View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3056_low_1 (Length: 1664)
Name: NF3056_low_1
Description: NF3056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3056_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 552; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 17 - 682
Target Start/End: Original strand, 43141860 - 43142544
Alignment:
| Q |
17 |
agcatgtaggtcaacattttgacattgtcaaaacacttccaatagggttgttggaaatatgctccggag----------------atgaagcatgttttg |
100 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
43141860 |
agcatgtgggtcaacattttgacattgtcaaaacacttccaatagggttgttggaaatatgctccggagtacccttctgatcttgatgaagcatgttttg |
43141959 |
T |
|
| Q |
101 |
gctacaaaatattagatttgcatgtattttcttggtttacnnnnnnn-cccacattaatattgtgcatacatgatgtagtcaattacatgttcacattgt |
199 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
43141960 |
gctacaaaatattagatttgcatgtattttcttggtttacttttttttcccacattaatattgtgcatacatgatgtaatcaattacatgttcacattgt |
43142059 |
T |
|
| Q |
200 |
ttattatcactagtagtgtgatcataactcataagttcagttgacgtacagttta--gctcttttatgtatgcttattcttaaaggatatacaagaaatt |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43142060 |
ttattatcactagtagtgtgatcataactcataagttcagttgacgtacagtttatagctcttttatgtatgcttattcttaaaggatatacaagaaatt |
43142159 |
T |
|
| Q |
298 |
ggaattacatcttggtactatctgtgtgtagtgaattagaaagctcggtgtaaagttttggaaaatgtttagtgtacaccaaagagaaaacgaaagaaaa |
397 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43142160 |
ggaattacatcttggtactatctgtgtgtagtgaattagaaagctcggtgtaaagttttggaaaatgtttagtgtacaccaaagagaaaacgaaagaaaa |
43142259 |
T |
|
| Q |
398 |
agagagtggtctaataatattgtacatcatcacatatcttcatccggaatatgttttaacctattaaaaccaatggtactaatgataacatgtcttcatc |
497 |
Q |
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|||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43142260 |
agagagtggtctaataatgttgtacctcatcacatatcttcatccggaatatgttttaacctattaaaaccaatggtactaatgataacatgtcttcatc |
43142359 |
T |
|
| Q |
498 |
aatgggctgtgcatggttaaccaaaccatataacccaatattttttggttaaggttcatataccaaaccattatttggaaaacaccggattatgcttcgg |
597 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
43142360 |
aatgggctgtgcatggttaaccaaaccatataacccaatattttttggttaaggttcatataccaaaccattatttggaaaacaccgaattatgcttcgg |
43142459 |
T |
|
| Q |
598 |
aagcggtctgggccggtttagaacaggttccattatatttgattttcagtcgttaaattcggctgagtgctaccacaaccctctc |
682 |
Q |
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| T |
43142460 |
aagcggtttgggccggtttagaaccggttccattatatttgattttcagtcattaatttcggttgagtgctaccacaaccctctc |
43142544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 1213 - 1419
Target Start/End: Original strand, 43143050 - 43143256
Alignment:
| Q |
1213 |
ttgaaaagtattactaatgagaatgaacacataacaatgaaatgtgtgacctcatctatctaattggtaccttaatccaaccatttgcaaaagcaatgcc |
1312 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43143050 |
ttgagaagtattactaatgagaatgaacacataacaatgaaatgtgtgacctcatctatctaattggtaccttaatccaaccatttgcaaaagcaatgcc |
43143149 |
T |
|
| Q |
1313 |
taagattacaaaaggagttgacataccaaataaaataatataaggaagtggcgtcatcattggattctctccttctctctcacctgctgactgccaatat |
1412 |
Q |
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| T |
43143150 |
taagattacaaaaggagttgacataccaaataaaataatataaggaagtggcgtcatcattggattctctccttctctctcacctgctgactgccaatat |
43143249 |
T |
|
| Q |
1413 |
ctgcatc |
1419 |
Q |
| |
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||||||| |
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| T |
43143250 |
ctgcatc |
43143256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 171; E-Value: 4e-91
Query Start/End: Original strand, 702 - 911
Target Start/End: Original strand, 43142540 - 43142752
Alignment:
| Q |
702 |
ctctcatttccgttgtccttgtttttgctcttacattctcttatgaaaatacgtggttcataagagaatgtgcgaacattaacaatgatggttgaagtga |
801 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||| |
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| T |
43142540 |
ctctcacttccgttgtccttgtttttgctcttacattctcttatgaaaataagtggttcataagagaatgtgtgaacattaacaatgatggttgaaatga |
43142639 |
T |
|
| Q |
802 |
gttaaaaggggacaatcatag---aaagagaggagtggcaaagagaacaaaaccatgctacgtactaataccatcaattagtgttctcaaacaaagtgcg |
898 |
Q |
| |
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||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
43142640 |
gttaaaaggggacaaccatagaataaagagaggagtggcaaagagaacaaaaccatgctatgtactaataccatcaattagtgttctcaaacaaattgcg |
43142739 |
T |
|
| Q |
899 |
ttcaattgtgtaa |
911 |
Q |
| |
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||||||||||||| |
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| T |
43142740 |
ttcaattgtgtaa |
43142752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 117; E-Value: 7e-59
Query Start/End: Original strand, 1482 - 1648
Target Start/End: Original strand, 43143336 - 43143514
Alignment:
| Q |
1482 |
catactgttctggttcttgttctctggttataaatttcnnnnnnnctcctttcttggtttcttcatctcgaccacctaatacaacaaatatataccaaca |
1581 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43143336 |
catactgttctggttcttgttctctggttataaatttctttttttctcctttcttggtttcttcatctcgaccacctaatacaacaaatatataccaaca |
43143435 |
T |
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| Q |
1582 |
caaccatatt------------aatcataatgtttgcatgaaaattaactaaactaaaaatagacagtatagttttaat |
1648 |
Q |
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| T |
43143436 |
caaccatattaataaaataatgaatcataatgtttgcatgaaaattaactaaactaaaaatagacagtatagttttaat |
43143514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 85; E-Value: 9e-40
Query Start/End: Original strand, 1011 - 1099
Target Start/End: Original strand, 43142799 - 43142887
Alignment:
| Q |
1011 |
aaattactttaccaaaagtatcttcgttctttgtattattttgaagttaaaggttctgttacaaaacgatatgtatatgttttaacatg |
1099 |
Q |
| |
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| T |
43142799 |
aaattactttaccaaaagtatcttcgttctttgtattattttgaagttaaaggttctgttacaaaacgatgtgtatatgttttaacatg |
43142887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 52; E-Value: 4e-20
Query Start/End: Original strand, 1158 - 1213
Target Start/End: Original strand, 43142969 - 43143024
Alignment:
| Q |
1158 |
ctggaattgaatattgctgacataatgtttgtaccgttacatatatgtgaaaaagt |
1213 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
43142969 |
ctggaattgaatattgctgacataatatttgtaccgttacatatatgtgaaaaagt |
43143024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.00000000000001
Query Start/End: Original strand, 936 - 986
Target Start/End: Original strand, 43142744 - 43142794
Alignment:
| Q |
936 |
attgtgcaatttaatccacgtaattttgttcatgaggtccttgttctatac |
986 |
Q |
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|||||| ||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
43142744 |
attgtgtaatttaatccacgtaattttgttcatgaggttcttgttctatac |
43142794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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