View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3057_low_10 (Length: 389)
Name: NF3057_low_10
Description: NF3057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3057_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 12 - 373
Target Start/End: Original strand, 3908463 - 3908828
Alignment:
| Q |
12 |
atgaatggaaactaacatacctgtcaagcaacgataggaaagaactgtttcaacatcacagtcagccatggttgaactaagaggtgtaacaaatgtaaag |
111 |
Q |
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| T |
3908463 |
atgaatggaaactaacatacctgtcaagcaacaataggaaagaactgtttcaacatcacagtcagccatggttgaactaagaggtgtaacaaatgtaaag |
3908562 |
T |
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| Q |
112 |
tgtgaaggaaattggtaaatgaagttgctaacattacacgcatannnnnnngagggaacatgtatatatacatgggaaaaagagggtagttattaattat |
211 |
Q |
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| T |
3908563 |
tgtgaaggaaattggtaaatgaagttgctaacataacacacatatttttttgagggaacatgtatatatacatgggaaatagagggtagttattaattat |
3908662 |
T |
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| Q |
212 |
ttaatttgcatagaatatatcaaggtaaaagttgggactataaattggcgtgggattggaaaaggcaaaggaaattgaacttatagc----ttcnnnnnn |
307 |
Q |
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| T |
3908663 |
ttaatttgcatagaatatatcaaggtaaaagttgggactataaattggcgtgggattagaaaaggcaaaggaaattgaacttatagcttttttttatttt |
3908762 |
T |
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| Q |
308 |
naaggaaaattgaacttatagcttgccgagtaagaaaagcactaacgaaaattaaatgtttggatg |
373 |
Q |
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| T |
3908763 |
gaaggaaaattgaacttatagtttgttgactaagaaaagtactaacgaaaattaaatgtttggatg |
3908828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 370
Target Start/End: Complemental strand, 9451371 - 9451316
Alignment:
| Q |
313 |
aaaattgaacttatagcttgccgagtaagaaaagcactaacgaaaattaaatgtttgg |
370 |
Q |
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| T |
9451371 |
aaaattgaactta--gcttgatgagtacgaaaagcactaacgaaaattaaatgcttgg |
9451316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 326 - 370
Target Start/End: Original strand, 3193127 - 3193171
Alignment:
| Q |
326 |
tagcttgccgagtaagaaaagcactaacgaaaattaaatgtttgg |
370 |
Q |
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| T |
3193127 |
tagcttgctgagtaggaaaagcactcatgaaaattaaatgtttgg |
3193171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 364
Target Start/End: Complemental strand, 21762151 - 21762102
Alignment:
| Q |
313 |
aaaattgaacttatagcttgccgagtaagaaaagcactaacgaaaattaaat |
364 |
Q |
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| T |
21762151 |
aaaattgaactta--gcttgatgagtaggaaaagcactaacgaaaattaaat |
21762102 |
T |
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