View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3057_high_7 (Length: 463)
Name: NF3057_high_7
Description: NF3057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3057_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 195 - 459
Target Start/End: Original strand, 47258691 - 47258955
Alignment:
| Q |
195 |
atatgcatggccttaaatttaaattctaatcattgggatgtgacttttaaggaatatttttgtcaatcactttaaatgactttattttaatgaataaaat |
294 |
Q |
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| T |
47258691 |
atatgcatggccttaaatttaaattctaatcattgggatgtgacttgtaaggaatatttttgtcaatcactttaaatgactttattttaatgaataaaat |
47258790 |
T |
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| Q |
295 |
ggcttatctttactcacaattggaaaattgatcatgtataaaggcatttttgtttaagatattttcagagtgaaatacattttgttttattctgctaaat |
394 |
Q |
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| T |
47258791 |
ggtttatctttactcacaattggaaaattgatcatgtataaaggcatttttgtttaagatattttcagagtgaaatacattttgttttattctgctaaat |
47258890 |
T |
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| Q |
395 |
actcagcttctcttccctttcattcaatttgaggatatggaatggaattcatattcttctcactc |
459 |
Q |
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| T |
47258891 |
actcagcttctcttccctttcattcaatttgaggatatggaatgaaattcatattcttttcactc |
47258955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 17 - 136
Target Start/End: Original strand, 47258525 - 47258644
Alignment:
| Q |
17 |
taaacagtaatcgattggctataactaagagtatacgattgaatgaagtttgatacattaacatcagaacaaagttaaaagaataaaaaggaagctaaca |
116 |
Q |
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| T |
47258525 |
taaacagtaatcgattggctataactaagagtatacgattgaatgaagtttgatacattaacatcagaacaaagttaaaagaataaaaaggaagctaaca |
47258624 |
T |
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| Q |
117 |
tcagagaagtatgcaacaca |
136 |
Q |
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| T |
47258625 |
tcagagaagtatgcagcaca |
47258644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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