View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3057_high_22 (Length: 238)
Name: NF3057_high_22
Description: NF3057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3057_high_22 |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 40460158 - 40459938
Alignment:
| Q |
1 |
catcctaaagaccttgcccccaagtaaatgtcgatttgtttccaccactacaatggtgtagtgtcgttatagcaggcattttcagaacacatttgtatta |
100 |
Q |
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| T |
40460158 |
catcctaaagaccttgcccccaagtaaatgtcgatttgtttccaccactacaatggtgtagtgtcgttatagcaggcattttcagaacacatttgtatta |
40460059 |
T |
|
| Q |
101 |
actagcttaccattgaacaaaagtgatttattaaatttctactatgctatagtgtctctgtttaacaacactagtgtttcagctgttgttgatcagtctg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40460058 |
actagcttaccattgaacaaaagtgatttattaaatttctactatgctatagtgtctctgtttaacaacactagtgtttcagctgttgttgatcagtctg |
40459959 |
T |
|
| Q |
201 |
ttgtgttggaagttatcccaat |
222 |
Q |
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||||||||||| |||||||||| |
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| T |
40459958 |
ttgtgttggaa-ttatcccaat |
40459938 |
T |
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