View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3056_low_3 (Length: 369)
Name: NF3056_low_3
Description: NF3056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3056_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 48 - 359
Target Start/End: Complemental strand, 31291192 - 31290881
Alignment:
| Q |
48 |
ttcagagatggagaaatcaaatgccaaacattagctgctctccatacatcaatggaaaaatatgtggtaactatccttattggggtcgttacacgtaaca |
147 |
Q |
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| T |
31291192 |
ttcagagatggagaaatcaaatgccaaacattagctgctctccatatatcaatggaaaaatatgtggtaactatccttatcggggtcgttacacgtaaca |
31291093 |
T |
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| Q |
148 |
caacctgatagacaattgatacctatgtttatgagctttacacgcgtagggaataagtatctacagagtcaccacatcaagttcctgacttttggaggta |
247 |
Q |
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| T |
31291092 |
caacctgatagacaattgaaacctatgtttatgagctttacacgcgtagggaataagtatctacagactcaccacatcaagttcctgacttttggaggta |
31290993 |
T |
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| Q |
248 |
ctttccatttccacataccattatagcactcgggtttccacagataattattattgataatgtcttcaatgcaaatacggtaagaaattctaacatagta |
347 |
Q |
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| T |
31290992 |
ctttcaatttccacataccattatagcactcgggtttccacagataattattattaataatgtcttcaatgcaaatacggtaagaaattctaacatagta |
31290893 |
T |
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| Q |
348 |
aagtccattctt |
359 |
Q |
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| T |
31290892 |
aagtccattctt |
31290881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 31291317 - 31291275
Alignment:
| Q |
1 |
tgtacttgactagaagggctttgattgcgattagcactcctcc |
43 |
Q |
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| T |
31291317 |
tgtacttgactagaagggctttgattgcgattagcactcctcc |
31291275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 48 - 251
Target Start/End: Original strand, 29386537 - 29386753
Alignment:
| Q |
48 |
ttcagagatggagaaatcaaatgccaaacattagctgctctccatacatcaatgg--------------aaaaatatgtggtaactatccttattggggt |
133 |
Q |
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| T |
29386537 |
ttcagagatggagaaatcaaatgtcaaacattagctactctccatacttcaatggtcgtctttcaatgaaaaaatatgtggtagctatcctcat-ggggt |
29386635 |
T |
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| Q |
134 |
cgttacacgtaacacaacctgatagacaattgatacctatgtttatgagctttacacgcgtagggaataagtatctacagagtcaccacatcaagttcct |
233 |
Q |
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| T |
29386636 |
ctttacatgtgacacacatcgatggacaattgacatctatgcttctgagcttcacatgcgtagggaaatagtctctatatattctccacaccaagtttct |
29386735 |
T |
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| Q |
234 |
gacttttggaggtacttt |
251 |
Q |
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| T |
29386736 |
gacttttggaggtacttt |
29386753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 15924266 - 15924306
Alignment:
| Q |
57 |
ggagaaatcaaatgccaaacattagctgctctccatacatc |
97 |
Q |
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| T |
15924266 |
ggagaaatcaaatgccaaacattagctgcactccatacatc |
15924306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 348
Target Start/End: Original strand, 15924476 - 15924522
Alignment:
| Q |
302 |
tgataatgtcttcaatgcaaatacggtaagaaattctaacatagtaa |
348 |
Q |
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| T |
15924476 |
tgataatgtcttcaacgcaaatgcggtaagaacttctaacagagtaa |
15924522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 142
Target Start/End: Original strand, 15924325 - 15924365
Alignment:
| Q |
102 |
gaaaaatatgtggtaactatccttattggggtcgttacacg |
142 |
Q |
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| T |
15924325 |
gaaaaatatgtggtagctatcctcatgggggtcgttacacg |
15924365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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