View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3056-Insertion-4 (Length: 1112)
Name: NF3056-Insertion-4
Description: NF3056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3056-Insertion-4 |
 | |
|
| [»] scaffold0090 (1 HSPs) |
| | |
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Alignment Details
Target: chr3 (Bit Score: 969; Significance: 0; HSPs: 31)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 969; E-Value: 0
Query Start/End: Original strand, 8 - 1093
Target Start/End: Original strand, 20342589 - 20343680
Alignment:
| Q |
8 |
gcttcgcatagaatctaacagatttcactttcttaagttagaatgagaactacattttaagcttttagcaagagaaaaattgagatcaataaattgggtt |
107 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20342589 |
gcttcgcatagcatctaacagatttcactttcttaagttagcatgagaactacattttaagcttttagcaagagaaaaattgagatcaataaattgggtt |
20342688 |
T |
|
| Q |
108 |
ggtgtgaaaattcaaaccaaaaataaagaaatccaagcttctgttgggcatgaattcatagatcaacatcttttcatcttgttgaatagaacaaccaata |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
20342689 |
ggtgtgaaaattcaaaccaaaaataaagaaatccaagcttctgttgggcatgaattcatagatcaacatcttttcatcttgttgaatagaacaaccaaga |
20342788 |
T |
|
| Q |
208 |
agttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttgaactcctcaattccttgtcccgatgttttagaaagcctcttaacgg |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20342789 |
agttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttgaactcctcaattccttgtcccgatgttttagaaagcctcttaacgg |
20342888 |
T |
|
| Q |
308 |
cgatctcttggccatctaccattatgccctaggaatattttaggaggaaattatagtacttacttatagcacttggcaaaataaggggattaactaactt |
407 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20342889 |
cgatctcttggccatctatcattatgccctaggaatattttaggaggaaattatagtacttacttatagcacttggcaaaataaggggattaactaactt |
20342988 |
T |
|
| Q |
408 |
gttagccaagactttaccttgtacactggtccaaaaccaccttctcccaatttgtttctgatagagaagttatttgttgcattagtgatggttgaaaaat |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20342989 |
gttagccaagactttaccttgtacactggtccaaaaccaccttctcccaatttgtttctgatagagaagttatttgttgcattagtgatggttgaaaaat |
20343088 |
T |
|
| Q |
508 |
caaatattgtggccaagtcatcatcttcattctccttcttctgcttccagtgaaataacttttttatatggcctgaagtaaacaattaaagtaaatcata |
607 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
20343089 |
caaatattgtggccaagtcatcatcttcattctccttcttctgcttccagtgaaataacttttttatatggcctgaagt-aacaattaaagtaaatcata |
20343187 |
T |
|
| Q |
608 |
aataattaagaattatttatcataacttgtgcacttgtcttaccaagcttctttctatatgctgacgtgaccaatacgagaacggctagtcctataataa |
707 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20343188 |
aataattaagaattatttatcataacttgtgcacttgtcttaccaagcttctttctatatgctgacgtgaccaatacgagaacggctagtcctataataa |
20343287 |
T |
|
| Q |
708 |
atgcaataaccccggcaaaaatcccagaaagcttcaagttcctcttattctttttatgatctgagggttgaaataaatgtcagtcaacaagcaggtatag |
807 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20343288 |
atgcaataaccccggcaaaaatcccagaaagcttcaagttcctcttattctttttatgatctgagggttgaaataaatgtcagtcaacaagcaggtatag |
20343387 |
T |
|
| Q |
808 |
aagcttactcaaaataagaagaaattaattcatgaccaactgttcttagaaatatttcaggtacatacttacttaaaagtg-aaagagaatttattagtg |
906 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||| |
|
|
| T |
20343388 |
aagcttactcaaaataagaagaaattaattcatgaccaactgttcttagaaatatttcaggtaca----tactttaaagtgaaaagagaatttattagtg |
20343483 |
T |
|
| Q |
907 |
tcacatgatttcaactattcaacaggacttaatactatc-agataaatgctgaaatatatgaaatttgtgc-atatatctaactggaaagg-aaaagatg |
1003 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
20343484 |
tcacatgatttcaactattcaacaggacttaatactatcaagataaatgctgaaatatatgaaatttgtgcaatatatctaactggaaaggaaaaagatg |
20343583 |
T |
|
| Q |
1004 |
taatagg-aatgaaaata-caagttctgaagatgctag-cgtatat-aatgtcttgt-cttggtctcgatgttttctcatgtc--aaatattgtcaa |
1093 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
20343584 |
taataggaaatgaaaataccaagttctgaagatgctagccgtatataaatgtcttgtccttggtctcgatgttttctcatgtccaaaatattgtcaa |
20343680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 8 - 588
Target Start/End: Original strand, 5445270 - 5445843
Alignment:
| Q |
8 |
gcttcgcatagaatctaacagatttcactttcttaagttagaatgagaactacattttaagcttttagcaagagaaaaattgagatcaataaattgggtt |
107 |
Q |
| |
|
||||||| ||| ||||| |||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||| |||| |
|
|
| T |
5445270 |
gcttcgcgtagtatctagcagatttcacattcttaagttagcatgagaactacatttcg--------gcaagagaaaaattgagataaataaatttggtt |
5445361 |
T |
|
| Q |
108 |
ggtgtgaaaattcaaaccaaaaataaagaaatccaagcttctgttgggcatgaattcatagatcaacatcttttcatcttgttgaatagaacaaccaata |
207 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
5445362 |
ggtgtgaaagttcaaaccaaaaataaagaaatccaagcttctgttgggcatgaattcgtagatcaacatcttttcatcttgttgaatagaacaaccaaga |
5445461 |
T |
|
| Q |
208 |
agttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttgaactcctcaattccttgtcccgatgttttagaaagcctcttaacgg |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| | |
|
|
| T |
5445462 |
agttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttgaactcctcagttccttgtcctgatgttttagaaagcctcttaacag |
5445561 |
T |
|
| Q |
308 |
cgatctcttggccatctaccattatgccctaggaatattttaggaggaaattatagtacttacttatagcacttggcaaaataagggg----attaacta |
403 |
Q |
| |
|
| ||||||||||| |||||||||| ||||||| ||||||| |||||| ||||||||| | || || ||| |||||| ||| || ||||| |
|
|
| T |
5445562 |
caatctcttggccgtctaccattacgccctagtcatatttt---tggaaatgttagtacttagagaaagtacatggtgaaataacgggataaataaacta |
5445658 |
T |
|
| Q |
404 |
acttgttagccaagactttaccttgtacactggtccaaaaccaccttctcccaatttgtttctgatagagaagttatttgttgcattagtgatggttgaa |
503 |
Q |
| |
|
|| || || |||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||| |
|
|
| T |
5445659 |
acatgatatccaagactataccttgtacactggtccaaaaccaccttctcccaacttgtttctgacagagaagttatttgttgcattagtgatggtcgaa |
5445758 |
T |
|
| Q |
504 |
aaatcaaatattgtggccaagtcatcatcttcattctccttcttctgcttccagtgaaataacttttttatatggcctgaagtaa |
588 |
Q |
| |
|
|||||||| ||||| ||||| ||| ||||||| ||||||||||| ||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
5445759 |
aaatcaaagattgtagccaattcaccatcttccttctccttcttgtgcttccagagaaataacttttttatatgccctgaagtaa |
5445843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 20 - 588
Target Start/End: Original strand, 5453865 - 5454426
Alignment:
| Q |
20 |
atctaacagatttcactttcttaagttagaatgagaactacattttaagcttttagcaagagaaaaattgagatcaataaattgggttggtgtgaaaatt |
119 |
Q |
| |
|
||||| |||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||| || |
|
|
| T |
5453865 |
atctagcagatttcacattcttaagttagcatgagaactacatttcg--------gcaagagaaaaattgagataaataaatttggttggtgtgaaagtt |
5453956 |
T |
|
| Q |
120 |
caaaccaaaaataaagaaatccaagcttctgttgggcatgaattcatagatcaacatcttttcatcttgttgaatagaacaaccaataagttttacaaga |
219 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
5453957 |
caaaccaaaaataaagcaatccaagcttctgttgggcatgaattcgtagatcaacaacttttcatcttgttgaatagaacaaccaagaagttttacaaga |
5454056 |
T |
|
| Q |
220 |
ttacggtgttgaagtgttgccatcaactttacttcatttttgaactcctcaattccttgtcccgatgttttagaaagcctcttaacggcgatctcttggc |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
5454057 |
ttacggtgttgaagtgttgccatcaactttacttcatttttgaactcctcagttccttgtcccgatgttttagaaagcctcttaacagcaatctcttggc |
5454156 |
T |
|
| Q |
320 |
catctaccattatgccctaggaatattttaggaggaaattatagtacttacttatagcacttggcaaaataagggg----attaactaacttgttagcca |
415 |
Q |
| |
|
| ||||||| || | ||||| ||||||| ||||||| ||||||||| | || || ||| |||||| ||| || ||||||| || || ||| |
|
|
| T |
5454157 |
cgtctaccagtacggcctagtcatatttt---tggaaattttagtacttagagaaagtacatggtgaaataacgggataaataaactaacatgatatcca |
5454253 |
T |
|
| Q |
416 |
agactttaccttgtacactggtccaaaaccaccttctcccaatttgtttctgatagagaagttatttgttgcattagtgatggttgaaaaatcaaatatt |
515 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
5454254 |
agactataccttgtacactggtccaaaaccaccttctcccaacttgtttctgacagagaagttatttgttgcattagtgatggtcgaaaaatcaaatatt |
5454353 |
T |
|
| Q |
516 |
gtggccaagtcatcatcttcattctccttcttctgcttccagtgaaataacttttttatatggcctgaagtaa |
588 |
Q |
| |
|
|| ||||| ||| ||||||| ||||||||||| ||||||||| |||||||||| ||||||| |||||||||| |
|
|
| T |
5454354 |
gtagccaattcaccatcttccttctccttcttgtgcttccagagaaataacttctttatataccctgaagtaa |
5454426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 94 - 588
Target Start/End: Complemental strand, 5850010 - 5849523
Alignment:
| Q |
94 |
caataaattgggttggtgtgaaaattcaaaccaaaaataaagaaatccaagcttctgttgggcatgaattcatagatcaacatcttttcatcttgttgaa |
193 |
Q |
| |
|
||||||||| |||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
5850010 |
caataaattaggttagtgtgaaagttcaaaccaaaaataaagtaatccaagcttctgttgggcatgaattcatagatcaacaacttttcatcttgttgaa |
5849911 |
T |
|
| Q |
194 |
tagaacaaccaataagttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttgaactcctcaattccttgtcccgatgttttaga |
293 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| | |
|
|
| T |
5849910 |
tagaacaaccaagaagttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttgaactcctcaactccttgtcccgatgtattaca |
5849811 |
T |
|
| Q |
294 |
aagcctcttaacggcgatctcttggccatctaccattatgccctaggaatattttaggaggaaattatagtacttacttatagcacttggcaaaataagg |
393 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||| ||||||| ||| ||| | ||||| |||||||||| | ||| || ||||||| |
|
|
| T |
5849810 |
aagcctcttaacagcaatctcttggccatctaccattaagccctagtaatgttt---ctgaaaattttagtacttacct----tactcggtgaaataaga |
5849718 |
T |
|
| Q |
394 |
ggattaactaacttgttagccaagactttaccttgtacactggtccaaaaccaccttctcccaatttgtttctgatagagaagttatttgttgcattagt |
493 |
Q |
| |
|
||| || ||||||| | | || || |||||||||||||||||||||||||||||||||| || || ||| | ||||||||| ||||||||||||||| |
|
|
| T |
5849717 |
ggagaaattaacttggtgactaaaacattaccttgtacactggtccaaaaccaccttctcctaacttatttttattagagaagtgatttgttgcattagt |
5849618 |
T |
|
| Q |
494 |
gatggttgaaaaatcaaatattgtggccaagtcatcatcttcattctccttcttctgcttccagtgaaataacttttttatatggcctgaagtaa |
588 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||| ||||| | ||||| || || ||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
5849617 |
gatggtggaaaaatcaaatattgtagccaagtcaccatctgccttctcttttttatgcttccgatgaaataacttttttatataacctgaagtaa |
5849523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 105 - 588
Target Start/End: Original strand, 5489135 - 5489615
Alignment:
| Q |
105 |
gttggtgtgaaaattcaaaccaaaaataaagaaatccaagcttctgttgggcatgaattcatagatcaacatcttttcatcttgttgaatagaacaacca |
204 |
Q |
| |
|
||||||| |||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||| |||||| |||||||||||||| |
|
|
| T |
5489135 |
gttggtgagaaagttcaaaccaaaaataaagtaatccaagcttctgttggccatgaattcatagatcaacaacttttcttcttgtcgaatagaacaacca |
5489234 |
T |
|
| Q |
205 |
ataagttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttgaactcctcaattccttgtcccgatgttttagaaagcctcttaa |
304 |
Q |
| |
|
| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
5489235 |
agaagttttacaagattacggtgttgaagcgttgccatcaagtttacttcatttttgaactcctcggttccttgtgccgatgttttagaaagcctcttaa |
5489334 |
T |
|
| Q |
305 |
cggcgatctcttggccatctaccattatgccctaggaatattttaggaggaaattatagtacttacttatagcacttggcaaaataa----ggggattaa |
400 |
Q |
| |
|
| || ||||||||||| || ||||||| ||||||| |||||||| | ||||| ||| |||||| || || ||| |||||| ||| || |
|
|
| T |
5489335 |
cagcaatctcttggccgtcaaccattacgccctagtaatatttt---tgaaaattttag----tacttagagtacatggtgaaataactacatagataaa |
5489427 |
T |
|
| Q |
401 |
ctaacttgttagccaagactttaccttgtacactggtccaaaaccaccttctcccaatttgtttctgatagagaagttatttgttgcattagtgatggtt |
500 |
Q |
| |
|
||||| || || | |||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
5489428 |
ctaacatgatatcgaagactataccttgtacactgctccaaaaccaccttctcccaacttgtttctgatagagaaattatttgttgcattagtgatggtt |
5489527 |
T |
|
| Q |
501 |
gaaaaatcaaatattgtggccaagtcatcatcttcattctccttcttctgcttccagtgaaataacttttttatatggcctgaagtaa |
588 |
Q |
| |
|
||||||||||||||||| || || ||| ||| ||| ||||||||||| ||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
5489528 |
gaaaaatcaaatattgttgcgaaatcaccatattccttctccttcttgtgcttccagagaaataacttttttatataccctgaagtaa |
5489615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 95 - 576
Target Start/End: Complemental strand, 5803582 - 5803108
Alignment:
| Q |
95 |
aataaattgggttggtgtgaaaattcaaaccaaaaataaagaaatccaagcttctgttgggcatgaattcatagatcaacatcttttcatcttgttgaat |
194 |
Q |
| |
|
|||||| | ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
5803582 |
aataaaattggttggtgtgaaagttcaaaccaaaaataaagtaatccaagcttctgttgggcatgaattcatagatcaacaacttttcatcttgttgaat |
5803483 |
T |
|
| Q |
195 |
agaacaaccaataagttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttgaactcctcaattccttgtcccgatgttttagaa |
294 |
Q |
| |
|
|||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
5803482 |
agaacagccaagaagttttactagattacggtgttgaagtgttgccatcaactttacttcatttttgaactcctcggatccttgtcccgatgttttagaa |
5803383 |
T |
|
| Q |
295 |
agcctcttaacggcgatctcttggccatctaccattatgccctaggaatattttaggaggaaattatagtacttacttatagcacttggcaaaataaggg |
394 |
Q |
| |
|
||||||||||| || |||||||| ||||||||||||| ||||||| ||| ||| | ||||| ||| ||||||||| |||| | |||||| | |
|
|
| T |
5803382 |
agcctcttaacagcaatctcttgcccatctaccattaagccctagtaatgttt---ctgaaaattttag----tacttataggacttagtgaaataaaag |
5803290 |
T |
|
| Q |
395 |
gattaactaacttgttagccaagactttaccttgtacactggtccaaaaccaccttctcccaatttgtttctgatagagaagttatttgttgcattagtg |
494 |
Q |
| |
|
||| || ||||||| || | ||||| |||||||||||||||||||||||||||||||||| || || ||| | |||||||||||||||||||||| || |
|
|
| T |
5803289 |
gataaattaacttggtaacgaagacattaccttgtacactggtccaaaaccaccttctcctaacttatttgtatcagagaagttatttgttgcattattg |
5803190 |
T |
|
| Q |
495 |
atggttgaaaaatcaaatattgtggccaagtcatcatcttcattctccttcttctgcttccagtgaaataacttttttatat |
576 |
Q |
| |
|
||||| ||||||||||||||||| ||||||| |||||| ||||||||| | | |||||| | || ||||||||||||| |
|
|
| T |
5803189 |
atggtggaaaaatcaaatattgttgccaagttggtatcttccttctccttcctgtccttccaacggaacaacttttttatat |
5803108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 105 - 588
Target Start/End: Original strand, 5501984 - 5502464
Alignment:
| Q |
105 |
gttggtgtgaaaattcaaaccaaaaataaagaaatccaagcttctgttgggcatgaattcatagatcaacatcttttcatcttgttgaatagaacaacca |
204 |
Q |
| |
|
||||||| |||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
5501984 |
gttggtgagaaagttcaaaccaaaaataaagtaatccaagcttctgttggccatgaattcatagatcaacaacttttcatcttgttgaatagaacaacca |
5502083 |
T |
|
| Q |
205 |
ataagttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttgaactcctcaattccttgtcccgatgttttagaaagcctcttaa |
304 |
Q |
| |
|
| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||| |
|
|
| T |
5502084 |
agaagtttaacaagattacggtgttgaagtgttgccatcaagtttacttcatttttgaactcctcggttccttgtgccgatgttttagaaagccttttaa |
5502183 |
T |
|
| Q |
305 |
cggcgatctcttggccatctaccattatgccctaggaatattttaggaggaaattatagtacttacttatagcacttggcaaaataa----ggggattaa |
400 |
Q |
| |
|
| || ||||||||||| |||||||||| |||| | |||||||| ||||| ||| |||||| || || ||| |||||| ||| || |
|
|
| T |
5502184 |
cagcaatctcttggccgtctaccattacaccctggtaatatttt---ttaaaattttag----tacttagagtacatggtgaaataactatatagataaa |
5502276 |
T |
|
| Q |
401 |
ctaacttgttagccaagactttaccttgtacactggtccaaaaccaccttctcccaatttgtttctgatagagaagttatttgttgcattagtgatggtt |
500 |
Q |
| |
|
||||| || || | |||||| |||||||||||||| ||||||||||||||||||||| ||| || ||| |||||| |||||||||||| ||||||||||| |
|
|
| T |
5502277 |
ctaacatgatatcgaagactataccttgtacactgctccaaaaccaccttctcccaacttgcttttgacagagaaattatttgttgcaatagtgatggtt |
5502376 |
T |
|
| Q |
501 |
gaaaaatcaaatattgtggccaagtcatcatcttcattctccttcttctgcttccagtgaaataacttttttatatggcctgaagtaa |
588 |
Q |
| |
|
||||||||||||||||| ||||| ||| || ||| ||||||||||| ||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
5502377 |
gaaaaatcaaatattgttgccaaatcacaatattccttctccttcttgtgcttccagagaaataacttttttatataccctgaagtaa |
5502464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 99 - 540
Target Start/End: Original strand, 5524846 - 5525280
Alignment:
| Q |
99 |
aattgggttggtgtgaaaattcaaaccaaaaataaagaaatccaagcttctgttgggcatgaattcatagatcaacatcttttcatcttgttgaatagaa |
198 |
Q |
| |
|
|||| |||||||| |||| |||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||| ||||||||||||| |||||||| |
|
|
| T |
5524846 |
aatttggttggtgagaaagttcaaaccaaaaataaagtaatccaagcttctattgggcatgaattcgtagatcaacaacttttcatcttgtcgaatagaa |
5524945 |
T |
|
| Q |
199 |
caaccaataagttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttgaactcctcaattccttgtcccgatgttttagaaagcc |
298 |
Q |
| |
|
|| || | ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||| |||| |
|
|
| T |
5524946 |
cagccgagaagttttactagattacggtgttgaagtgttgccatcatctttacttcatttttgaactcctcggatccttgtatcgatgttttagctagcc |
5525045 |
T |
|
| Q |
299 |
tcttaacggcgatctcttggccatctaccattatgccctaggaatattttaggaggaaattatagtacttacttatagcacttggcaaaataaggggatt |
398 |
Q |
| |
|
||||||| || ||||||||||||||||||||||| |||||| |||||||| ||||||| ||| |||| | || |||||| |||||| ||||| |
|
|
| T |
5525046 |
tcttaacagcaatctcttggccatctaccattataccctagtaatatttt---tggaaattttag----tactgaaagaacttggtgaaataacgggata |
5525138 |
T |
|
| Q |
399 |
aactaacttgttagccaagactttaccttgtacactggtccaaaaccaccttctcccaatttgtttctgatagagaagttatttgttgcattagtgatgg |
498 |
Q |
| |
|
| |||||| || |||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||| |||||||||||| ||||||| |
|
|
| T |
5525139 |
gataaacttggtaaccaagactttaccttgtacactggtccaaaaccaccttctcctaacttgtttctgttagagaagtgatttgttgcattggtgatgg |
5525238 |
T |
|
| Q |
499 |
ttgaaaaatcaaatattgtggccaagtcatcatcttcattct |
540 |
Q |
| |
|
| ||||||||||||||||| | ||||||| |||||| |||| |
|
|
| T |
5525239 |
tcgaaaaatcaaatattgttgacaagtcactatcttccttct |
5525280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 182; E-Value: 8e-98
Query Start/End: Original strand, 95 - 348
Target Start/End: Original strand, 5483677 - 5483930
Alignment:
| Q |
95 |
aataaattgggttggtgtgaaaattcaaaccaaaaataaagaaatccaagcttctgttgggcatgaattcatagatcaacatcttttcatcttgttgaat |
194 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
5483677 |
aataaatttggttggtgtgaaagttcaaaccaaaaataaagttatccaagcttctgttgggcatgaattcgtagatcaacaacttttcatcttgttgaat |
5483776 |
T |
|
| Q |
195 |
agaacaaccaataagttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttgaactcctcaattccttgtcccgatgttttagaa |
294 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
5483777 |
agaacaaccaagaagttttactagattacggtgttgaagtgttgccatcatctttacttcatttttgaactcctcggatccttgtctcgatgttttagaa |
5483876 |
T |
|
| Q |
295 |
agcctcttaacggcgatctcttggccatctaccattatgccctaggaatatttt |
348 |
Q |
| |
|
||||||||||| || |||||||||||||||| |||||| |||||| |||||||| |
|
|
| T |
5483877 |
agcctcttaacagcaatctcttggccatctagcattataccctagtaatatttt |
5483930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 175; E-Value: 1e-93
Query Start/End: Original strand, 70 - 324
Target Start/End: Complemental strand, 5829285 - 5829031
Alignment:
| Q |
70 |
ttttagcaagagaaaaattgagatcaataaattgggttggtgtgaaaattcaaaccaaaaataaagaaatccaagcttctgttgggcatgaattcataga |
169 |
Q |
| |
|
|||| |||| |||||||||||||| | || ||| ||| ||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||| |||| |
|
|
| T |
5829285 |
ttttggcaatagaaaaattgagatgagtatatttggtaggtgtgaaagttcaaaccaaaaataaagtaatccaagcttctgtttggcatgaattcgtaga |
5829186 |
T |
|
| Q |
170 |
tcaacatcttttcatcttgttgaatagaacaaccaataagttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttgaactcctc |
269 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5829185 |
tcaacaacttttcatcttgttgaatagaacaaccaaaaagttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttgaattcctc |
5829086 |
T |
|
| Q |
270 |
aattccttgtcccgatgttttagaaagcctcttaacggcgatctcttggccatct |
324 |
Q |
| |
|
| |||||||||| ||||||||||| ||||||||||| || |||||||| |||||| |
|
|
| T |
5829085 |
agttccttgtcctgatgttttagatagcctcttaacagcaatctcttgtccatct |
5829031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 164; E-Value: 4e-87
Query Start/End: Original strand, 154 - 526
Target Start/End: Complemental strand, 5855117 - 5854752
Alignment:
| Q |
154 |
ggcatgaattcatagatcaacatcttttcatcttgttgaatagaacaaccaataagttttacaagattacggtgttgaagtgttgccatcaactttactt |
253 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||| |||||||||||||||| ||||||||||||||| | ||| |||||||||||||||||||| |||| |
|
|
| T |
5855117 |
ggcatgaattggtagatcaacaacttttcatcttggtgaatagaacaaccaagaagttttacaagatttctgtgctgaagtgttgccatcaacttcactt |
5855018 |
T |
|
| Q |
254 |
catttttgaactcctcaattccttgtcccgatgttttagaaagcctcttaacggcgatctcttggccatctaccattatgccctaggaatat-tttagga |
352 |
Q |
| |
|
|||||||||||||||| |||||||||| || |||||||| ||||||||||| || |||||| ||||||||| ||||| ||||||| ||||| |||| |
|
|
| T |
5855017 |
catttttgaactcctcggttccttgtcctgaggttttagagagcctcttaacagcaatctctcggccatctaacattacgccctagtaatatattta--- |
5854921 |
T |
|
| Q |
353 |
ggaaattatagtacttacttatagcacttggcaaaataaggggattaactaacttgttagccaagactttaccttgtacactggtccaaaaccaccttct |
452 |
Q |
| |
|
|||||| || ||||||||| |||| |||||||||||| || ||||||| || ||||||| ||||||||| || |||||||||||||||||| |
|
|
| T |
5854920 |
-gaaatt----taagtacttatagtactttctgaaataaggggatgaattaacttggtaaccaagacaataccttgtataccggtccaaaaccaccttct |
5854826 |
T |
|
| Q |
453 |
cccaatttgtttctgatagagaagttatttgttgcattagtgatggttgaaaaatcaaatattgtggccaagtc |
526 |
Q |
| |
|
|||| |||||||||| | ||||||||||||| |||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
5854825 |
cccagcttgtttctgacatagaagttatttgtcgcattagtgatggtcgaaaaatcaaatattgttgccaagtc |
5854752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 646 - 807
Target Start/End: Original strand, 5502593 - 5502754
Alignment:
| Q |
646 |
cttaccaagcttctttctatatgctgacgtgaccaatacgagaacggctagtcctataataaatgcaataaccccggcaaaaatcccagaaagcttcaag |
745 |
Q |
| |
|
|||||||||||||||||||||| |||| |||| |||||||||||||| |||||||||||| ||||||| ||| || |||| | |||||| ||||||||| |
|
|
| T |
5502593 |
cttaccaagcttctttctatatactgatgtgatcaatacgagaacggttagtcctataatgaatgcaacaactcctgcaagagtcccagcaagcttcaat |
5502692 |
T |
|
| Q |
746 |
ttcctcttattctttttatgatctgagggttgaaataaatgtcagtcaacaagcaggtatag |
807 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
5502693 |
ttccgcttattctttttatgatctgagggttgaaattaatgtcagtcaacaagaaggtatag |
5502754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 98; E-Value: 1e-47
Query Start/End: Original strand, 646 - 799
Target Start/End: Complemental strand, 5854566 - 5854413
Alignment:
| Q |
646 |
cttaccaagcttctttctatatgctgacgtgaccaatacgagaacggctagtcctataataaatgcaataaccccggcaaaaatcccagaaagcttcaag |
745 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||||||| |||||| ||||||||||||||||| |||||| || |||| | |||||| | |||||||| |
|
|
| T |
5854566 |
cttaccaagcttctttttatatgctgatgtgaccaatacaagaacgattagtcctataataaatgtaataactcctgcaacagtcccagcatgcttcaag |
5854467 |
T |
|
| Q |
746 |
ttcctcttattctttttatgatctgagggttgaaataaatgtcagtcaacaagc |
799 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
5854466 |
ttcctcttattctttttatgatctgaggattgaaataaatgttagtcaacaagc |
5854413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 95; E-Value: 7e-46
Query Start/End: Original strand, 646 - 816
Target Start/End: Original strand, 5445991 - 5446161
Alignment:
| Q |
646 |
cttaccaagcttctttctatatgctgacgtgaccaatacgagaacggctagtcctataataaatgcaataaccccggcaaaaatcccagaaagcttcaag |
745 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||| |||||| |||||||||||| ||||||| ||| || |||| | |||||| ||||||||| |
|
|
| T |
5445991 |
cttaccaagcttctttctatacactgatgtgaccaatacaagaacgtttagtcctataatgaatgcaacaactcctgcaagagtcccagcaagcttcaat |
5446090 |
T |
|
| Q |
746 |
ttcctcttattctttttatgatctgagggttgaaataaatgtcagtcaacaagcaggtatagaagcttact |
816 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||| |
|
|
| T |
5446091 |
ttctgcttattctttttatgatctgagggttgaagttaatgtcagtcaacaagctggtatagaagcttact |
5446161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 95; E-Value: 7e-46
Query Start/End: Original strand, 596 - 810
Target Start/End: Original strand, 5489718 - 5489932
Alignment:
| Q |
596 |
aagtaaatcataaataattaagaattatttatcataacttgtgcacttgtcttaccaagcttctttctatatgctgacgtgaccaatacgagaacggcta |
695 |
Q |
| |
|
||||| |||||||||| || ||| ||| || |||| | || | |||||| ||||||||||||||||||||||| ||| |||| ||| ||||||||| || |
|
|
| T |
5489718 |
aagtatatcataaatatttgagatttacttgtcatgattttttcacttggcttaccaagcttctttctatatgttgatgtgatcaaaacgagaacgctta |
5489817 |
T |
|
| Q |
696 |
gtcctataataaatgcaataaccccggcaaaaatcccagaaagcttcaagttcctcttattctttttatgatctgagggttgaaataaatgtcagtcaac |
795 |
Q |
| |
|
|| ||||||| ||||||||||| || |||| | |||||| ||||||||| |||| |||||||| |||||||||||||||||||| | ||||||||||||| |
|
|
| T |
5489818 |
gtactataatgaatgcaataactcctgcaagagtcccagcaagcttcaatttccgcttattctctttatgatctgagggttgaagttaatgtcagtcaac |
5489917 |
T |
|
| Q |
796 |
aagcaggtatagaag |
810 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
5489918 |
aagaaggtatagaag |
5489932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 599 - 816
Target Start/End: Complemental strand, 5849418 - 5849201
Alignment:
| Q |
599 |
taaatcataaataattaagaattatttatcataacttgtgcacttgtcttaccaagcttctttctatatgctgacgtgaccaatacgagaacggctagtc |
698 |
Q |
| |
|
||||||| ||||| || | | ||| |||||||||||| | ||| || |||||||| |||| |||||||||||| || |||||||| ||||||| ||||| |
|
|
| T |
5849418 |
taaatcaaaaatatttgacatttaattatcataactttttcacctggcttaccaattttctctctatatgctgatgtaaccaatacaagaacggttagtc |
5849319 |
T |
|
| Q |
699 |
ctataataaatgcaataaccccggcaaaaatcccagaaagcttcaagttcctcttattctttttatgatctgagggttgaaataaatgtcagtcaacaag |
798 |
Q |
| |
|
|||| || || ||||| || || |||| | ||| || | |||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
5849318 |
ctattatgaacgcaatgactcctgcaacagtccaagcacgcttcaagtttcgcttattctttttatgatctgagggttgaaataaatgtcagccaacaag |
5849219 |
T |
|
| Q |
799 |
caggtatagaagcttact |
816 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
5849218 |
aaggtatagaagcttact |
5849201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 86; E-Value: 2e-40
Query Start/End: Original strand, 646 - 826
Target Start/End: Original strand, 5454573 - 5454754
Alignment:
| Q |
646 |
cttaccaagcttctttctatatgctgacgtgaccaatacgagaacggctagtcctataataaatgcaataaccccggcaaaaatcccagaaagcttcaag |
745 |
Q |
| |
|
|||||||| ||||||| |||||||||| ||||||||||| ||||| |||||||||| | ||||||||||| || |||| | |||||| ||||||||| |
|
|
| T |
5454573 |
cttaccaatcttctttttatatgctgatgtgaccaatacaagaactattagtcctatagtgaatgcaataactcctgcaagagtcccagcaagcttcaac |
5454672 |
T |
|
| Q |
746 |
ttcctcttattctttttatgatctgagggttgaaataaatgtcagtc-aacaagcaggtatagaagcttactcaaaataaga |
826 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| | |||||||||| |||||| ||||||||||||||||| |||| |||| |
|
|
| T |
5454673 |
ttctgcttattctttttatgatctgagggttgaagttaatgtcagtcaaacaagaaggtatagaagcttactaaaaagaaga |
5454754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 86; E-Value: 2e-40
Query Start/End: Original strand, 621 - 798
Target Start/End: Complemental strand, 5828603 - 5828426
Alignment:
| Q |
621 |
tatttatcataacttgtgcacttgtcttaccaagcttctttctatatgctgacgtgaccaatacgagaacggctagtcctataataaatgcaataacccc |
720 |
Q |
| |
|
||||||||| |||| | |||||| ||||||||||||||||||||||||||| ||| ||||||| |||||| |||||| ||||| ||||||||||| || |
|
|
| T |
5828603 |
tatttatcacaactctttcacttggcttaccaagcttctttctatatgctgatgtggccaataccagaacgattagtccaataatgaatgcaataactcc |
5828504 |
T |
|
| Q |
721 |
ggcaaaaatcccagaaagcttcaagttcctcttattctttttatgatctgagggttgaaataaatgtcagtcaacaag |
798 |
Q |
| |
|
|||| | ||||| ||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
5828503 |
tgcaagagtcccaacaagcttcaacttctcgttattctttttatgatctgagggttgaagtaaatgtcagtcaacaag |
5828426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 417 - 547
Target Start/End: Original strand, 5484026 - 5484156
Alignment:
| Q |
417 |
gactttaccttgtacactggtccaaaaccaccttctcccaatttgtttctgatagagaagttatttgttgcattagtgatggttgaaaaatcaaatattg |
516 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| || || ||||| ||||||||| |||||||||||| |||||||| |||||||||||||| | |
|
|
| T |
5484026 |
gactttaccttgtacacctgtccaaaaccaccttctcctaacttatttctattagagaagtgatttgttgcattggtgatggtggaaaaatcaaatatcg |
5484125 |
T |
|
| Q |
517 |
tggccaagtcatcatcttcattctccttctt |
547 |
Q |
| |
|
| ||||||||||||||||| ||||||||||| |
|
|
| T |
5484126 |
tagccaagtcatcatcttccttctccttctt |
5484156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 596 - 810
Target Start/End: Original strand, 5484304 - 5484518
Alignment:
| Q |
596 |
aagtaaatcataaataattaagaattatttatcataacttgtgcacttgtcttaccaagcttctttctatatgctgacgtgaccaatacgagaacggcta |
695 |
Q |
| |
|
|||||||||||||||| || ||| ||| ||||||| |||| | |||||| ||||||| ||||||| ||||||||||| |||||| ||| ||||||| || |
|
|
| T |
5484304 |
aagtaaatcataaatatttgagatttacttatcattactttttcacttggcttaccatgcttcttcctatatgctgatatgaccattacaagaacggata |
5484403 |
T |
|
| Q |
696 |
gtcctataataaatgcaataaccccggcaaaaatcccagaaagcttcaagttcctcttattctttttatgatctgagggttgaaataaatgtcagtcaac |
795 |
Q |
| |
|
||||||| || ||||||||||| || |||| | ||| | | |||||||||| ||| |||||||| ||||||||| ||||||| ||||||||| |||| |
|
|
| T |
5484404 |
gtcctattatgaatgcaataactcctgcaacagtccgaacacgcttcaagtttctcgtattctttatatgatctgtaggttgaagtaaatgtcattcaag |
5484503 |
T |
|
| Q |
796 |
aagcaggtatagaag |
810 |
Q |
| |
|
|||||| || ||||| |
|
|
| T |
5484504 |
aagcagataaagaag |
5484518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 729 - 814
Target Start/End: Original strand, 5525482 - 5525567
Alignment:
| Q |
729 |
tcccagaaagcttcaagttcctcttattctttttatgatctgagggttgaaataaatgtcagtcaacaagcaggtatagaagctta |
814 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||| ||||| |
|
|
| T |
5525482 |
tcccagcaagcttcgagttcctcttattctttttatgatctgatggttgaagtaaatgtcagtcaacaagcagatatagatgctta |
5525567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 422 - 534
Target Start/End: Complemental strand, 5828938 - 5828826
Alignment:
| Q |
422 |
taccttgtacactggtccaaaaccaccttctcccaatttgtttctgatagagaagttatttgttgcattagtgatggttgaaaaatcaaatattgtggcc |
521 |
Q |
| |
|
||||||||| || |||||||| || |||||||| | ||||||| || |||| |||| ||||||||| |||||||| ||||||||||||||||||| ||| |
|
|
| T |
5828938 |
taccttgtataccggtccaaatccgccttctcctattttgtttttgttagaaaagtgatttgttgcgctagtgatgattgaaaaatcaaatattgttgcc |
5828839 |
T |
|
| Q |
522 |
aagtcatcatctt |
534 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
5828838 |
aagtcaacatctt |
5828826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 623 - 816
Target Start/End: Complemental strand, 5802999 - 5802806
Alignment:
| Q |
623 |
tttatcataacttgtgcacttgtcttaccaagcttctttctatatgctgacgtgaccaatacgagaacggctagtcctataataaatgcaataaccccgg |
722 |
Q |
| |
|
||||||||||||| | || || ||||||||||||||||||| ||||||| |||||||| || ||||||| || | |||| ||||| ||| || | |
|
|
| T |
5802999 |
tttatcataactttttcagctggcttaccaagcttctttctagatgctgatgtgaccaaaacaagaacggttaatagcataacgaatgccgaaactcctg |
5802900 |
T |
|
| Q |
723 |
caaaaatcccagaaagcttcaagttcctcttattctttttatgatctgagggttgaaataaatgtcagtcaacaagcaggtatagaagcttact |
816 |
Q |
| |
|
||| | |||| | ||||||| |||||||||||||||||||||||||| ||||||| || | || ||||||| |||||| ||| ||||||||| |
|
|
| T |
5802899 |
caagagtcccgacacgcttcaaattcctcttattctttttatgatctgaaggttgaagtacaggtgagtcaactagcaggcatataagcttact |
5802806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 864 - 1083
Target Start/End: Original strand, 5446262 - 5446489
Alignment:
| Q |
864 |
tcaggtacatacttacttaaaagtg-aaagagaatttattagtgtcacatgatttcaactattcaacaggacttaatactatc-agataaatgctgaaat |
961 |
Q |
| |
|
||||||| |||||||| |||||||| |||||||||||| ||||||||| | ||||||| | ||||| ||||||| |||| | | ||||| |||||| |
|
|
| T |
5446262 |
tcaggtatatacttacataaaagtgaaaagagaatttaatagtgtcacgtaatttcaagttttcaaggatgcttaataatatcaacacaaatggtgaaat |
5446361 |
T |
|
| Q |
962 |
atatgaaatttgtgc-atatatctaactggaaagg--aaaagatgtaat-aggaatgaaaata-caagttctgaagatgctag-cgtatat-aatgtctt |
1054 |
Q |
| |
|
|| | |||||| ||| |||||||||||| |||||| |||| ||||||| | |||||||||| |||||||||||||||| || ||||| | |||||||| |
|
|
| T |
5446362 |
atgt-aaatttatgctatatatctaact-gaaaggacaaaatatgtaataacaaatgaaaataccaagttctgaagatgccagccgtatgtaaatgtctt |
5446459 |
T |
|
| Q |
1055 |
gt-cttggtctcgatgttttctcatgtcaa |
1083 |
Q |
| |
|
|| |||||||| ||||| |||||||||||| |
|
|
| T |
5446460 |
gtccttggtcttgatgtattctcatgtcaa |
5446489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 848 - 1081
Target Start/End: Original strand, 5454809 - 5455046
Alignment:
| Q |
848 |
tgttcttagaaatatttcaggtacatacttacttaaaagtg-aaagagaatttattagtgtcacatgatttcaactattcaacaggacttaatactatc- |
945 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||| |||||||||||| |||||| || | ||||||| | |||| || ||||||| |||| |
|
|
| T |
5454809 |
tgttcttagaaatagcccaggtacatacttactt----gtgaaaagagaatttactagtgtgacgtaatttcaagttttcagcaatgcttaataatatca |
5454904 |
T |
|
| Q |
946 |
agataaatgctgaaatatatgaaatttgtgc-atatatctaactggaaag-gaaaagatgtaat-aggaatgaaaata-caagttctgaagatgcta-gc |
1040 |
Q |
| |
|
||| ||||| |||||||||| || ||| ||| ||||||||||||| |||| |||| ||||||| || || ||||||| |||||||||||||||| | | |
|
|
| T |
5454905 |
agacaaatggtgaaatatat-aagtttatgctatatatctaactgaaaagacaaaatatgtaataagaaaagaaaataccaagttctgaagatgccatcc |
5455003 |
T |
|
| Q |
1041 |
gtatat-aatgtcttgt-cttggtctcgatgttttctcatgtc |
1081 |
Q |
| |
|
|||| | |||||||||| |||||||| |||||||||||||||| |
|
|
| T |
5455004 |
gtatgtaaatgtcttgtccttggtcttgatgttttctcatgtc |
5455046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 639 - 705
Target Start/End: Original strand, 5525404 - 5525470
Alignment:
| Q |
639 |
cacttgtcttaccaagcttctttctatatgctgacgtgaccaatacgagaacggctagtcctataat |
705 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||| |||||||||| ||||| |||||||||||| |
|
|
| T |
5525404 |
cacttggcttaccaagcttctttctatatactgatgtgaccaatataagaacaattagtcctataat |
5525470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 122 - 234
Target Start/End: Complemental strand, 1107361 - 1107249
Alignment:
| Q |
122 |
aaccaaaaataaagaaatccaagcttctgttgggcatgaattcatagatcaacatcttttcatcttgttgaatagaacaaccaataagttttacaagatt |
221 |
Q |
| |
|
||||||||| ||| |||| ||||||||||| ||||| |||||||||| | ||| || || ||| ||||||| ||||||||| || || |||||||| |
|
|
| T |
1107361 |
aaccaaaaagaaatgaatctaagcttctgttcggcatatattcatagataagcattttctcttctccttgaatacaacaaccaagaaccttgacaagatt |
1107262 |
T |
|
| Q |
222 |
acggtgttgaagt |
234 |
Q |
| |
|
|||||||||||| |
|
|
| T |
1107261 |
tcggtgttgaagt |
1107249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 996 - 1083
Target Start/End: Complemental strand, 5854324 - 5854232
Alignment:
| Q |
996 |
aaaagatgtaataggaa-tgaaaatac-aagttctgaagatgctagc-gtat-ataatgtcttgtc-ttggtctcgatgttttctcatgtcaa |
1083 |
Q |
| |
|
||||||||||||||||| || |||||| ||||||||||||||| ||| |||| | ||||||||||| ||||||| ||||||||||||| |||| |
|
|
| T |
5854324 |
aaaagatgtaataggaaatgtaaataccaagttctgaagatgccagccgtatgaaaatgtcttgtccttggtctggatgttttctcatatcaa |
5854232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 75 - 135
Target Start/End: Complemental strand, 5855180 - 5855121
Alignment:
| Q |
75 |
gcaagagaaaaattgagatcaataaattgggttggtgtgaaaattcaaaccaaaaataaag |
135 |
Q |
| |
|
||||||| |||| ||||| |||||| |||| ||||||||||| |||||||||||||||||| |
|
|
| T |
5855180 |
gcaagagtaaaactgagaacaataatttgg-ttggtgtgaaagttcaaaccaaaaataaag |
5855121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 5489049 - 5489104
Alignment:
| Q |
8 |
gcttcgcatagaatctaacagatttcactttcttaagttagaatgagaactacatt |
63 |
Q |
| |
|
|||||| |||| |||||||| ||||||| |||||||||||| ||| |||||||||| |
|
|
| T |
5489049 |
gcttcgtatagtatctaacaaatttcacattcttaagttagcatgggaactacatt |
5489104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 234
Target Start/End: Complemental strand, 13854905 - 13854820
Alignment:
| Q |
149 |
tgttgggcatgaattcatagatcaacatcttttcatcttgttgaatagaacaaccaataagttttacaagattacggtgttgaagt |
234 |
Q |
| |
|
|||||| |||| ||||||| |||||||| || || ||| || |||| ||||||||| || ||||||||||| |||||||||||| |
|
|
| T |
13854905 |
tgttggacatgtattcatatatcaacattttctcttctccttcaatacaacaaccaacaacctttacaagatttcggtgttgaagt |
13854820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 325; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 20 - 588
Target Start/End: Complemental strand, 25810530 - 25809969
Alignment:
| Q |
20 |
atctaacagatttcactttcttaagttagaatgagaactacattttaagcttttagcaagagaaaaattgagatcaataaattgggttggtgtgaaaatt |
119 |
Q |
| |
|
||||| |||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||| || |
|
|
| T |
25810530 |
atctagcagatttcacattcttaagttagcatgagaactacatttcg--------gcaagagaaaaattgagataaataaatttggttggtgtgaaagtt |
25810439 |
T |
|
| Q |
120 |
caaaccaaaaataaagaaatccaagcttctgttgggcatgaattcatagatcaacatcttttcatcttgttgaatagaacaaccaataagttttacaaga |
219 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
25810438 |
caaaccaaaaataaagtaatccaagcttctgttgggcatgaattcttagatcaacatcttttcatcttgttgaatagaacaaccaagaagttttacaaga |
25810339 |
T |
|
| Q |
220 |
ttacggtgttgaagtgttgccatcaactttacttcatttttgaactcctcaattccttgtcccgatgttttagaaagcctcttaacggcgatctcttggc |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| || |||||||||| |
|
|
| T |
25810338 |
ttacggtgttgaagtgttgccatcaactttacttcatttttgaactcctcagttccttgtcctgatgttttagaaagcctcttaacagcaatctcttggc |
25810239 |
T |
|
| Q |
320 |
catctaccattatgccctaggaatattttaggaggaaattatagtacttacttatagcacttggcaaaataagggg----attaactaacttgttagcca |
415 |
Q |
| |
|
| |||||||||| | ||||| ||||||| ||||||| ||||||||| | || || ||| |||||| ||| || ||||||| || || ||| |
|
|
| T |
25810238 |
cgtctaccattacgtcctagtcatatttt---tggaaattttagtacttagagaaagtacatggtgaaataacgggataaataaactaacatgatatcca |
25810142 |
T |
|
| Q |
416 |
agactttaccttgtacactggtccaaaaccaccttctcccaatttgtttctgatagagaagttatttgttgcattagtgatggttgaaaaatcaaatatt |
515 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
25810141 |
agactataccttgtacactggtccaaaaccaccttctcccaacttgtttctgacagagaagttatttgttgcattagtgatggtcgaaaaatcaaagatt |
25810042 |
T |
|
| Q |
516 |
gtggccaagtcatcatcttcattctccttcttctgcttccagtgaaataacttttttatatggcctgaagtaa |
588 |
Q |
| |
|
|| ||||| ||| ||||||| ||||||||||| ||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
25810041 |
gtagccaattcaccatcttccttctccttcttgtgcttccagagaaataacttttttatatgccctgaagtaa |
25809969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 95; E-Value: 7e-46
Query Start/End: Original strand, 646 - 816
Target Start/End: Complemental strand, 25809821 - 25809651
Alignment:
| Q |
646 |
cttaccaagcttctttctatatgctgacgtgaccaatacgagaacggctagtcctataataaatgcaataaccccggcaaaaatcccagaaagcttcaag |
745 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||| |||||| |||||||||||| ||||||| ||| || |||| | |||||| ||||||||| |
|
|
| T |
25809821 |
cttaccaagcttctttctatacactgatgtgaccaatacaagaacgtttagtcctataatgaatgcaacaactcctgcaagagtcccagcaagcttcaat |
25809722 |
T |
|
| Q |
746 |
ttcctcttattctttttatgatctgagggttgaaataaatgtcagtcaacaagcaggtatagaagcttact |
816 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||| |
|
|
| T |
25809721 |
ttctgcttattctttttatgatctgagggttgaagttaatgtcagtcaacaagctggtatagaagcttact |
25809651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 122 - 337
Target Start/End: Original strand, 3979330 - 3979545
Alignment:
| Q |
122 |
aaccaaaaataaagaaatccaagcttctgttgggcatgaattcatagatcaacatcttttcatcttgttgaatagaacaaccaataagttttacaagatt |
221 |
Q |
| |
|
||||||||| |||| | ||||||||| ||||||||||| |||||||||||| ||| |||| || || ||| | || |||| |||||| |||||||| |
|
|
| T |
3979330 |
aaccaaaaacaaagtagtccaagcttttgttgggcatgtattcatagatcagcattgtttctcctccttcaatgcagcatccaagaagtttgacaagatt |
3979429 |
T |
|
| Q |
222 |
acggtgttgaagtgttgccatcaactttacttcatttttgaactcctcaattccttgtcccgatgttttagaaagcctcttaacggcgatctcttggcca |
321 |
Q |
| |
|
||||||||||||| | || |||||| ||||||||||||| |||| | |||||||| || | || |||||||| || || || |||||||| ||| |
|
|
| T |
3979430 |
acggtgttgaagtttggcaatcaacgccgcttcatttttgaattcctgcaacccttgtccagacttctttgaaagccttttcacagctatctcttgccca |
3979529 |
T |
|
| Q |
322 |
tctaccattatgccct |
337 |
Q |
| |
|
|||| |||| |||||| |
|
|
| T |
3979530 |
tctatcattgtgccct |
3979545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 864 - 1083
Target Start/End: Complemental strand, 25809550 - 25809323
Alignment:
| Q |
864 |
tcaggtacatacttacttaaaagtgaaa-gagaatttattagtgtcacatgatttcaactattcaacaggacttaatactatc-agataaatgctgaaat |
961 |
Q |
| |
|
||||||| |||||||| ||||||||||| ||||||||| ||||||||| | ||||||| | ||||| ||||||| |||| | | ||||| |||||| |
|
|
| T |
25809550 |
tcaggtatatacttacataaaagtgaaaagagaatttaatagtgtcacgtaatttcaagttttcaaggatgcttaataatatcaacacaaatggtgaaat |
25809451 |
T |
|
| Q |
962 |
atatgaaatttgtgc-atatatctaactggaaagg--aaaagatgtaat-aggaatgaaaata-caagttctgaagatgctag-cgtatat-aatgtctt |
1054 |
Q |
| |
|
|| | |||||| ||| |||||||||||| |||||| |||| ||||||| | |||||||||| |||||||||||||||| || ||||| | |||||||| |
|
|
| T |
25809450 |
atgt-aaatttatgctatatatctaact-gaaaggacaaaatatgtaataacaaatgaaaataccaagttctgaagatgccagccgtatgtaaatgtctt |
25809353 |
T |
|
| Q |
1055 |
gt-cttggtctcgatgttttctcatgtcaa |
1083 |
Q |
| |
|
|| |||||||| ||||| |||||||||||| |
|
|
| T |
25809352 |
gtccttggtcttgatgtattctcatgtcaa |
25809323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000007; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 120 - 278
Target Start/End: Complemental strand, 23392984 - 23392826
Alignment:
| Q |
120 |
caaaccaaaaataaagaaatccaagcttctgttgggcatgaattcatagatcaacatcttttcatcttgttgaatagaacaaccaataagttttacaaga |
219 |
Q |
| |
|
||||||||| || ||| | || |||||| ||||||||||| ||||||| ||||| | | |||| |||| ||||| | ||||||| ||| || |||||| |
|
|
| T |
23392984 |
caaaccaaagatgaagtagtctaagcttttgttgggcatgtattcatatatcaataacatttcctctttatgaatgcagcaaccaagaagcttcacaaga |
23392885 |
T |
|
| Q |
220 |
ttacggtgttgaagtgttgccatcaactttacttcatttttgaactcctcaattccttg |
278 |
Q |
| |
|
||||||||||||||| | || |||||| ||||||||||| |||||||| | |||||| |
|
|
| T |
23392884 |
ttacggtgttgaagtttcgcaatcaacacaacttcatttttaaactcctccaatccttg |
23392826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 149 - 278
Target Start/End: Original strand, 23285610 - 23285739
Alignment:
| Q |
149 |
tgttgggcatgaattcatagatcaacatcttttcatcttgttgaatagaacaaccaataagttttacaagattacggtgttgaagtgttgccatcaactt |
248 |
Q |
| |
|
||||||||||| ||||||| ||||| | | |||| ||| ||||| | ||||||| ||| || ||||||||||||||||||||| |||| |||||| |
|
|
| T |
23285610 |
tgttgggcatgtattcatatatcaataacatttcctctctatgaatgcagcaaccaagaagcttcacaagattacggtgttgaagttttgcaatcaacac |
23285709 |
T |
|
| Q |
249 |
tacttcatttttgaactcctcaattccttg |
278 |
Q |
| |
|
||||||||||| |||||||| | |||||| |
|
|
| T |
23285710 |
aacttcatttttaaactcctccaatccttg |
23285739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 123 - 185
Target Start/End: Original strand, 21180501 - 21180563
Alignment:
| Q |
123 |
accaaaaataaagaaatccaagcttctgttgggcatgaattcatagatcaacatcttttcatc |
185 |
Q |
| |
|
|||||||||||| |||||||||||| | ||||||||||||||||| || | ||| |||||||| |
|
|
| T |
21180501 |
accaaaaataaaaaaatccaagcttttattgggcatgaattcataaataagcattttttcatc |
21180563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 269
Target Start/End: Original strand, 23341769 - 23341887
Alignment:
| Q |
151 |
ttgggcatgaattcatagatcaacatcttttcatcttgttgaatagaacaaccaataagttttacaagattacggtgttgaagtgttgccatcaacttta |
250 |
Q |
| |
|
||||||||| ||||||||||||||| ||||| ||| |||||| ||||||| | ||| || |||||||||||||| ||||| |||| |||||| | |
|
|
| T |
23341769 |
ttgggcatgtattcatagatcaacaatttttcctctctgtgaatacaacaaccgagaagcttcacaagattacggtgctgaagctttgcaatcaacaaaa |
23341868 |
T |
|
| Q |
251 |
cttcatttttgaactcctc |
269 |
Q |
| |
|
|||||||||| || ||||| |
|
|
| T |
23341869 |
cttcatttttaaattcctc |
23341887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 269
Target Start/End: Complemental strand, 23385365 - 23385247
Alignment:
| Q |
151 |
ttgggcatgaattcatagatcaacatcttttcatcttgttgaatagaacaaccaataagttttacaagattacggtgttgaagtgttgccatcaacttta |
250 |
Q |
| |
|
||||||||| ||||||||||||||| ||||| ||| |||||| ||||||| | ||| || |||||||||||||| ||||| |||| |||||| | |
|
|
| T |
23385365 |
ttgggcatgtattcatagatcaacaatttttcctctctgtgaatacaacaaccgagaagcttcacaagattacggtgctgaagctttgcaatcaacaaaa |
23385266 |
T |
|
| Q |
251 |
cttcatttttgaactcctc |
269 |
Q |
| |
|
|||||||||| || ||||| |
|
|
| T |
23385265 |
cttcatttttaaattcctc |
23385247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 299
Target Start/End: Complemental strand, 19398767 - 19398720
Alignment:
| Q |
252 |
ttcatttttgaactcctcaattccttgtcccgatgttttagaaagcct |
299 |
Q |
| |
|
|||||||||||| ||| ||||||||||||| |||||||| |||||||| |
|
|
| T |
19398767 |
ttcatttttgaattccacaattccttgtccagatgttttcgaaagcct |
19398720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 299
Target Start/End: Complemental strand, 19415123 - 19415076
Alignment:
| Q |
252 |
ttcatttttgaactcctcaattccttgtcccgatgttttagaaagcct |
299 |
Q |
| |
|
|||||||||||| ||| ||||||||||||| |||||||| |||||||| |
|
|
| T |
19415123 |
ttcatttttgaattccacaattccttgtccagatgttttcgaaagcct |
19415076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 186
Target Start/End: Complemental strand, 23189431 - 23189382
Alignment:
| Q |
137 |
aatccaagcttctgttgggcatgaattcatagatcaacatcttttcatct |
186 |
Q |
| |
|
||||||||||| | |||||||||||||||||||| | ||| ||||||||| |
|
|
| T |
23189431 |
aatccaagcttttattgggcatgaattcatagataagcattttttcatct |
23189382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 138 - 233
Target Start/End: Complemental strand, 20279205 - 20279110
Alignment:
| Q |
138 |
atccaagcttctgttgggcatgaattcatagatcaacatcttttcatcttgttgaatagaacaaccaataagttttacaagattacggtgttgaag |
233 |
Q |
| |
|
|||||| ||| |||| |||||| | ||||| ||||||||||||||||| || |||| ||||||||| |||||| |||||||| ||||||||||| |
|
|
| T |
20279205 |
atccaaacttttgtttggcatgtactcatacatcaacatcttttcatcaccttcaatacaacaaccaagaagtttaacaagattgcggtgttgaag |
20279110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 233
Target Start/End: Complemental strand, 20231225 - 20231129
Alignment:
| Q |
137 |
aatccaagcttctgttgggcatgaattcatagatcaacatcttttcatcttgttgaatagaacaaccaataagttttacaagattacggtgttgaag |
233 |
Q |
| |
|
||||||| ||| |||| |||||| ||||||| ||||||||||||||||| || || | |||| ||||||||| ||||||| || ||||||||||| |
|
|
| T |
20231225 |
aatccaaacttttgtttggcatgtattcatacatcaacatcttttcatcaccttcaacacaacagccaataagtcttacaaggttgcggtgttgaag |
20231129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 233
Target Start/End: Original strand, 20062950 - 20063045
Alignment:
| Q |
138 |
atccaagcttctgttgggcatgaattcatagatcaacatcttttcatcttgttgaatagaacaaccaataagttttacaagattacggtgttgaag |
233 |
Q |
| |
|
|||||| ||| |||| |||||| | ||||| ||||||||||||||||| | |||| |||| |||| |||| |||||||||||||||||||||| |
|
|
| T |
20062950 |
atccaaacttttgtttggcatgtactcatacatcaacatcttttcatcaccgtcaatacaacagccaagaagtcttacaagattacggtgttgaag |
20063045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 233
Target Start/End: Original strand, 20168505 - 20168600
Alignment:
| Q |
138 |
atccaagcttctgttgggcatgaattcatagatcaacatcttttcatcttgttgaatagaacaaccaataagttttacaagattacggtgttgaag |
233 |
Q |
| |
|
|||||| |||||||| ||||| | ||||| ||||||||||||||||| || |||| | ||||||| |||| |||||||||| ||||||||||| |
|
|
| T |
20168505 |
atccaaacttctgtttagcatgtactcatacatcaacatcttttcatcgccttcaatacagcaaccaacaagtcttacaagattgcggtgttgaag |
20168600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 233
Target Start/End: Complemental strand, 20263679 - 20263584
Alignment:
| Q |
138 |
atccaagcttctgttgggcatgaattcatagatcaacatcttttcatcttgttgaatagaacaaccaataagttttacaagattacggtgttgaag |
233 |
Q |
| |
|
|||||| ||| |||| ||||| | ||||| ||||||||||||||||| || || | |||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
20263679 |
atccaaacttttgtttggcatatactcatacatcaacatcttttcatcaccttcaacacaacagccaataagtcttacaagattacggtgttgaag |
20263584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 233
Target Start/End: Complemental strand, 20283757 - 20283687
Alignment:
| Q |
163 |
tcatagatcaacatcttttcatcttgttgaatagaacaaccaataagttttacaagattacggtgttgaag |
233 |
Q |
| |
|
||||| |||||||||||||||||| || || | |||| |||| |||| |||||||||| ||||||||||| |
|
|
| T |
20283757 |
tcatacatcaacatcttttcatctccttcaacacaacagccaaaaagtcttacaagattgcggtgttgaag |
20283687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000004; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 422 - 516
Target Start/End: Complemental strand, 34218445 - 34218351
Alignment:
| Q |
422 |
taccttgtacactggtccaaaaccaccttctcccaatttgtttctgatagagaagttatttgttgcattagtgatggttgaaaaatcaaatattg |
516 |
Q |
| |
|
||||||||| ||||||||||| || ||||| ||||||||||| | |||||||||||| |||| ||||| ||| |||| ||||||||||||| |
|
|
| T |
34218445 |
taccttgtaaactggtccaaatcctccttcccccaatttgttatcaacagagaagttattggttgaattagctatgattgataaatcaaatattg |
34218351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 260
Target Start/End: Complemental strand, 34328599 - 34328536
Alignment:
| Q |
197 |
aacaaccaataagttttacaagattacggtgttgaagtgttgccatcaactttacttcattttt |
260 |
Q |
| |
|
||||||||| ||| ||||||||||| |||||||||||| | || ||||| |||||||| ||||| |
|
|
| T |
34328599 |
aacaaccaagaagctttacaagatttcggtgttgaagtttcgcaatcaattttacttcgttttt |
34328536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 172
Target Start/End: Complemental strand, 34218817 - 34218764
Alignment:
| Q |
119 |
tcaaaccaaaaataaagaaatccaagcttctgttgggcatgaattcatagatca |
172 |
Q |
| |
|
||||||||||||| ||| | ||||||||||||||| |||||||||||| |||| |
|
|
| T |
34218817 |
tcaaaccaaaaatgaagtagtccaagcttctgttgatcatgaattcatatatca |
34218764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0090 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0090
Description:
Target: scaffold0090; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 234
Target Start/End: Original strand, 8591 - 8676
Alignment:
| Q |
149 |
tgttgggcatgaattcatagatcaacatcttttcatcttgttgaatagaacaaccaataagttttacaagattacggtgttgaagt |
234 |
Q |
| |
|
|||||| |||| ||||||| |||||||| || |||||| || |||| ||||||||| || || |||||||| |||||||||||| |
|
|
| T |
8591 |
tgttggacatgtattcataaatcaacattttctcatctccttcaatacaacaaccaacaaccttaacaagatttcggtgttgaagt |
8676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 284
Target Start/End: Complemental strand, 31732739 - 31732666
Alignment:
| Q |
211 |
tttacaagattacggtgttgaagtgttgccatcaactttacttcatttttgaactcctcaattccttgtcccga |
284 |
Q |
| |
|
||||| ||||| |||||||||||| |||| || | ||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
31732739 |
tttactagatttcggtgttgaagttttgcaattagctttacttcatttatgaactcggtcattccttgtcccga |
31732666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 284
Target Start/End: Complemental strand, 31745640 - 31745567
Alignment:
| Q |
211 |
tttacaagattacggtgttgaagtgttgccatcaactttacttcatttttgaactcctcaattccttgtcccga |
284 |
Q |
| |
|
||||| ||||| |||||||||||| |||| || | ||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
31745640 |
tttactagatttcggtgttgaagttttgcaattagctttacttcatttatgaactcggtcattccttgtcccga |
31745567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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