View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3056-Insertion-30 (Length: 344)
Name: NF3056-Insertion-30
Description: NF3056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3056-Insertion-30 |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 57 - 341
Target Start/End: Original strand, 8348115 - 8348397
Alignment:
| Q |
57 |
caataataattgctgtcttttctctctgcctccatggccataaattctatggcttgttaataattgcttgatgcaatttctgagtttgattatgtttgtt |
156 |
Q |
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| T |
8348115 |
caataataattgttgtctt--ctctctgcctccatggccataaattctatggcttgttaataattgcttgatgcagtttctgagtttgattatgtttgtt |
8348212 |
T |
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| Q |
157 |
tgttttggatctttataaacacgattgattttcttttcctcatcttcaagaacaaagtcatcttcatcaattcaaaaaggggtaatacaacactgaatcg |
256 |
Q |
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| T |
8348213 |
tgttttggatctttataaacacgattgattttcttttcctcatcttcaagaacaaagtcatcttcatcaattcaaaaaggggtaatacaacactgaatcg |
8348312 |
T |
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| Q |
257 |
aaaaagcatggtaaaaaagagggatagtaatacaagagatgcaagtaattattagttaattttagctattcaaatcttgcccctt |
341 |
Q |
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| T |
8348313 |
aaaaagcatggtcaaaaagagggatagtaatacaagagatgcaagtaattattagttaattttagctattcaaatcttgcccctt |
8348397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Original strand, 8348424 - 8348457
Alignment:
| Q |
299 |
aagtaattattagttaattttagctattcaaatc |
332 |
Q |
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| T |
8348424 |
aagtaattattagttaattttaactattcaaatc |
8348457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 188 - 261
Target Start/End: Original strand, 33045268 - 33045342
Alignment:
| Q |
188 |
tcttttcctcatcttcaagaacaaagtcatcttcatcaattcaa-aaaggggtaatacaacactgaatcgaaaaa |
261 |
Q |
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| T |
33045268 |
tcttttcctaatctccaagaacaaagtcattttcatcaattcaagaagggggcaatagcacactgaatcgaaaaa |
33045342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 178
Target Start/End: Original strand, 24162677 - 24162710
Alignment:
| Q |
145 |
attatgtttgtttgttttggatctttataaacac |
178 |
Q |
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| T |
24162677 |
attatgtttgtttgttttggatctatataaacac |
24162710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 178
Target Start/End: Complemental strand, 24163380 - 24163347
Alignment:
| Q |
145 |
attatgtttgtttgttttggatctttataaacac |
178 |
Q |
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|||||||||||||||||||||||| ||||||||| |
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| T |
24163380 |
attatgtttgtttgttttggatctatataaacac |
24163347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 178
Target Start/End: Complemental strand, 55201632 - 55201599
Alignment:
| Q |
145 |
attatgtttgtttgttttggatctttataaacac |
178 |
Q |
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|||||||||||||||||||||||| ||||||||| |
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| T |
55201632 |
attatgtttgtttgttttggatctatataaacac |
55201599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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