View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3056-Insertion-6 (Length: 1067)
Name: NF3056-Insertion-6
Description: NF3056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3056-Insertion-6 |
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Alignment Details
Target: chr2 (Bit Score: 510; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 16 - 588
Target Start/End: Original strand, 34095306 - 34095881
Alignment:
| Q |
16 |
cactttgatcttcctcatcaacaacaacaggttttgaagtatggtgcattttcaccaactgggccatttcagtttcctcaacaacaaatgatgatgaatg |
115 |
Q |
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| T |
34095306 |
cactttgatcttcctcatcaac---aacaggttttgaagtatggtgcattttcaccaactgggccatttcagtttcctcaacaacaaatgatgatgaatg |
34095402 |
T |
|
| Q |
116 |
aaaacaccaccaacaacaataataacactgttttggttggttctggttatgttccttttgttggttctaacgttggtgctggatggattgtgcctaacaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34095403 |
aaaacaccaccaacaacaataataacactgttttggttggttctggttatgttccttttgttggttctaacgttggtgctggatggattgtgcctaacaa |
34095502 |
T |
|
| Q |
216 |
tcacaatcagaatcagaataacattaacaacagggttgttgttggtggcggtaactatggatctggttcactactttgtagtagtagaaacccttttgag |
315 |
Q |
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| T |
34095503 |
tcagaatcagaatcagaataacattaaaaacagggttgttgttggtggtggtaactatggatctggttcactactttgtagtagtagaaacccttttgag |
34095602 |
T |
|
| Q |
316 |
ctttctaaagagctctcttcaatgccaaatcttcttcactctcaaccttttgatctttgcctcaaggtataatatatttaatttaatcaatgtcatttac |
415 |
Q |
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| T |
34095603 |
ccttctaaagagctctcttcaatgccaaatcttcatcactctcaaccttttgatctttgcctcaaggtataatatatttaatttaatcaatgtcatttac |
34095702 |
T |
|
| Q |
416 |
tttaatcctttttgttttaaacgtgtttaagtttatttcatgacattgattcatgattagatcatggagattattaatttaacatcttt------ttgat |
509 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || || |
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| T |
34095703 |
tttaatcctttttgttttaaacgtgtttaagtttatttcatgacattgattcatgattagatcatggagattattaatttaacattttttttttgtttat |
34095802 |
T |
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| Q |
510 |
gtacatcaaattttatgataaagttagctccttaatcttgtaattaaaaatgttattcatgttctcttacgtttagtta |
588 |
Q |
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| T |
34095803 |
gtacatcaaattttatgatgaagttagctccttaatcttgtaattaaaaatgttattcatgttctcttacgtttagtta |
34095881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 5e-59
Query Start/End: Original strand, 803 - 1066
Target Start/End: Original strand, 34096096 - 34096358
Alignment:
| Q |
803 |
gaagttaatttaatgaataatttgactttttgaatttatttaattcnnnnnnnnnctttcagaaaacacgtttgaatgaggaggagagtaatgtaatgag |
902 |
Q |
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| T |
34096096 |
gaagttaatttgatgaataatttgactttttgaatttatttaat----attttttatttcagaaaacacgtttgaatgaggaggagagtaatgtaatgag |
34096191 |
T |
|
| Q |
903 |
aggagctgggaacaaaataccaagggaatttgggagggcatggtctaatcatcattatgttcatgattttcttggaggatatatg-ctcaa-ctcaa-ct |
999 |
Q |
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||||||||| | |||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| || |
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| T |
34096192 |
aggagctgg--aataaatac--aaggaatttgg--aggcatggtctaatcatcattatgttcatgattttcttggaggatatatgcctcaacctcaacct |
34096285 |
T |
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| Q |
1000 |
tctgct----caactcatcacaatcttgatgagg-ataa-tcatacatatctagtaattttatttatttttgg |
1066 |
Q |
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|||||| |||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||| |
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| T |
34096286 |
tctgcttatccaactcatcacaatcttgatgaggtataattcatacatatctagttattttatttatttttgg |
34096358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 699 - 734
Target Start/End: Original strand, 34095994 - 34096029
Alignment:
| Q |
699 |
ggttatttaatgttgctatacattttactattcatg |
734 |
Q |
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||||||||||||||||||||||||||| |||||||| |
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| T |
34095994 |
ggttatttaatgttgctatacattttattattcatg |
34096029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 112
Target Start/End: Complemental strand, 12294624 - 12294560
Alignment:
| Q |
48 |
tttgaagtatggtgcattttcaccaactgggccatttcagtttcctcaacaacaaatgatgatga |
112 |
Q |
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| T |
12294624 |
tttgaggtatggtgcattatcatcaaatgtgtcatttcagtttcctcaacaacaagtgatgatga |
12294560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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