View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3056_high_2 (Length: 379)
Name: NF3056_high_2
Description: NF3056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3056_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 149 - 337
Target Start/End: Complemental strand, 34095170 - 34094983
Alignment:
| Q |
149 |
aagtgaaaagagagaaagagaaaagtgttatgtggtgaaagtgttttgtgtgtttatatagnnnnnnngtgtgagggttttattttatgaaggaaaagga |
248 |
Q |
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| T |
34095170 |
aagtgaaaagagagaaagagaaaagtgttatgtggtgaaagtgttttgtgtgtttatatagaaaaaa-gtgtgagggttttattttatgaaggaaaagga |
34095072 |
T |
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| Q |
249 |
aaatcagaatgtgttggtgaaaattggtgaaaggacattttggtatatgtgtgtaatgcttttggggggtcttattgttttgggaaccc |
337 |
Q |
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| T |
34095071 |
aaatcagaatgtgttggtgaaaattggtgaaaggacattttggtatatgtgtgtaatgcttttggagggtcttattgttttggggaccc |
34094983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 34095303 - 34095243
Alignment:
| Q |
16 |
ttttcatcaatgccgctatcctctgcttctctaactgttcaactcctacacctcttagtgg |
76 |
Q |
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| T |
34095303 |
ttttcatcaatgccgctatcctctgcttctctaactgttcaactcctacacctcttagtgg |
34095243 |
T |
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