View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3057_high_2 (Length: 586)

Name: NF3057_high_2
Description: NF3057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3057_high_2
NF3057_high_2
[»] chr3 (3 HSPs)
chr3 (137-575)||(45082399-45082834)
chr3 (27-111)||(45082836-45082920)
chr3 (151-223)||(30440644-30440715)
[»] chr7 (12 HSPs)
chr7 (150-223)||(18343912-18343985)
chr7 (150-223)||(18347441-18347514)
chr7 (143-223)||(19531546-19531626)
chr7 (153-223)||(18344818-18344888)
chr7 (150-223)||(18581948-18582021)
chr7 (149-224)||(42681338-42681412)
chr7 (150-223)||(31299701-31299773)
chr7 (150-223)||(42681195-42681267)
chr7 (158-208)||(9901996-9902046)
chr7 (158-208)||(21515998-21516048)
chr7 (158-208)||(28029733-28029783)
chr7 (158-208)||(36430608-36430658)
[»] chr5 (9 HSPs)
chr5 (150-225)||(10050873-10050948)
chr5 (150-223)||(6685889-6685962)
chr5 (154-219)||(9246609-9246674)
chr5 (150-223)||(4195747-4195819)
chr5 (150-223)||(34180901-34180973)
chr5 (158-208)||(3432382-3432432)
chr5 (158-208)||(4630401-4630451)
chr5 (158-208)||(16167781-16167831)
chr5 (158-208)||(35885773-35885823)
[»] chr4 (10 HSPs)
chr4 (154-225)||(748590-748661)
chr4 (150-223)||(1452387-1452460)
chr4 (150-225)||(53051467-53051541)
chr4 (151-223)||(14066299-14066370)
chr4 (158-209)||(32270455-32270506)
chr4 (158-208)||(7328098-7328148)
chr4 (158-208)||(7984535-7984585)
chr4 (158-208)||(29275996-29276046)
chr4 (158-208)||(40818933-40818983)
chr4 (158-208)||(42243869-42243919)
[»] chr1 (4 HSPs)
chr1 (150-225)||(395448-395523)
chr1 (150-225)||(28375690-28375764)
chr1 (151-215)||(29529081-29529144)
chr1 (158-208)||(31972658-31972708)
[»] chr8 (5 HSPs)
chr8 (150-225)||(41264117-41264191)
chr8 (158-208)||(4362772-4362822)
chr8 (158-208)||(12132478-12132528)
chr8 (158-208)||(14694837-14694887)
chr8 (158-208)||(33332331-33332381)
[»] chr2 (3 HSPs)
chr2 (151-216)||(17955705-17955769)
chr2 (158-208)||(5246077-5246127)
chr2 (158-208)||(43903894-43903944)


Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 137 - 575
Target Start/End: Complemental strand, 45082834 - 45082399
Alignment:
Q  137 caattaaacaatcagccgtcttagctcagctggtagagcgcatggcttttaaccatgtggtcgtgggttcgattcccacagacggcgttatagaatannn 236  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  45082834 caattaaacaaccagccgtcttagctcagctggtagagcgcatggcttttaaccatgtggtcgtgggttcgattcccacagacggcgttatagaatattt 45082735  T
Q  237 nnnnnnnnnnnnnngttacgtaacggtaacagaacgccacgattaaatgaacatgggagaaaacgcagaatgtttaaatgaaacgtgaaaaaagatttga 336  Q
                  ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  45082734 tttctgatttttttgttacgtaatggtaacagaacgccaagattaaatgaacatgggagaaaacgcagaatgtttaaatgaaacatgaaaaaagatttga 45082635  T
Q  337 ttatacagaggaaagaaaagaacctgttgacgaaacatgggagagtcgttgagatgtgcgaaattcattaacagaaaataaaacaatgcttaatattctt 436  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  45082634 tcatacagaggaaagaaaagaacctgttgacgaaacatgggagagtcgttgagatgtgcgaaattcattaacagagaataaaacaatgcttaatattctt 45082535  T
Q  437 cttgtgtttgtttgttgttgtcacgttgttcctcttttgctgattattctaaggtgacagaaaactaaagaaaaaagagataggtatttgcttc-ttttt 535  Q
    ||||||||    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  45082534 cttgtgtt----tgttgttgtcacgttgttcctcttttgctgattattctaaggtgacaaaaaactaaagaaaaaagagataggtatttgcttctttttt 45082439  T
Q  536 ggttcatgttatttttgaagttgtaattgcgatatttcat 575  Q
     |||||||||||||||||||||||||||||||||||||||    
T  45082438 tgttcatgttatttttgaagttgtaattgcgatatttcat 45082399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 27 - 111
Target Start/End: Complemental strand, 45082920 - 45082836
Alignment:
Q  27 tgcgttgacgttattcatgatacataattgagcaatcaattttttgttggtacacagaacacatgcataattattacatgaccca 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||    
T  45082920 tgcgttgacgttattcatgatacataattgagcaatcaattttttgttcgtacacaaaacacacgcataattattacatgaccca 45082836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 151 - 223
Target Start/End: Original strand, 30440644 - 30440715
Alignment:
Q  151 gccgtcttagctcagctggtagagcgcatggcttttaaccatgtggtcgtgggttcgattcccacagacggcg 223  Q
    ||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||    
T  30440644 gccgtcttagctcag-tggtagagcgcgtggcttttaaccacgtggtcgtgggttcgatccccacagacggcg 30440715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 1e-33; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 150 - 223
Target Start/End: Original strand, 18343912 - 18343985
Alignment:
Q  150 agccgtcttagctcagctggtagagcgcatggcttttaaccatgtggtcgtgggttcgattcccacagacggcg 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18343912 agccgtcttagctcagctggtagagcgcatggcttttaaccatgtggtcgtgggttcgattcccacagacggcg 18343985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 150 - 223
Target Start/End: Original strand, 18347441 - 18347514
Alignment:
Q  150 agccgtcttagctcagctggtagagcgcatggcttttaaccatgtggtcgtgggttcgattcccacagacggcg 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  18347441 agccgtcttagctcagctggtagagcgcatggcttttaaccatgtggtcgtgggttcgattcccacagatggcg 18347514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 143 - 223
Target Start/End: Original strand, 19531546 - 19531626
Alignment:
Q  143 aacaatcagccgtcttagctcagctggtagagcgcatggcttttaaccatgtggtcgtgggttcgattcccacagacggcg 223  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  19531546 aacaagcagccgtcttagctcagctggtagagcgcgtggcttttaaccacgtggtcgtgggttcgattcccacagacggcg 19531626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 153 - 223
Target Start/End: Original strand, 18344818 - 18344888
Alignment:
Q  153 cgtcttagctcagctggtagagcgcatggcttttaaccatgtggtcgtgggttcgattcccacagacggcg 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  18344818 cgtcttagctcagctggtagagcgcatggcttttaaccatgtggtcgtgggttcgattgccacagacggcg 18344888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 150 - 223
Target Start/End: Complemental strand, 18582021 - 18581948
Alignment:
Q  150 agccgtcttagctcagctggtagagcgcatggcttttaaccatgtggtcgtgggttcgattcccacagacggcg 223  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  18582021 agccgtcttagctcagctggtagagcgcgtggcttttaaccacgtggtcgtgggttcgattcccacagacggcg 18581948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 149 - 224
Target Start/End: Complemental strand, 42681412 - 42681338
Alignment:
Q  149 cagccgtcttagctcagctggtagagcgcatggcttttaaccatgtggtcgtgggttcgattcccacagacggcgt 224  Q
    ||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||    
T  42681412 cagccgtcttagctcag-tggtagagcgcgtggcttttaaccacgtggtcgtgggttcgatccccacagacggcgt 42681338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 150 - 223
Target Start/End: Original strand, 31299701 - 31299773
Alignment:
Q  150 agccgtcttagctcagctggtagagcgcatggcttttaaccatgtggtcgtgggttcgattcccacagacggcg 223  Q
    ||||| |||||||||| ||||||||||| ||||||||||||| ||||||||||||||||| ||||||| |||||    
T  31299701 agccgacttagctcag-tggtagagcgcgtggcttttaaccacgtggtcgtgggttcgatccccacagtcggcg 31299773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 150 - 223
Target Start/End: Complemental strand, 42681267 - 42681195
Alignment:
Q  150 agccgtcttagctcagctggtagagcgcatggcttttaaccatgtggtcgtgggttcgattcccacagacggcg 223  Q
    ||||| |||||||||| ||||||||||| ||||||||||||| ||||||||||||||||| ||||||| |||||    
T  42681267 agccgacttagctcag-tggtagagcgcgtggcttttaaccacgtggtcgtgggttcgatccccacagtcggcg 42681195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 158 - 208
Target Start/End: Original strand, 9901996 - 9902046
Alignment:
Q  158 tagctcagctggtagagcgcatggcttttaaccatgtggtcgtgggttcga 208  Q
    |||||||| |||||||||||| |||| |||||| |||||||||||||||||    
T  9901996 tagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcga 9902046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 158 - 208
Target Start/End: Original strand, 21515998 - 21516048
Alignment:
Q  158 tagctcagctggtagagcgcatggcttttaaccatgtggtcgtgggttcga 208  Q
    |||||||| |||||||||||| |||| |||||| |||||||||||||||||    
T  21515998 tagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcga 21516048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 158 - 208
Target Start/End: Complemental strand, 28029783 - 28029733
Alignment:
Q  158 tagctcagctggtagagcgcatggcttttaaccatgtggtcgtgggttcga 208  Q
    |||||||| |||||||||||| |||| |||||| |||||||||||||||||    
T  28029783 tagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcga 28029733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 158 - 208
Target Start/End: Complemental strand, 36430658 - 36430608
Alignment:
Q  158 tagctcagctggtagagcgcatggcttttaaccatgtggtcgtgggttcga 208  Q
    |||||||| |||||||||||| |||| |||||| |||||||||||||||||    
T  36430658 tagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcga 36430608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 4e-30; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 150 - 225
Target Start/End: Complemental strand, 10050948 - 10050873
Alignment:
Q  150 agccgtcttagctcagctggtagagcgcatggcttttaaccatgtggtcgtgggttcgattcccacagacggcgtt 225  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  10050948 agccgtcttagctcagctggtagagcgcgtggcttttaaccacgtggtcgtgggttcgattcccacagacggcgtt 10050873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 150 - 223
Target Start/End: Complemental strand, 6685962 - 6685889
Alignment:
Q  150 agccgtcttagctcagctggtagagcgcatggcttttaaccatgtggtcgtgggttcgattcccacagacggcg 223  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  6685962 agccgtcttagctcagctggtagagcgcgtggcttttaaccacgtggtcgtgggttcgattcccacagacggcg 6685889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 154 - 219
Target Start/End: Original strand, 9246609 - 9246674
Alignment:
Q  154 gtcttagctcagctggtagagcgcatggcttttaaccatgtggtcgtgggttcgattcccacagac 219  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  9246609 gtcttagctcagctggtagagcgcgtggcttttaaccacgtggtcgtgggttcgattcccacagac 9246674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 150 - 223
Target Start/End: Complemental strand, 4195819 - 4195747
Alignment:
Q  150 agccgtcttagctcagctggtagagcgcatggcttttaaccatgtggtcgtgggttcgattcccacagacggcg 223  Q
    |||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||    
T  4195819 agccgtcttagctcag-tggtagagcgcgtggcttttaaccacgtggtcgtgggttcgatccccacagacggcg 4195747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 150 - 223
Target Start/End: Original strand, 34180901 - 34180973
Alignment:
Q  150 agccgtcttagctcagctggtagagcgcatggcttttaaccatgtggtcgtgggttcgattcccacagacggcg 223  Q
    ||||| |||||||||| ||||||||||| ||||||||||||| ||||||||||||||||| ||||||| |||||    
T  34180901 agccgacttagctcag-tggtagagcgcgtggcttttaaccacgtggtcgtgggttcgatccccacagtcggcg 34180973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 158 - 208
Target Start/End: Original strand, 3432382 - 3432432
Alignment:
Q  158 tagctcagctggtagagcgcatggcttttaaccatgtggtcgtgggttcga 208  Q
    |||||||| |||||||||||| |||| |||||| |||||||||||||||||    
T  3432382 tagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcga 3432432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 158 - 208
Target Start/End: Original strand, 4630401 - 4630451
Alignment:
Q  158 tagctcagctggtagagcgcatggcttttaaccatgtggtcgtgggttcga 208  Q
    |||||||| |||||||||||| |||| |||||| |||||||||||||||||    
T  4630401 tagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcga 4630451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 158 - 208
Target Start/End: Original strand, 16167781 - 16167831
Alignment:
Q  158 tagctcagctggtagagcgcatggcttttaaccatgtggtcgtgggttcga 208  Q
    |||||||| |||||||||||| |||| |||||| |||||||||||||||||    
T  16167781 tagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcga 16167831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 158 - 208
Target Start/End: Complemental strand, 35885823 - 35885773
Alignment:
Q  158 tagctcagctggtagagcgcatggcttttaaccatgtggtcgtgggttcga 208  Q
    |||||||| |||||||||||| |||| |||||| |||||||||||||||||    
T  35885823 tagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcga 35885773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 4e-30; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 154 - 225
Target Start/End: Original strand, 748590 - 748661
Alignment:
Q  154 gtcttagctcagctggtagagcgcatggcttttaaccatgtggtcgtgggttcgattcccacagacggcgtt 225  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  748590 gtcttagctcagctggtagagcgcatggcttttaaccatgtggtcgtgggtttgattcccacagacggcgtt 748661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 150 - 223
Target Start/End: Complemental strand, 1452460 - 1452387
Alignment:
Q  150 agccgtcttagctcagctggtagagcgcatggcttttaaccatgtggtcgtgggttcgattcccacagacggcg 223  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  1452460 agccgtcttagctcagctggtagagcgcgtggcttttaaccacgtggtcgtgggttcgattcccacagacggcg 1452387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 150 - 225
Target Start/End: Complemental strand, 53051541 - 53051467
Alignment:
Q  150 agccgtcttagctcagctggtagagcgcatggcttttaaccatgtggtcgtgggttcgattcccacagacggcgtt 225  Q
    |||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||    
T  53051541 agccgtcttagctcag-tggtagagcgcgtggcttttaaccacgtggtcgtgggttcgatccccacagacggcgtt 53051467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 151 - 223
Target Start/End: Complemental strand, 14066370 - 14066299
Alignment:
Q  151 gccgtcttagctcagctggtagagcgcatggcttttaaccatgtggtcgtgggttcgattcccacagacggcg 223  Q
    |||| |||||||||| ||||||||||| ||||||||||||| ||||||||||||||||| ||||||| |||||    
T  14066370 gccgacttagctcag-tggtagagcgcgtggcttttaaccacgtggtcgtgggttcgatccccacagtcggcg 14066299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 158 - 209
Target Start/End: Original strand, 32270455 - 32270506
Alignment:
Q  158 tagctcagctggtagagcgcatggcttttaaccatgtggtcgtgggttcgat 209  Q
    |||||||| |||||||||||| |||| |||||| ||||||||||||||||||    
T  32270455 tagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcgat 32270506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 158 - 208
Target Start/End: Complemental strand, 7328148 - 7328098
Alignment:
Q  158 tagctcagctggtagagcgcatggcttttaaccatgtggtcgtgggttcga 208  Q
    |||||||| |||||||||||| |||| |||||| |||||||||||||||||    
T  7328148 tagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcga 7328098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 158 - 208
Target Start/End: Original strand, 7984535 - 7984585
Alignment:
Q  158 tagctcagctggtagagcgcatggcttttaaccatgtggtcgtgggttcga 208  Q
    |||||||| |||||||||||| |||| |||||| |||||||||||||||||    
T  7984535 tagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcga 7984585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 158 - 208
Target Start/End: Complemental strand, 29276046 - 29275996
Alignment:
Q  158 tagctcagctggtagagcgcatggcttttaaccatgtggtcgtgggttcga 208  Q
    |||||||| |||||||||||| |||| |||||| |||||||||||||||||    
T  29276046 tagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcga 29275996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 158 - 208
Target Start/End: Complemental strand, 40818983 - 40818933
Alignment:
Q  158 tagctcagctggtagagcgcatggcttttaaccatgtggtcgtgggttcga 208  Q
    |||||||| |||||||||||| |||| |||||| |||||||||||||||||    
T  40818983 tagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcga 40818933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 158 - 208
Target Start/End: Original strand, 42243869 - 42243919
Alignment:
Q  158 tagctcagctggtagagcgcatggcttttaaccatgtggtcgtgggttcga 208  Q
    |||||||| |||||||||||| |||| |||||| |||||||||||||||||    
T  42243869 tagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcga 42243919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 4e-30; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 150 - 225
Target Start/End: Complemental strand, 395523 - 395448
Alignment:
Q  150 agccgtcttagctcagctggtagagcgcatggcttttaaccatgtggtcgtgggttcgattcccacagacggcgtt 225  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  395523 agccgtcttagctcagctggtagagcgcacggcttttaaccgtgtggtcgtgggttcgattcccacagacggcgtt 395448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 150 - 225
Target Start/End: Complemental strand, 28375764 - 28375690
Alignment:
Q  150 agccgtcttagctcagctggtagagcgcatggcttttaaccatgtggtcgtgggttcgattcccacagacggcgtt 225  Q
    ||||| |||||||||| ||||||||||| ||||||||||||| ||||||||||||||||| ||||||| |||||||    
T  28375764 agccgacttagctcag-tggtagagcgcgtggcttttaaccacgtggtcgtgggttcgatccccacagtcggcgtt 28375690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 151 - 215
Target Start/End: Complemental strand, 29529144 - 29529081
Alignment:
Q  151 gccgtcttagctcagctggtagagcgcatggcttttaaccatgtggtcgtgggttcgattcccac 215  Q
    |||| |||||||||| ||||||||||| ||||||||||||| ||||||||||||||||| |||||    
T  29529144 gccgacttagctcag-tggtagagcgcgtggcttttaaccacgtggtcgtgggttcgatccccac 29529081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 158 - 208
Target Start/End: Complemental strand, 31972708 - 31972658
Alignment:
Q  158 tagctcagctggtagagcgcatggcttttaaccatgtggtcgtgggttcga 208  Q
    |||||||| |||||||||||| |||| |||||| |||||||||||||||||    
T  31972708 tagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcga 31972658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 150 - 225
Target Start/End: Original strand, 41264117 - 41264191
Alignment:
Q  150 agccgtcttagctcagctggtagagcgcatggcttttaaccatgtggtcgtgggttcgattcccacagacggcgtt 225  Q
    ||||| |||||||||| ||||||||||| ||||||||||||| ||||||||||||||||| ||||||| |||||||    
T  41264117 agccgacttagctcag-tggtagagcgcgtggcttttaaccacgtggtcgtgggttcgatccccacagtcggcgtt 41264191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 158 - 208
Target Start/End: Complemental strand, 4362822 - 4362772
Alignment:
Q  158 tagctcagctggtagagcgcatggcttttaaccatgtggtcgtgggttcga 208  Q
    |||||||| |||||||||||| |||| |||||| |||||||||||||||||    
T  4362822 tagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcga 4362772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 158 - 208
Target Start/End: Original strand, 12132478 - 12132528
Alignment:
Q  158 tagctcagctggtagagcgcatggcttttaaccatgtggtcgtgggttcga 208  Q
    |||||||| |||||||||||| |||| |||||| |||||||||||||||||    
T  12132478 tagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcga 12132528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 158 - 208
Target Start/End: Original strand, 14694837 - 14694887
Alignment:
Q  158 tagctcagctggtagagcgcatggcttttaaccatgtggtcgtgggttcga 208  Q
    |||||||| |||||||||||| |||| |||||| |||||||||||||||||    
T  14694837 tagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcga 14694887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 158 - 208
Target Start/End: Complemental strand, 33332381 - 33332331
Alignment:
Q  158 tagctcagctggtagagcgcatggcttttaaccatgtggtcgtgggttcga 208  Q
    |||||||| |||||||||||| |||| |||||| |||||||||||||||||    
T  33332381 tagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcga 33332331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 151 - 216
Target Start/End: Original strand, 17955705 - 17955769
Alignment:
Q  151 gccgtcttagctcagctggtagagcgcatggcttttaaccatgtggtcgtgggttcgattcccaca 216  Q
    |||| |||||||||| ||||||||||| ||||||||||||| ||||||||||||| ||| ||||||    
T  17955705 gccgacttagctcag-tggtagagcgcgtggcttttaaccacgtggtcgtgggtttgatccccaca 17955769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 158 - 208
Target Start/End: Original strand, 5246077 - 5246127
Alignment:
Q  158 tagctcagctggtagagcgcatggcttttaaccatgtggtcgtgggttcga 208  Q
    |||||||| |||||||||||| |||| |||||| |||||||||||||||||    
T  5246077 tagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcga 5246127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 158 - 208
Target Start/End: Complemental strand, 43903944 - 43903894
Alignment:
Q  158 tagctcagctggtagagcgcatggcttttaaccatgtggtcgtgggttcga 208  Q
    |||||||| |||||||||||| |||| |||||| |||||||||||||||||    
T  43903944 tagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcga 43903894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University