View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3056_low_4 (Length: 296)
Name: NF3056_low_4
Description: NF3056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3056_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 5778910 - 5779188
Alignment:
| Q |
1 |
tccaaatagatgaaaacttggttcaccctgcaaaaataatgttgcatgtgagattgatgaaaaacaatttgattattgaaggaattagaatataggtaat |
100 |
Q |
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| T |
5778910 |
tccaaatagatgaaaacttggttcaccctgcagaaataatgttgcatgtgagattgatgaaaaacaatttgattattgaaggaattagaatataggtaat |
5779009 |
T |
|
| Q |
101 |
tcaagcatttacttttaatcatatcaaacttaccaaatcaagttccttaaagattaaatgagctaaatttcaatacaatcattttcaacaaactaatttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5779010 |
tcaagcatttacttttaatcatatcaaacttaccaaatcaagttccttaaagattaaatgagctaaatttcaatacaatcattttcaacaaactaatttc |
5779109 |
T |
|
| Q |
201 |
atttgaattgacttttgattaacattcacccaaaaacactacaactaatataacaaaaaatgattggcgcgtgtttggt |
279 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
5779110 |
atttgaattgacttttgattaacattcacccaaaaacactaaaactaatataacaaaaaatgattggcgcgtgtttggt |
5779188 |
T |
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