View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3056_low_12 (Length: 230)
Name: NF3056_low_12
Description: NF3056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3056_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 14 - 211
Target Start/End: Original strand, 26621770 - 26621960
Alignment:
| Q |
14 |
gcacagactgggtttttggaatggaatttggaagttgaaggctcctccgaaggtgaagaacttgatatggagaatatgccggggatgcttaccagctcgt |
113 |
Q |
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| T |
26621770 |
gcacatactgggtttttggaatggaatttggaagttgaaggctcctccgaaggtgaagaacttgatatggagaatatgtcggggatgcttaccaacttgt |
26621869 |
T |
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| Q |
114 |
gccaaattgttagataaaagagtgaactgtgcctctgtgtgttctatgtgtgaagattgtaggaaattatgaagatgaccttcatgttctgtttgatt |
211 |
Q |
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| T |
26621870 |
gccaaattgttagataaaagagtgaactgtacctctgtgtgttctatgtgtga-------tggaaattatgaagatgaccttcatgttttgtttgatt |
26621960 |
T |
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Target: chr8 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 15 - 211
Target Start/End: Original strand, 7175229 - 7175418
Alignment:
| Q |
15 |
cacagactgggtttttggaatggaatttggaagttgaaggctcctccgaaggtgaagaacttgatatggagaatatgccggggatgcttaccagctcgtg |
114 |
Q |
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||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
7175229 |
cacagaccgggtttttggaatggaatttggaagttgaaggcttctccgaaggtgaagaacttgatatggagaatatgcctgggatgcttaccaactcgtg |
7175328 |
T |
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| Q |
115 |
ccaaattgttagataaaagagtgaactgtgcctctgtgtgttctatgtgtgaagattgtaggaaattatgaagatgaccttcatgttctgtttgatt |
211 |
Q |
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| T |
7175329 |
ccaaactgttagataaaagagtgaactgtacctctatgtgttctatgtgtga-------tggaaattatgaagatgaccttcatgttctgtttgatt |
7175418 |
T |
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