View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3057_high_24 (Length: 235)
Name: NF3057_high_24
Description: NF3057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3057_high_24 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 3931428 - 3931207
Alignment:
| Q |
1 |
tcctccacattacacaggatctatgcaatctgtatgtgactagtgtttaaaaaagataaaaggaacccaccacccaccactgcaggcgtttaacttaaaa |
100 |
Q |
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| T |
3931428 |
tcctccacattacacaggatctatgcaatctgtatgtgactagtgtttaaaaaagataaaaggaacccaccacccacccctgcaggcgtttaacataaaa |
3931329 |
T |
|
| Q |
101 |
a-gccattacattgcatgcataaataagtgttgcagttatgcaaacatcatacctaggttcgtttacatctcctttcagttgtacatgctgtcccctatc |
199 |
Q |
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| T |
3931328 |
aagccattacattgcatgcataaataagtgttgcggttatgcaaacatcatacctaggttcgtttacatctcctttcagttgtacatgctgtcccctatc |
3931229 |
T |
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| Q |
200 |
caacggtatgagttttacaatt |
221 |
Q |
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|||||||||||||||||||||| |
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| T |
3931228 |
caacggtatgagttttacaatt |
3931207 |
T |
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