View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3056-Insertion-34 (Length: 146)
Name: NF3056-Insertion-34
Description: NF3056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3056-Insertion-34 |
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| [»] chr4 (8 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 127; Significance: 6e-66; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 6e-66
Query Start/End: Original strand, 8 - 146
Target Start/End: Complemental strand, 26121458 - 26121320
Alignment:
| Q |
8 |
acaatgattgggctcagagaaagagaaggacgcttgatgaagaacaaccctcgttctctactcatatcaataatggttaccactgtaatcattggagttc |
107 |
Q |
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| T |
26121458 |
acaatgattgggctcagagaaagagaaggacgcttgatgaagaacaactctcattctctactcatatcaataatcgttaccactgtaatcattggagttc |
26121359 |
T |
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| Q |
108 |
ttattggatgcatcttacttttctattttcctaatgact |
146 |
Q |
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| T |
26121358 |
ttattggatgcatcttacttttctattttcctaatgact |
26121320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 1e-39
Query Start/End: Original strand, 8 - 146
Target Start/End: Complemental strand, 26111931 - 26111793
Alignment:
| Q |
8 |
acaatgattgggctcagagaaagagaaggacgcttgatgaagaacaaccctcgttctctactcatatcaataatggttaccactgtaatcattggagttc |
107 |
Q |
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| T |
26111931 |
acaatgattgagcgcagagaaagagaaggacctttgatgaagaacagccctcaatctctactcatatcaaggatcattaccactgtaatcattggagttc |
26111832 |
T |
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| Q |
108 |
ttattggatgcatcttacttttctattttcctaatgact |
146 |
Q |
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| T |
26111831 |
ttattggatgcatcatagttttcttttttcctaatgact |
26111793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 79; E-Value: 3e-37
Query Start/End: Original strand, 8 - 146
Target Start/End: Complemental strand, 26056357 - 26056219
Alignment:
| Q |
8 |
acaatgattgggctcagagaaagagaaggacgcttgatgaagaacaaccctcgttctctactcatatcaataatggttaccactgtaatcattggagttc |
107 |
Q |
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| T |
26056357 |
acaatgattgagcgcagagaaagagaaggacccttgatgaagaacagccctcaatctctactcatatcaaggatcattaccactgtaatcattggagttc |
26056258 |
T |
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| Q |
108 |
ttattggatgcatcttacttttctattttcctaatgact |
146 |
Q |
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||| |||||||||| || |||||| ||||||||| |||| |
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| T |
26056257 |
ttactggatgcatcatagttttcttttttcctaaagact |
26056219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 79; E-Value: 3e-37
Query Start/End: Original strand, 8 - 146
Target Start/End: Complemental strand, 26085594 - 26085456
Alignment:
| Q |
8 |
acaatgattgggctcagagaaagagaaggacgcttgatgaagaacaaccctcgttctctactcatatcaataatggttaccactgtaatcattggagttc |
107 |
Q |
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| T |
26085594 |
acaatgattgagcgcagagaaagagaaggacctttgatgaagaacagccctcaatctctactcatatcaaggatcattaccactgtaatcattggagttc |
26085495 |
T |
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| Q |
108 |
ttattggatgcatcttacttttctattttcctaatgact |
146 |
Q |
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| T |
26085494 |
ttgctggatgcatcatagttttctattttcctaatgact |
26085456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 75; E-Value: 7e-35
Query Start/End: Original strand, 8 - 146
Target Start/End: Complemental strand, 26068019 - 26067881
Alignment:
| Q |
8 |
acaatgattgggctcagagaaagagaaggacgcttgatgaagaacaaccctcgttctctactcatatcaataatggttaccactgtaatcattggagttc |
107 |
Q |
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|||||||||| || ||||||||||||||||| ||||||||||||| ||||| |||||||||||||||| || |||||||||||||||||||||||| |
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| T |
26068019 |
acaatgattgagcgcagagaaagagaaggacctttgatgaagaacagccctcaatctctactcatatcaaggatcattaccactgtaatcattggagttc |
26067920 |
T |
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| Q |
108 |
ttattggatgcatcttacttttctattttcctaatgact |
146 |
Q |
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||| |||||||||| || |||||| ||||||||| |||| |
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| T |
26067919 |
ttactggatgcatcatagttttcttttttcctaaagact |
26067881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 8 - 146
Target Start/End: Complemental strand, 26128885 - 26128747
Alignment:
| Q |
8 |
acaatgattgggctcagagaaagagaaggacgcttgatgaagaacaaccctcgttctctactcatatcaataatggttaccactgtaatcattggagttc |
107 |
Q |
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|||||||||| || ||||||||||||||||| ||||||||||||||||||| ||||||| |||||||| || |||||| |||||||||| | ||||| |
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| T |
26128885 |
acaatgattgagcacagagaaagagaaggacccttgatgaagaacaacccttattctctaagcatatcaaagattgttaccgctgtaatcatagtagttc |
26128786 |
T |
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| Q |
108 |
ttattggatgcatcttacttttctattttcctaatgact |
146 |
Q |
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||| |||||||||| || |||||| |||||||||||||| |
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| T |
26128785 |
ttactggatgcatcatagttttcttttttcctaatgact |
26128747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 8 - 143
Target Start/End: Complemental strand, 26038452 - 26038317
Alignment:
| Q |
8 |
acaatgattgggctcagagaaagagaaggacgcttgatgaagaacaaccctcgttctctactcatatcaataatggttaccactgtaatcattggagttc |
107 |
Q |
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||||||||||||| ||||||||||||||||| ||| ||| |||||||||| |||||||| || ||||| || ||||| ||||| | ||||| |||| |
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| T |
26038452 |
acaatgattgggcgcagagaaagagaaggacccttaatgcgaaacaaccctcattctctacgcaaatcaaggatcgttactgctgtagtaattggtgttc |
26038353 |
T |
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| Q |
108 |
ttattggatgcatcttacttttctattttcctaatg |
143 |
Q |
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| T |
26038352 |
ttattggatgcatcttagctttcttttttcctaatg |
26038317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 118
Target Start/End: Complemental strand, 26120932 - 26120823
Alignment:
| Q |
9 |
caatgattgggctcagagaaagagaaggacgcttgatgaagaacaaccctcgttctctactcatatcaataatggttaccactgtaatcattggagttct |
108 |
Q |
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|||||||||||| || ||||| |||||||| ||| ||| | ||||| ||| ||||||| || ||||| || | |||||||||| | || |||||||| |
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| T |
26120932 |
caatgattgggcgcaaagaaatagaaggacccttaatgcaaaacaatccttaatctctacgcaaatcaaggatcgctaccactgtagtaatcggagttct |
26120833 |
T |
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| Q |
109 |
tattggatgc |
118 |
Q |
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|||||||||| |
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| T |
26120832 |
tattggatgc |
26120823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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