View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3056_low_8 (Length: 245)
Name: NF3056_low_8
Description: NF3056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3056_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 39630318 - 39630548
Alignment:
| Q |
1 |
aaagatgttaataaaagccattcaaacaagaaattttannnnnnnnatgaagttcgaggctcgaaatctaagaccatgagataaaggcaatacatgcacg |
100 |
Q |
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| T |
39630318 |
aaagatgttaataaaagccattcaaacaagaaattttattttttt-atgaagttcgaggctcgaaatctaagaccatgagataaaggcaatacatgcacg |
39630416 |
T |
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| Q |
101 |
aaattttannnnnnnnaattacgtcagttccatgctatcagacnnnnnnnnnnnnggatcattgttatagttttcattatcagttctatatggactcaat |
200 |
Q |
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| T |
39630417 |
aaatttta-tttttttaattacgtcagttccatgctatcacacaaaaaacaaaaaggatcattgt--tagttttcattatcagttccatatggactcaac |
39630513 |
T |
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| Q |
201 |
gtcaaaccacaaccattagctcatcattaagtttt |
235 |
Q |
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||||||||||||||||||||||||||| ||||||| |
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| T |
39630514 |
gtcaaaccacaaccattagctcatcatcaagtttt |
39630548 |
T |
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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 182 - 240
Target Start/End: Complemental strand, 28652323 - 28652265
Alignment:
| Q |
182 |
agttctatatggactcaatgtcaaaccacaaccattagctcatcattaagttttctgtg |
240 |
Q |
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||||| ||||||||| ||||| |||||||||||||||||| ||||| ||||||| |||| |
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| T |
28652323 |
agttccatatggactaaatgttaaaccacaaccattagctaatcatcaagttttttgtg |
28652265 |
T |
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