View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3057_high_15 (Length: 321)
Name: NF3057_high_15
Description: NF3057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3057_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 16 - 303
Target Start/End: Original strand, 28966688 - 28966975
Alignment:
| Q |
16 |
atgactgaatgggattgcttgtgcaatacaatcttacaattggcaaaacttttatttgaatggaacatctgagttgccttctgcagaagagaatttcttc |
115 |
Q |
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| T |
28966688 |
atgactgaatgggattgcttgtgcaatacaatcttacaattggcaaaacttttattttaatggaacatctgagttgccttctgcagaagagaatttcttc |
28966787 |
T |
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| Q |
116 |
ttgcctgttagaaactcaatccttcaaacctttgaacatatggtatccaagtaatatttcatttgtaaggtacactatttgaaaactacatgaagggctt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28966788 |
ttgcctgttagaaactcaatccttcaaacctttgaacatatggtatccaattaatatttcatttgtaaggtacactatttgaaaactacatgaagggctt |
28966887 |
T |
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| Q |
216 |
caattgtttttccgtttttgccttcataccttactttttctatgttgatattaccgaaattgtttagcacttgttgtcaactataggt |
303 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
28966888 |
caattgtttttccgtttctgccttcataccttactttttctatgttgatattactgaaattgtttagcacttgttgtcaactataggt |
28966975 |
T |
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