatttcaga-gagttttcttaatctttggtggatttcgaaaccttatttttacatttttatcgcttgcaaactt 24664298  T

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Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 284
Target Start/End: Original strand, 3535951 - 3536035
Alignment:
Q  198 ttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccc-tattttcacaagtttgtcgcttgcaa 284  Q
    ||||||||||| |||||||||  ||||  ||| |||||||||||||||||||||  ||||| |||||| | | |||||||||||||||    
T  3535951 ttttattcatt-aataatattcgagat--tttctctcaatttctggtggattccggaacccttattttgataggtttgtcgcttgcaa 3536035  T

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Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 284
Target Start/End: Original strand, 3542162 - 3542246
Alignment:
Q  198 ttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccc-tattttcacaagtttgtcgcttgcaa 284  Q
    ||||||||||| |||||||||  ||||  ||| |||||||||||||||||||||  ||||| |||||| | | |||||||||||||||    
T  3542162 ttttattcatt-aataatattcgagat--tttctctcaatttctggtggattccggaacccttattttgataggtttgtcgcttgcaa 3542246  T

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Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 175 - 340
Target Start/End: Original strand, 10925662 - 10925824
Alignment:
Q  175 acagttgtaatttaagaggaaatttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttg 274  Q
    |||||||||  ||||||||||| ||||||||||| |||||||||||||| | ||||| |||||||  ||||||||||| |||| |||||| |||||||||    
T  10925662 acagttgtagcttaagaggaaacttttattcattcaataatattttagagagttttt-tcaattttcggtggattccagaaccatatttttacaagtttg 10925760  T
Q  275 tcgcttgcaaacttgtttctttcaatctaggtttaacacttgctagcttacgcttctgactgcgtc 340  Q
    ||||||||||| |||||  ||||||| |||||||| | ||||||||| | |||||| |||||||||    
T  10925761 tcgcttgcaaaattgtt--tttcaatttaggtttagcgcttgctagcctccgcttccgactgcgtc 10925824  T

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Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 198 - 329
Target Start/End: Original strand, 12944061 - 12944192
Alignment:
Q  198 ttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgtttc-ttt 296  Q
    ||||||||||| |||| ||||||||| | |||| ||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||| |||    
T  12944061 ttttattcattcaatattattttagagagtttt-ctcaatttctggtggattccagaaccctatttttacaagtttgtcgtttgcaaacttgtttctttt 12944159  T
Q  297 caatctaggtttaacacttgctagcttacgctt 329  Q
    |||||||| |||| | ||||||||| |||||||    
T  12944160 caatctagatttagcgcttgctagcctacgctt 12944192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 198 - 330
Target Start/End: Original strand, 31915494 - 31915626
Alignment:
Q  198 ttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgtttctttc 297  Q
    ||||||||| | | || ||||||||| | |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  31915494 ttttattcaatcagtagtattttagagagtttttctcaatttctggtggattccggaaccctattttcacaagtttgtcgcttgcaaacttgtttctttc 31915593  T
Q  298 aatctaggtttaacacttgctagcttacgcttc 330  Q
    || ||| |||||   ||||||||| | ||||||    
T  31915594 aacctaagtttagtgcttgctagcctgcgcttc 31915626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 175 - 330
Target Start/End: Original strand, 9030939 - 9031094
Alignment:
Q  175 acagttgtaatttaagaggaaatttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttg 274  Q
    |||||||||| ||||| |||| |||| ||||||| |||||||||||||| || |||||||||||| |||||||||| | ||||||||||||| ||||||     
T  9030939 acagttgtaacttaagtggaactttt-attcattcaataatattttagagaagttttctcaatttatggtggattctacaaccctattttcataagttta 9031037  T
Q  275 tcgcttgcaaacttgtttc-tttcaatctaggtttaacacttgctagcttacgcttc 330  Q
    | |||||||||||| || | ||||||| ||||||||  |||||||||| ||||||||    
T  9031038 ttgcttgcaaacttattccttttcaatataggtttagtacttgctagcctacgcttc 9031094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 198 - 342
Target Start/End: Original strand, 50713658 - 50713802
Alignment:
Q  198 ttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgtttc-ttt 296  Q
    ||||||||||| ||||||||||| || | |||| |||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||| || |||    
T  50713658 ttttattcattcaataatatttttgagagtttt-ctcaatttctggtggattccgaaaccctattttcacaagtttgtcgcctgcgaacttgtctctttt 50713756  T
Q  297 caatctaggtttaacacttgctagcttacgcttctgactgcgtcag 342  Q
    ||||||||||||| |  ||| |||| |||| ||| |||||| ||||    
T  50713757 caatctaggtttagcggttgttagcctacgtttccgactgcatcag 50713802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 228 - 339
Target Start/End: Original strand, 8221462 - 8221574
Alignment:
Q  228 ttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgtttct-ttcaatctaggtttaacacttgctagcttacg 326  Q
    ||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||| ||| |||||||| |||||| |||| |||||| ||||    
T  8221462 ttttctcaatttctggtggattccagaaccctattttcataagtttgtcgtttgcaaacttgtctctattcaatcttggtttagcactagctagcctacg 8221561  T
Q  327 cttctgactgcgt 339  Q
    | || ||||||||    
T  8221562 catccgactgcgt 8221574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 198 - 343
Target Start/End: Complemental strand, 28660891 - 28660745
Alignment:
Q  198 ttttattcattgaataatattttagataatttttctcaattt-ctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgtttctt- 295  Q
    ||||||| ||| |||||||||||||| | |||| || ||||| |||||||||| |  ||||||||||||||||||||||||||||||||||||||||||     
T  28660891 ttttattaattcaataatattttagagagtttt-ctaaattttctggtggatttcggaaccctattttcacaagtttgtcgcttgcaaacttgtttctta 28660793  T
Q  296 tcaatctaggtttaacacttgctagcttacgcttctgactgcgtcagt 343  Q
    || ||||||||||| |  |||||| | |||||||| |||| |||||||    
T  28660792 tctatctaggtttagcgtttgctatcctacgcttccgactacgtcagt 28660745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 198 - 342
Target Start/End: Original strand, 10927139 - 10927281
Alignment:
Q  198 ttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgtt-tcttt 296  Q
    ||||||||||| |||||||||||||| | |||| ||||||||||||||||||||  ||||||  |||||||||||||||||||||||||||||| | |||    
T  10927139 ttttattcattaaataatattttagagagtttt-ctcaatttctggtggattccggaaccct--tttcacaagtttgtcgcttgcaaacttgttcttttt 10927235  T
Q  297 caatctaggtttaacacttgctagcttacgcttctgactgcgtcag 342  Q
    || |||||||||| |  |||||||| | || |||  ||||||||||    
T  10927236 cagtctaggtttagcgtttgctagcctccgtttccaactgcgtcag 10927281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 198 - 341
Target Start/End: Complemental strand, 9195086 - 9194944
Alignment:
Q  198 ttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgtttctttc 297  Q
    ||||||||||| ||||||| |||||| | ||||| ||||||| |||||||||    |||||||||  |||| |||||||||||||||||||||||| |||    
T  9195086 ttttattcattcaataatactttagagagttttt-tcaatttttggtggattattgaaccctattaacacatgtttgtcgcttgcaaacttgtttcattc 9194988  T
Q  298 aatctaggtttaacacttgctagcttacgcttctgactgcgtca 341  Q
    ||||||||||||||  ||  || | | |||||||||||||||||    
T  9194987 aatctaggtttaacgtttaataacctgcgcttctgactgcgtca 9194944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 203 - 341
Target Start/End: Original strand, 10928239 - 10928377
Alignment:
Q  203 ttcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgtttc-tttcaatc 301  Q
    |||||| |||| ||||||||| | |||| |||||||| | ||||||||| ||||| |||||||||||||||||| ||| ||||||| | || ||| ||||    
T  10928239 ttcattcaatagtattttagagagtttt-ctcaatttatagtggattccgaaaccttattttcacaagtttgtcacttacaaacttatatctttttaatc 10928337  T
Q  302 taggtttaacacttgctagcttacgcttctgactgcgtca 341  Q
    |||||||| ||||||||||| ||||||||  |||||||||    
T  10928338 taggtttagcacttgctagcctacgcttcctactgcgtca 10928377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 236 - 331
Target Start/End: Original strand, 31913359 - 31913454
Alignment:
Q  236 atttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgtttctttcaatctaggtttaacacttgctagcttacgcttct 331  Q
    |||||||||||||| |  || |||||||| |||||||||||||||||||||||||||||||||| ||||||||| | ||||||||| || ||||||    
T  31913359 atttctggtggatttcggaaacctatttttacaagtttgtcgcttgcaaacttgtttctttcaacctaggtttagcgcttgctagcctatgcttct 31913454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 198 - 326
Target Start/End: Original strand, 43681404 - 43681535
Alignment:
Q  198 ttttattcattgaataatatttta-gataatttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttg--tttct 294  Q
    ||||||||||| |||||||||||| || || |||||| |||||||||| |||||   | | |||||||||||| |||||||||||||||||||  ||| |    
T  43681404 ttttattcattcaataatattttaagagaagttttcttaatttctggtagattctggatctctattttcacaaatttgtcgcttgcaaacttgttttttt 43681503  T
Q  295 ttcaatctaggtttaacacttgctagcttacg 326  Q
    ||||||||||||||| | ||||||||| ||||    
T  43681504 ttcaatctaggtttagcgcttgctagcatacg 43681535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 254 - 319
Target Start/End: Original strand, 8931220 - 8931285
Alignment:
Q  254 aaccctattttcacaagtttgtcgcttgcaaacttgtttctttcaatctaggtttaacacttgcta 319  Q
    |||||||||||||||||||| |||||||||||||||||| |||||||||||||||| | |||||||    
T  8931220 aaccctattttcacaagtttatcgcttgcaaacttgtttttttcaatctaggtttagcgcttgcta 8931285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 253 - 336
Target Start/End: Complemental strand, 28661158 - 28661074
Alignment:
Q  253 aaaccctattttcacaagtttgtcgcttgcaaacttgtttctt-tcaatctaggtttaacacttgctagcttacgcttctgactg 336  Q
    |||||||||||| ||| |||| ||||||||||||||||||||| ||||| |||||||| ||||||||||| |||||||| |||||    
T  28661158 aaaccctatttttacaggtttttcgcttgcaaacttgtttcttatcaatttaggtttagcacttgctagcctacgcttccgactg 28661074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 175 - 341
Target Start/End: Original strand, 239609 - 239775
Alignment:
Q  175 acagttgtaatttaagaggaaatttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttg 274  Q
    ||||||||| | ||| ||| || ||||||||||| ||||||||||||||    |||||| |||||| | ||||||||  ||||||||||||| || ||||    
T  239609 acagttgtagtctaaaaggtaacttttattcatttaataatattttaga-gggttttcttaatttcagttggattccggaaccctattttcataaatttg 239707  T
Q  275 tcgcttgcaaacttgtttc-tttcaatctaggtttaacacttgctagcttacgcttctgactgcgtca 341  Q
     ||||||| |||||||||| ||| ||| || ||||| | ||||||||| |||||||| || |||||||    
T  239708 acgcttgctaacttgtttctttttaatataagtttagcccttgctagcctacgcttccgaatgcgtca 239775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 227 - 305
Target Start/End: Complemental strand, 33152835 - 33152756
Alignment:
Q  227 tttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgtttc-tttcaatctagg 305  Q
    ||||||| |||||||||||||||||  ||||||||| ||  |||||||||||||||||||||||||| ||||||||||||    
T  33152835 tttttcttaatttctggtggattccggaaccctattgtcgtaagtttgtcgcttgcaaacttgtttcttttcaatctagg 33152756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 175 - 309
Target Start/End: Original strand, 21903674 - 21903807
Alignment:
Q  175 acagttgtaatttaagaggaaatttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttg 274  Q
    |||||||||  |||||||  || ||||| ||| | ||||||| |||||| || |||||||||||| | ||||||||| |||||||||||||||||| |||    
T  21903674 acagttgtagcttaagagacaaattttactcacttaataatagtttaga-aagttttctcaattttttgtggattccgaaaccctattttcacaag-ttg 21903771  T
Q  275 tcgcttgcaaacttgtttc-tttcaatctaggttta 309  Q
    |||| | ||||||| |||| |||||||||| |||||    
T  21903772 tcgcctacaaacttatttcttttcaatctaagttta 21903807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 259 - 341
Target Start/End: Original strand, 26981516 - 26981598
Alignment:
Q  259 tattttcacaagtttgtcgcttgcaaacttgtttctttcaatctaggtttaacacttgctagcttacgcttctgactgcgtca 341  Q
    |||||| |||||||| |||||||||||||||||||||||||||||| |||| | || | || | |||||||| ||||||||||    
T  26981516 tatttttacaagtttttcgcttgcaaacttgtttctttcaatctagatttagccctagataacctacgcttccgactgcgtca 26981598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 257 - 309
Target Start/End: Complemental strand, 13444074 - 13444022
Alignment:
Q  257 cctattttcacaagtttgtcgcttgcaaacttgtttctttcaatctaggttta 309  Q
    |||||||||||||||||||||||||||||||||||  |||| |||||||||||    
T  13444074 cctattttcacaagtttgtcgcttgcaaacttgttcttttctatctaggttta 13444022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 341
Target Start/End: Complemental strand, 8967949 - 8967804
Alignment:
Q  197 tttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgt--ttct 294  Q
    |||| ||||||| |||||||||| ||| | |||| | |||||| ||||||||||   ||||||||||||| | |||||||  ||||||||||||  || |    
T  8967949 ttttcattcattcaataatatttcagagagtttt-cacaatttttggtggattctggaaccctattttcataggtttgtcatttgcaaacttgttctttt 8967851  T
Q  295 ttcaatctaggtttaacacttgctagcttacgcttctgactgcgtca 341  Q
     || ||||||||||||| ||||| ||| | |||||| ||||||||||    
T  8967850 ctctatctaggtttaacgcttgcgagccttcgcttcggactgcgtca 8967804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 260 - 338
Target Start/End: Complemental strand, 28659650 - 28659569
Alignment:
Q  260 attttcacaagtttgtcgcttgcaaacttgtttcttt---caatctaggtttaacacttgctagcttacgcttctgactgcg 338  Q
    |||||||||||||| || ||||||||||||||| |||   |||| |||||||| || |||||||| ||||||||||||||||    
T  28659650 attttcacaagtttatcccttgcaaacttgttttttttatcaatataggtttagcatttgctagcctacgcttctgactgcg 28659569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 210 - 330
Target Start/End: Complemental strand, 40058236 - 40058114
Alignment:
Q  210 aataatattttagataatttttctcaatttctggtggattccaaaaccctatttt-cacaagtttgtcgcttgcaaacttgtttc-tttcaatctaggtt 307  Q
    ||||||||||||   | ||||||||||||  |||| |||||  |||||||||||| || ||||||||||||||||||||| |||| |||| || ||||||    
T  40058236 aataatattttatggagtttttctcaattgttggttgattctgaaaccctatttttcataagtttgtcgcttgcaaacttatttcttttctatttaggtt 40058137  T
Q  308 taacacttgctagcttacgcttc 330  Q
    ||   ||||||||| ||||||||    
T  40058136 tactgcttgctagcctacgcttc 40058114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 254 - 319
Target Start/End: Complemental strand, 50857533 - 50857468
Alignment:
Q  254 aaccctattttcacaagtttgtcgcttgcaaacttgtttctttcaatctaggtttaacacttgcta 319  Q
    ||||||||||||||||||||||||||| ||||||| ||  |||| ||||||||||| | |||||||    
T  50857533 aaccctattttcacaagtttgtcgcttacaaacttattcttttctatctaggtttagcgcttgcta 50857468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 198 - 330
Target Start/End: Original strand, 23987517 - 23987653
Alignment:
Q  198 ttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccct----attttcacaagtttgtcgcttgcaaacttgtt-t 292  Q
    ||||||||| | |||||||||||||| | || | ||||||||||||||||||||  |||| |    |||||||||||||||||| ||||||| ||||| |    
T  23987517 ttttattcaatcaataatattttagagagttat-ctcaatttctggtggattccggaaccttctatattttcacaagtttgtcgtttgcaaagttgttct 23987615  T
Q  293 ctttcaatctaggtttaacacttgctagcttacgcttc 330  Q
     |||| ||||||||| | | ||||||| | ||||||||    
T  23987616 ttttctatctaggttcagcgcttgctaccctacgcttc 23987653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 215 - 320
Target Start/End: Complemental strand, 36694281 - 36694176
Alignment:
Q  215 tattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgtttctttcaatctaggtttaacact 314  Q
    ||||||| |||| ||||||||||||||| ||||||||  ||||||||||||| || ||   || || | || |||| |||||||||||| ||||| | ||    
T  36694281 tattttatataagttttctcaatttctgatggattccgcaaccctattttcataaattcaccgtttacgaatttgtctctttcaatctaagtttagcgct 36694182  T
Q  315 tgctag 320  Q
    ||||||    
T  36694181 tgctag 36694176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 215 - 320
Target Start/End: Complemental strand, 36710382 - 36710277
Alignment:
Q  215 tattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgtttctttcaatctaggtttaacact 314  Q
    ||||||| |||| ||||||||||||||| ||||||||  ||||||||||||| || ||   || || | || |||| |||||||||||| ||||| | ||    
T  36710382 tattttatataagttttctcaatttctgatggattccgcaaccctattttcataaattcaccgtttacgaatttgtctctttcaatctaagtttagcgct 36710283  T
Q  315 tgctag 320  Q
    ||||||    
T  36710282 tgctag 36710277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 284
Target Start/End: Complemental strand, 8965890 - 8965834
Alignment:
Q  228 ttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaa 284  Q
    ||||||||||||||| |||||| || ||||||||||||| || ||| ||| ||||||    
T  8965890 ttttctcaatttctgatggatttcagaaccctattttcataattttttcgtttgcaa 8965834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 198 - 329
Target Start/End: Original strand, 26374845 - 26374975
Alignment:
Q  198 ttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgtttctttc 297  Q
    ||||||||||| ||||||| |||||| | |||| || ||||||||||||||| | |||||||||||| ||||||||||||||||| ||||||||  ||||    
T  26374845 ttttattcattcaataataatttagagagtttt-cttaatttctggtggatttcgaaaccctatttttacaagtttgtcgcttgcgaacttgttcttttc 26374943  T
Q  298 aatctaggtttaacacttgctagcttacgctt 329  Q
    |||||||| ||||| |||||||||||||||||    
T  26374944 aatctaggcttaacgcttgctagcttacgctt 26374975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 198 - 343
Target Start/End: Complemental strand, 2189865 - 2189720
Alignment:
Q  198 ttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgtttctttc 297  Q
    ||||||||| | ||||||| ||||||   ||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||    
T  2189865 ttttattcaatcaataatactttagagt-tttttctcattttttggtggattccaaaaccttattttcacaagtttgtcgcttgcaaacttgttcttttc 2189767  T
Q  298 aatctaggtttaacacttgctagcttacgcttctg-actgcgtcagt 343  Q
    |||| ||||||| | ||||||||| |||||||| | |||||||||||    
T  2189766 aatcgaggtttagcgcttgctagcctacgcttccgtactgcgtcagt 2189720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 187 - 337
Target Start/End: Original strand, 14130099 - 14130249
Alignment:
Q  187 taagaggaaatttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaac 286  Q
    ||||||| || ||||||||||| ||||||||||| || | |||| ||||||||||||||||||||  |||| ||||||||||| ||| ||||||||||||    
T  14130099 taagaggcaacttttattcattcaataatattttggagagtttt-ctcaatttctggtggattccggaaccttattttcacaaatttatcgcttgcaaac 14130197  T
Q  287 ttgtttc-tttcaatctaggtttaacacttgctagcttacgcttctgactgc 337  Q
    |||| || |||| |||||| |||||| ||||| ||| |||||||| ||||||    
T  14130198 ttgtctcttttcgatctagatttaacgcttgcaagcctacgcttccgactgc 14130249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 228 - 341
Target Start/End: Original strand, 20693773 - 20693887
Alignment:
Q  228 ttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgttt-ctttcaatctaggtttaacacttgctagcttacg 326  Q
    ||||||||||||||| ||||||||  |||| ||||||||||| ||||||||||||||||||||||  |||||||||||||||||| || |||||| ||||    
T  20693773 ttttctcaatttctgatggattccggaaccatattttcacaaatttgtcgcttgcaaacttgtttattttcaatctaggtttaaccctcgctagcctacg 20693872  T
Q  327 cttctgactgcgtca 341  Q
    ||||  |||||||||    
T  20693873 cttccaactgcgtca 20693887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 198 - 342
Target Start/End: Original strand, 24730977 - 24731122
Alignment:
Q  198 ttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgtttc-ttt 296  Q
    ||||||||||| |||||||||||||| | |||| |||||||| || |||||||| ||| ||||||||||||||||||| ||||||||||||||| | |||    
T  24730977 ttttattcattcaataatattttagagagtttt-ctcaatttttgatggattccgaaatcctattttcacaagtttgttgcttgcaaacttgttcctttt 24731075  T
Q  297 caatctaggtttaacacttgctagcttacgcttctg-actgcgtcag 342  Q
    |||||||  |||| | ||||||||| |||| ||||| ||||||||||    
T  24731076 caatctaaatttagcgcttgctagcctacggttctgtactgcgtcag 24731122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 197 - 342
Target Start/End: Original strand, 2687686 - 2687831
Alignment:
Q  197 tttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgtt-tctt 295  Q
    |||||||||||| |||||||||| | |  | |||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||| | ||    
T  2687686 tttttattcattcaataatatttca-aagagttttctcaatttcttgtggattctagaaccctattttcacaagtttgtcgcttgcaaacttgttctttt 2687784  T
Q  296 tcaatctaggtttaacacttgctagcttacgcttctgactgcgtcag 342  Q
    || ||||||||||| | || |||||  | |||||| |||||| ||||    
T  2687785 tctatctaggtttagcgctcgctagtcttcgcttccgactgcatcag 2687831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 228 - 328
Target Start/End: Original strand, 24731201 - 24731302
Alignment:
Q  228 ttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgtttc-tttcaatctaggtttaacacttgctagcttacg 326  Q
    ||||||||||||||| || ||||| |||| |||||||||||||||||| ||||||||||||||| | |||||||||||||||| | ||||||||| ||||    
T  24731201 ttttctcaatttctgatgaattccgaaactctattttcacaagtttgttgcttgcaaacttgttccttttcaatctaggtttagcgcttgctagcctacg 24731300  T
Q  327 ct 328  Q
    ||    
T  24731301 ct 24731302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 256 - 343
Target Start/End: Original strand, 42890394 - 42890481
Alignment:
Q  256 ccctattttcacaagtttgtcgcttgcaaacttgtttctttcaatctaggtttaacacttgctagcttacgcttctgactgcgtcagt 343  Q
    ||||||||||||||||||||||||||||||||||||  |||| ||||||||||| | ||||||||| ||||||||| | |||||||||    
T  42890394 ccctattttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcttgctagcctacgcttctaattgcgtcagt 42890481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 189 - 319
Target Start/End: Original strand, 16598184 - 16598315
Alignment:
Q  189 agaggaaatttttattcattgaataatattttagataatttttctcaattt-ctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaact 287  Q
    ||||| || ||||||||||| |||||||||||||| | |||| |||||||| |||||| |||    ||||||||||||||||||||||||| ||||||||    
T  16598184 agaggcaacttttattcattcaataatattttagagagtttt-ctcaatttactggtgtattttggaaccctattttcacaagtttgtcgcgtgcaaact 16598282  T
Q  288 tgtttctttc-aatctaggtttaacacttgcta 319  Q
    |||||||||| |||||| ||||| | |||||||    
T  16598283 tgtttctttctaatctaagtttagcgcttgcta 16598315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 231 - 319
Target Start/End: Original strand, 18468626 - 18468714
Alignment:
Q  231 tctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgtttctttcaatctaggtttaacacttgcta 319  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||  |||| | ||||||||| | |||||||    
T  18468626 tctcaatttctggtggattccggaaccctattttcacaagtttgtcgcttgcaagcttgttcttttctacctaggtttagcgcttgcta 18468714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 198 - 290
Target Start/End: Complemental strand, 24577672 - 24577581
Alignment:
Q  198 ttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgt 290  Q
    ||||||||||| |||||||||||||| | |||| |||||||||||||||||| | |||||| ||||||||| |||||||  ||||||||||||    
T  24577672 ttttattcattcaataatattttagagagtttt-ctcaatttctggtggattacgaaaccccattttcacatgtttgtcatttgcaaacttgt 24577581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 198 - 309
Target Start/End: Complemental strand, 24578921 - 24578810
Alignment:
Q  198 ttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgtttc-ttt 296  Q
    ||||||| ||| |||||||||||||| | |||| | |||||||| |||||||||| |||||||||||||||  |||  |||||||||||||||||| |||    
T  24578921 ttttatttattaaataatattttagagagtttt-cacaatttctagtggattccagaaccctattttcacagatttaccgcttgcaaacttgtttctttt 24578823  T
Q  297 caatctaggttta 309  Q
    | |||||||||||    
T  24578822 cgatctaggttta 24578810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 254 - 321
Target Start/End: Complemental strand, 42891753 - 42891686
Alignment:
Q  254 aaccctattttcacaagtttgtcgcttgcaaacttgtttctttcaatctaggtttaacacttgctagc 321  Q
    ||||||||||||||||||||||||||||||||||||||  |||| ||||||||||| | |||||||||    
T  42891753 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcttgctagc 42891686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 198 - 287
Target Start/End: Complemental strand, 2188487 - 2188397
Alignment:
Q  198 ttttattcattgaataatattttagataattttt-ctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaact 287  Q
    ||||||||| | |||||||||||||| | ||||| || ||||||||||||||| || ||||||||||| |||| |||||||||||||||||    
T  2188487 ttttattcaatcaataatattttagagagttttttcttaatttctggtggatttcagaaccctatttttacaattttgtcgcttgcaaact 2188397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 198 - 295
Target Start/End: Complemental strand, 2609639 - 2609543
Alignment:
Q  198 ttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgtttctt 295  Q
    ||||||||||| |||||||||| ||| |  |||  ||||||||||||| ||||   ||||||||||||||||||||||| ||||||||||||||||||    
T  2609639 ttttattcattcaataatatttcagagagcttta-tcaatttctggtgaattctgtaaccctattttcacaagtttgtcacttgcaaacttgtttctt 2609543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 254 - 309
Target Start/End: Complemental strand, 22926737 - 22926682
Alignment:
Q  254 aaccctattttcacaagtttgtcgcttgcaaacttgtttctttcaatctaggttta 309  Q
    ||||||||||||||||||||||||||||||||||||||  |||| |||||||||||    
T  22926737 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttctatctaggttta 22926682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 254 - 319
Target Start/End: Complemental strand, 22512135 - 22512070
Alignment:
Q  254 aaccctattttcacaagtttgtcgcttgcaaacttgtttctttcaatctaggtttaacacttgcta 319  Q
    ||||||||||||||||||||||||||||||||||||||  |||| | ||||||||| | |||||||    
T  22512135 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttctacctaggtttagcgcttgcta 22512070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 254 - 319
Target Start/End: Complemental strand, 22519435 - 22519370
Alignment:
Q  254 aaccctattttcacaagtttgtcgcttgcaaacttgtttctttcaatctaggtttaacacttgcta 319  Q
    ||||||||||||||||||||||||||||||||||||||  |||| | ||||||||| | |||||||    
T  22519435 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttctacctaggtttagcgcttgcta 22519370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 254 - 319
Target Start/End: Complemental strand, 22921939 - 22921874
Alignment:
Q  254 aaccctattttcacaagtttgtcgcttgcaaacttgtttctttcaatctaggtttaacacttgcta 319  Q
    ||||||||||||||||||||||||||||||||||| ||  |||| ||||||||||| | |||||||    
T  22921939 aaccctattttcacaagtttgtcgcttgcaaacttattcttttctatctaggtttagcgcttgcta 22921874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 254 - 319
Target Start/End: Original strand, 23570584 - 23570649
Alignment:
Q  254 aaccctattttcacaagtttgtcgcttgcaaacttgtttctttcaatctaggtttaacacttgcta 319  Q
    |||| |||||||||||||||||||||||||||||||||  |||| ||||||||||| | |||||||    
T  23570584 aaccttattttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcttgcta 23570649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 175 - 339
Target Start/End: Complemental strand, 31072294 - 31072124
Alignment:
Q  175 acagttgtaatttaagaggaaatttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttg 274  Q
    ||||||||| | ||| |||||| |||||||| || |||||| ||||||| | |||| |||| | || | |||||| || ||||||||||||| ||||||     
T  31072294 acagttgtagtctaaaaggaaaattttattccttcaataatgttttagagagtttt-ctcagtgtcggttggattgcagaaccctattttcataagttta 31072196  T
Q  275 tcgcttgcaaacttgtttctt-------tcaatctaggtttaacacttgctagcttacgcttctgactgcgt 339  Q
    || ||||||||||| ||| ||       |||||||||||||| | ||||||||| ||||||| |||||||||    
T  31072195 tctcttgcaaacttttttttttaatttctcaatctaggtttagcgcttgctagcctacgcttttgactgcgt 31072124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 228 - 296
Target Start/End: Original strand, 2689121 - 2689188
Alignment:
Q  228 ttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgtttcttt 296  Q
    ||||||||||||||| ||||| ||  |||||||||||||||  ||||||||||||||||||||||||||    
T  2689121 ttttctcaatttctg-tggatgccggaaccctattttcacagttttgtcgcttgcaaacttgtttcttt 2689188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 254 - 319
Target Start/End: Original strand, 6845336 - 6845401
Alignment:
Q  254 aaccctattttcacaagtttgtcgcttgcaaacttgtttctttcaatctaggtttaacacttgcta 319  Q
    |||||||||||||||||||| ||||||| |||||||||  |||| ||||||||||| | |||||||    
T  6845336 aaccctattttcacaagtttatcgcttgtaaacttgttcttttctatctaggtttagcgcttgcta 6845401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 187 - 259
Target Start/End: Original strand, 30440671 - 30440742
Alignment:
Q  187 taagaggaaatttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccct 259  Q
    ||||| |||| ||||||||||| ||||||||||||||  | |||||||||||||||||||||| || ||||||    
T  30440671 taagatgaaacttttattcattcaataatattttaga-gagttttctcaatttctggtggatttcagaaccct 30440742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 273
Target Start/End: Complemental strand, 10629262 - 10629188
Alignment:
Q  198 ttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagttt 273  Q
    |||||||| || |||||||||||||| |||||| |||||||| ||||| |||||| | ||||||| ||||||||||    
T  10629262 ttttattcgttaaataatattttagaaaatttt-ctcaatttttggtgaattccagagccctattctcacaagttt 10629188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 254 - 309
Target Start/End: Original strand, 23573583 - 23573638
Alignment:
Q  254 aaccctattttcacaagtttgtcgcttgcaaacttgtttctttcaatctaggttta 309  Q
    |||||||||||||||||||||||||||| |||||||||  |||| |||||| ||||    
T  23573583 aaccctattttcacaagtttgtcgcttgtaaacttgttattttctatctagcttta 23573638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 254 - 309
Target Start/End: Original strand, 37189866 - 37189921
Alignment:
Q  254 aaccctattttcacaagtttgtcgcttgcaaacttgtttctttcaatctaggttta 309  Q
    ||||||||||||||||||||||||||||||||||| ||  |||| |||||| ||||    
T  37189866 aaccctattttcacaagtttgtcgcttgcaaacttattcttttctatctagtttta 37189921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 198 - 271
Target Start/End: Original strand, 16598111 - 16598183
Alignment:
Q  198 ttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagt 271  Q
    ||||||||||| |||||||||||||| | |||| |||| ||||||||| ||| |  ||||||||||||||||||    
T  16598111 ttttattcattcaataatattttagagagtttt-ctcagtttctggtgtatttcggaaccctattttcacaagt 16598183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 254 - 319
Target Start/End: Complemental strand, 22520888 - 22520823
Alignment:
Q  254 aaccctattttcacaagtttgtcgcttgcaaacttgtttctttcaatctaggtttaacacttgcta 319  Q
    |||||||||||||||| ||||||||||||||||||| |  |||| | ||||||||| | |||||||    
T  22520888 aaccctattttcacaaatttgtcgcttgcaaacttgatcttttctacctaggtttagcgcttgcta 22520823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 199 - 296
Target Start/End: Complemental strand, 25479548 - 25479452
Alignment:
Q  199 tttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgtttcttt 296  Q
    |||||||||| ||||| |||| ||| | |||| ||||| ||||||||||||||  |||| |||||||| |  |||||| ||||||| |||||||||||    
T  25479548 tttattcattcaataaaatttcagagagtttt-ctcaaattctggtggattccggaaccttattttcaaagatttgtcacttgcaaccttgtttcttt 25479452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 250
Target Start/End: Original strand, 26377976 - 26378027
Alignment:
Q  198 ttttattcattgaataatattttagataatttttctcaatttctggtggattc 250  Q
    ||||||||||| ||||||||||||||  | |||||||||||||| ||||||||    
T  26377976 ttttattcattcaataatattttaga-gagttttctcaatttctagtggattc 26378027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 7e-31; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 198 - 321
Target Start/End: Original strand, 492511 - 492635
Alignment:
Q  198 ttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgtttc-ttt 296  Q
    ||||||||||| |||||||||| ||| | ||||||| |||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||| |||    
T  492511 ttttattcatttaataatatttcagagagtttttcttaatttctggttgattccgaaaccctatcttcacaagtttgtcgcttgcaaacttgtttctttt 492610  T
Q  297 caatctaggtttaacacttgctagc 321  Q
    |||||||  |||| | |||||||||    
T  492611 caatctaaatttagcgcttgctagc 492635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 202 - 330
Target Start/End: Original strand, 22440806 - 22440934
Alignment:
Q  202 attcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgtttctttcaatc 301  Q
    ||||||| ||||||||||||||||  |||||| ||||||| ||||||||   ||||||||| ||| ||||||||||||||| ||| ||||  |||| |||    
T  22440806 attcattcaataatattttagataggttttcttaatttctagtggattctggaaccctattatcataagtttgtcgcttgcgaacatgttcttttctatc 22440905  T
Q  302 taggtttaacacttgctagcttacgcttc 330  Q
    |||||||| ||||||||||| ||||||||    
T  22440906 taggtttagcacttgctagcctacgcttc 22440934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 201 - 341
Target Start/End: Original strand, 18252364 - 18252504
Alignment:
Q  201 tattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgtt-tctttcaa 299  Q
    |||||||| |||||||||||| | | |||| |||||||||| |||||||  | ||||||||||||||| |||||||||||||||||||||| | |||| |    
T  18252364 tattcattcaataatattttaaagagtttt-ctcaatttctagtggattatagaaccctattttcacaggtttgtcgcttgcaaacttgttctatttcta 18252462  T
Q  300 tctaggtttaacacttgctagcttacgcttctgactgcgtca 341  Q
    |||||||||||| ||||  ||| ||| |||| ||||||||||    
T  18252463 tctaggtttaacgcttgtaagcctacacttccgactgcgtca 18252504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 210 - 291
Target Start/End: Complemental strand, 19497437 - 19497356
Alignment:
Q  210 aataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgtt 291  Q
    |||||||||||||| | ||||||||||||| || |||||| |  ||||||||||||||||||||||||||||||||||||||    
T  19497437 aataatattttagagattttttctcaatttttgatggatttcggaaccctattttcacaagtttgtcgcttgcaaacttgtt 19497356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 210 - 341
Target Start/End: Original strand, 26140300 - 26140431
Alignment:
Q  210 aataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttg-tttctttcaatctaggttt 308  Q
    |||||||||||||| | |||| |||||||| ||||||||||   ||||||||||||| ||||||||||||||||| |||| ||||||||||||||| |||    
T  26140300 aataatattttagagagtttt-ctcaatttttggtggattcttgaaccctattttcataagtttgtcgcttgcaatcttgttttctttcaatctagattt 26140398  T
Q  309 aacacttgctagcttacgcttctgactgcgtca 341  Q
    | |  |||||| | || ||||| ||||||||||    
T  26140399 agcgtttgctaacctatgcttccgactgcgtca 26140431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 239 - 341
Target Start/End: Complemental strand, 8456483 - 8456380
Alignment:
Q  239 tctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgtttc-tttcaatctaggtttaacacttgctagcttacgcttctgactgc 337  Q
    ||||||||||| |  || |||||||| ||||||| ||||||||| |||||||||| |||||||||||||||| | ||||||| | |||||||| ||||||    
T  8456483 tctggtggatttcggaatcctatttttacaagttcgtcgcttgcgaacttgtttcttttcaatctaggtttagcgcttgctaccctacgcttccgactgc 8456384  T
Q  338 gtca 341  Q
    ||||    
T  8456383 gtca 8456380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 254 - 308
Target Start/End: Complemental strand, 21849054 - 21849000
Alignment:
Q  254 aaccctattttcacaagtttgtcgcttgcaaacttgtttctttcaatctaggttt 308  Q
    ||||||||||||||||||||||||||||||||||||||  |||| ||||||||||    
T  21849054 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttctatctaggttt 21849000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 254 - 309
Target Start/End: Complemental strand, 40778875 - 40778820
Alignment:
Q  254 aaccctattttcacaagtttgtcgcttgcaaacttgtttctttcaatctaggttta 309  Q
    ||||||||||| ||||||||||||||||||||||||||  |||| |||||||||||    
T  40778875 aaccctatttttacaagtttgtcgcttgcaaacttgttcttttctatctaggttta 40778820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 254 - 319
Target Start/End: Complemental strand, 9868494 - 9868428
Alignment:
Q  254 aaccctattttcacaagtttgtcgcttgcaaacttgtttc-tttcaatctaggtttaacacttgcta 319  Q
    |||||||||||||||||||||| ||||| ||||||||||| ||||||| ||| ||||||| ||||||    
T  9868494 aaccctattttcacaagtttgttgcttgtaaacttgtttcttttcaatatagatttaacatttgcta 9868428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 175 - 333
Target Start/End: Original strand, 49244 - 49401
Alignment:
Q  175 acagttgtaatttaagaggaaatttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttg 274  Q
    ||||||||| | ||||||| || ||||||||||| ||| |||||||||| | |||| || | ||| |||||||||    ||||||||||||| |||||||    
T  49244 acagttgtagtctaagaggtaacttttattcatttaattatattttagagagttttcctta-tttatggtggattttggaaccctattttcataagtttg 49342  T
Q  275 tcgcttgcaaacttgtttctttcaatctaggtttaacacttgctagcttacgcttctga 333  Q
    |||||||||||||||||  | |||||||||||| ||| ||| |||||||||||||||||    
T  49343 tcgcttgcaaacttgttcttctcaatctaggttcaacgctttctagcttacgcttctga 49401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 176 - 329
Target Start/End: Original strand, 37635 - 37786
Alignment:
Q  176 cagttgtaatttaagaggaaatttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttgt 275  Q
    |||||||| | ||||||| || | ||||||||| ||| |||||||||| | |||| || |||||||||| ||||    |||| |||||||| ||||||||    
T  37635 cagttgtagtctaagaggcaactgttattcatttaattatattttagagagttttcct-aatttctggtcgattttggaacc-tattttcataagtttgt 37732  T
Q  276 cgcttgcaaacttgtttctttcaatctaggtttaacacttgctagcttacgctt 329  Q
    ||||||||||||||||  |||||||||||||||| | ||| |||||||||||||    
T  37733 cgcttgcaaacttgttcttttcaatctaggtttagcgctttctagcttacgctt 37786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 228 - 332
Target Start/End: Original strand, 10629 - 10734
Alignment:
Q  228 ttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgt-ttctttcaatctaggtttaacacttgctagcttacg 326  Q
    |||||||||||| | |||| ||||| |||| |  ||||| ||||||||||  ||||||||||| || |||||||||||||||||  ||||||||| ||||    
T  10629 ttttctcaattttttgtggtttccagaacctttatttcataagtttgtcgaatgcaaacttgtcttttttcaatctaggtttaaagcttgctagcctacg 10728  T
Q  327 cttctg 332  Q
    ||||||    
T  10729 cttctg 10734  T

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Target: scaffold0251 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 193 - 331
Target Start/End: Original strand, 9642 - 9781
Alignment:
Q  193 gaaatttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagttt--gtcgcttgcaaacttgt 290  Q
    |||| ||||||||||| |||||||||| ||| | |||| |||||||||||||||||| |  |||||||||||||||||| |  |||||||| ||||||||    
T  9642 gaaacttttattcattcaataatatttcagagagtttt-ctcaatttctggtggatttcggaaccctattttcacaagtgttagtcgcttggaaacttgt 9740  T
Q  291 ttctttcaatctaggtttaacacttgctagcttacgcttct 331  Q
    |  |||||||||||||||| | ||||||||| |||||||||    
T  9741 tcttttcaatctaggtttaccgcttgctagcatacgcttct 9781  T

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Target: scaffold0090 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 199 - 309
Target Start/End: Complemental strand, 15207 - 15098
Alignment:
Q  199 tttattcattgaataatattttagataatttttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgtttctttca 298  Q
    |||||||||| ||||||||||||||  ||||| ||||||||||||||||||| | ||||||||||| ||||||| |||||||   ||||||| |||||||    
T  15207 tttattcattcaataatattttagaggatttt-ctcaatttctggtggattctagaaccctatttttacaagttcgtcgcttaggaacttgtctctttca 15109  T
Q  299 atctaggttta 309  Q
    |||||| ||||    
T  15108 atctagtttta 15098  T

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Target: scaffold0184 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 230 - 291
Target Start/End: Complemental strand, 14238 - 14177
Alignment:
Q  230 ttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgtt 291  Q
    |||||||||| || ||||||||||||| |||||||||||| ||| |||||||||||||||||    
T  14238 ttctcaatttttgatggattccaaaacactattttcacaaatttatcgcttgcaaacttgtt 14177  T

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Target: scaffold0078 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 230 - 291
Target Start/End: Original strand, 58606 - 58667
Alignment:
Q  230 ttctcaatttctggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgtt 291  Q
    |||||||||| || ||||||||||||| |||||||||||| ||| |||||||||||||||||    
T  58606 ttctcaatttttgatggattccaaaacactattttcacaaatttatcgcttgcaaacttgtt 58667  T

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Target: scaffold0531 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 259 - 332
Target Start/End: Complemental strand, 11672 - 11599
Alignment:
Q  259 tattttcacaagtttgtcgcttgcaaacttgtttctttcaatctaggtttaacacttgctagcttacgcttctg 332  Q
    |||||||||||||||||| ||||||||||| ||  ||| |||||||| ||||  ||||||||| ||||||||||    
T  11672 tattttcacaagtttgtcacttgcaaactttttctttttaatctaggattaatgcttgctagcctacgcttctg 11599  T

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Target: scaffold0110 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 318
Target Start/End: Complemental strand, 46877 - 46758
Alignment:
Q  197 tttttattcattgaataatattttagataatttttctcaatttctggtggattccaaaacccta-ttttcacaagtttgtcgcttgcaaacttgtttctt 295  Q
    |||||||||||| |||||||||  ||||  ||| ||||||||| |||||||||||  |||| || |||| | | ||||||||||||||||||||||  ||    
T  46877 tttttattcatt-aataatattcgagat--tttctctcaatttttggtggattccggaaccttaattttgataggtttgtcgcttgcaaacttgttcttt 46781  T
Q  296 tcaatctaggtttaacacttgct 318  Q
    || ||||||||||| | ||||||    
T  46780 tctatctaggtttagcgcttgct 46758  T

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Target: scaffold0110; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 291
Target Start/End: Complemental strand, 45351 - 45314
Alignment:
Q  254 aaccctattttcacaagtttgtcgcttgcaaacttgtt 291  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  45351 aaccttattttcataagtttgtcgcttgcaaacttgtt 45314  T

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Target: scaffold0236 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 258 - 309
Target Start/End: Original strand, 16402 - 16453
Alignment:
Q  258 ctattttcacaagtttgtcgcttgcaaacttgtttctttcaatctaggttta 309  Q
    |||||||| |||||||||||||||||||||  ||| ||| ||||||||||||    
T  16402 ctattttctcaagtttgtcgcttgcaaactcattttttttaatctaggttta 16453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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