View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3057_low_11 (Length: 367)

Name: NF3057_low_11
Description: NF3057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3057_low_11
NF3057_low_11
[»] chr4 (3 HSPs)
chr4 (1-367)||(2886717-2887083)
chr4 (1-367)||(2897293-2897657)
chr4 (1-251)||(2877066-2877316)
[»] chr2 (4 HSPs)
chr2 (1-251)||(44223215-44223465)
chr2 (1-251)||(44234037-44234287)
chr2 (1-251)||(44211053-44211303)
chr2 (82-189)||(43457689-43457796)
[»] chr7 (5 HSPs)
chr7 (1-182)||(39589366-39589547)
chr7 (1-206)||(39564317-39564522)
chr7 (1-206)||(39575128-39575333)
chr7 (1-212)||(39353415-39353626)
chr7 (83-206)||(39547620-39547743)
[»] chr1 (3 HSPs)
chr1 (106-207)||(2149030-2149131)
chr1 (82-207)||(2160989-2161114)
chr1 (73-124)||(41687770-41687821)
[»] chr8 (1 HSPs)
chr8 (13-182)||(4501168-4501337)


Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 2887083 - 2886717
Alignment:
1 atatcattctgctcacaataaccagagattcgagcaaacgtttcttgttttttagggtacccagaaatttttatgctcccgtcaatataaccaccagttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
2887083 atatcattctgctcacaataaccagagattcgagcaaacgtttcttgttttttagggtacccagaaatttttatgctcccgtcaatataaccaccagttt 2886984  T
101 tcctaccagccaaaacatccattaaagtagttttaccagctccactaactcccattaaggcagtgagaacaccaggcctaaatgcaccactaacaccctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
2886983 tcctaccagccaaaacatccattaaagtagttttaccagctccactaactcccattaaggctgtgagaacaccaggcctaaatgcaccactaacaccctt 2886884  T
201 caaaagtactaatctatcctctactaccccttgaaccttcatttcctgccaattagaatctcaagagttaaggtccaaagttaactaaaaacattgtttg 300  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
2886883 caaaagtactaatctatcctctagtaccccttgaaccttcatttcctgccaattagaatctcaagagttaaggtccaaagttaactaaaaacattgtttg 2886784  T
301 aaaaccaaatcttaaattgtaataaacttttataatctcacttacctgtggcatgtcaacagaatat 367  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
2886783 aaaaccaaatcttaaattgtaaaaaacttttataatctcacttacctgtggcatgtcaacagaatat 2886717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 2897293 - 2897657
Alignment:
1 atatcattctgctcacaataaccagagattcgagcaaacgtttcttgttttttagggtacccagaaatttttatgctcccgtcaatataaccaccagttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| || |||||||||||| | || || ||||||||||| ||||    
2897293 atatcattctgctcacaataaccagagattcgagcaaacgtttcttgtcttttaaggtagcctgaaatttttatggtgccatcgatataaccaccggttt 2897392  T
101 tcctaccagccaaaacatccattaaagtagttttaccagctccactaactcccattaaggcagtgagaacaccaggcctaaatgcaccactaacaccctt 200  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||    
2897393 ttctaccagccaaaacatccattaaagtagttttaccagctccactaactcccattaatgctgtgagaacaccaggcctaaatgcaccactaacaccctt 2897492  T
201 caaaagtactaatctatcctctactaccccttgaaccttcatttcctgccaattagaatctcaagagttaaggtccaaagttaactaaaaacattgtttg 300  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| || |||||  ||||| ||||||||| ||||||||||| || ||||||||||    
2897493 caaaagtactaatctatcctctactacaccttgaaccttcatttcctgtcatttagatactcaatagttaaggttcaaagttaactgaacacattgtttg 2897592  T
301 aaaaccaaatcttaaattgtaataaacttttataatctcacttacctgtggcatgtcaacagaatat 367  Q
    |||| |||||||| |||| |||   ||||| | ||  | ||||||||||||||||||||| ||||||    
2897593 aaaatcaaatcttcaattataacttactttgaaaa--tgacttacctgtggcatgtcaactgaatat 2897657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 2877316 - 2877066
Alignment:
1 atatcattctgctcacaataaccagagattcgagcaaacgtttcttgttttttagggtacccagaaatttttatgctcccgtcaatataaccaccagttt 100  Q
    |||||||||||||||||||| |||||||||| |||||| |||||||| ||||||||||| |||||||||||||||||||| ||||||||||||| |||||    
2877316 atatcattctgctcacaatagccagagattctagcaaatgtttcttgctttttagggtaaccagaaatttttatgctcccatcaatataaccactagttt 2877217  T
101 tcctaccagccaaaacatccattaaagtagttttaccagctccactaactcccattaaggcagtgagaacaccaggcctaaatgcaccactaacaccctt 200  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||||| ||||| || || |||||||||||||| ||||||||||||||||| |||||    
2877216 tcctaccagccaatacatccatcaaagtagttttaccagctccactaacacccatcaaagctgtgagaacaccaggtctaaatgcaccactaactccctt 2877117  T
201 caaaagtactaatctatcctctactaccccttgaaccttcatttcctgcca 251  Q
    |||||| ||||  ||||||||||  || |||||| | ||||||||||||||    
2877116 caaaagcactagcctatcctctatcacaccttgatctttcatttcctgcca 2877066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 111; Significance: 6e-56; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 44223215 - 44223465
Alignment:
1 atatcattctgctcacaataaccagagattcgagcaaacgtttcttgttttttagggtacccagaaatttttatgctcccgtcaatataaccaccagttt 100  Q
    ||||||||||||||||| || ||||| |||| |||||| |||||||| |||||||||||||||||||  || |||   || |||||||| ||||| ||||    
44223215 atatcattctgctcacagtagccagaaattctagcaaatgtttcttgctttttagggtacccagaaaccttgatgtctccatcaatatatccacctgttt 44223314  T
101 tcctaccagccaaaacatccattaaagtagttttaccagctccactaactcccattaaggcagtgagaacaccaggcctaaatgcaccactaacaccctt 200  Q
    |||||||||||| ||||||||| | ||| ||||||||||||||||| || ||||| || || ||||||||||| ||||| ||||||||||||||||||||    
44223315 tcctaccagccagaacatccatcagagttgttttaccagctccacttacacccatcaaagctgtgagaacaccgggcctgaatgcaccactaacaccctt 44223414  T
201 caaaagtactaatctatcctctactaccccttgaaccttcatttcctgcca 251  Q
    |||||| |||||||| || |||   || |||||  ||||||||||||||||    
44223415 caaaagcactaatctgtcttctctaacaccttgctccttcatttcctgcca 44223465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 44234037 - 44234287
Alignment:
1 atatcattctgctcacaataaccagagattcgagcaaacgtttcttgttttttagggtacccagaaatttttatgctcccgtcaatataaccaccagttt 100  Q
    ||||||||||||||||| ||||| ||||||| |||||| |||||||| |||||||| ||||||||||  || |||   || |||||||| ||||| ||||    
44234037 atatcattctgctcacagtaaccggagattctagcaaatgtttcttgctttttaggatacccagaaaccttgatgtctccatcaatatatccacctgttt 44234136  T
101 tcctaccagccaaaacatccattaaagtagttttaccagctccactaactcccattaaggcagtgagaacaccaggcctaaatgcaccactaacaccctt 200  Q
    |||||||||||| ||||||||| | ||| ||||||||||||||||| || ||||| || || || || ||||||||||| ||||| ||||||||||||||    
44234137 tcctaccagccagaacatccatcagagttgttttaccagctccacttacacccatcaaagccgtaagtacaccaggcctgaatgcgccactaacaccctt 44234236  T
201 caaaagtactaatctatcctctactaccccttgaaccttcatttcctgcca 251  Q
    |||||| |||||||| ||||||   || |||||  ||||||||||||||||    
44234237 caaaagcactaatctgtcctctgtaacaccttgctccttcatttcctgcca 44234287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 44211053 - 44211303
Alignment:
1 atatcattctgctcacaataaccagagattcgagcaaacgtttcttgttttttagggtacccagaaatttttatgctcccgtcaatataaccaccagttt 100  Q
    ||||||||||| ||||| || ||||| |||| |||||| |||||||| |||||||||||||||||||  || |||   || |||||||| ||||| ||||    
44211053 atatcattctgttcacagtagccagatattctagcaaatgtttcttgctttttagggtacccagaaaccttgatgtctccatcaatatatccacctgttt 44211152  T
101 tcctaccagccaaaacatccattaaagtagttttaccagctccactaactcccattaaggcagtgagaacaccaggcctaaatgcaccactaacaccctt 200  Q
    |||||||||||| ||||||||| | ||| ||||||||||||||||| || ||||| || || ||||||||||| ||||| |||||||| |||||||||||    
44211153 tcctaccagccagaacatccatcagagttgttttaccagctccacttacacccatcaaagctgtgagaacaccgggcctgaatgcaccgctaacaccctt 44211252  T
201 caaaagtactaatctatcctctactaccccttgaaccttcatttcctgcca 251  Q
    |||||| |||| ||| ||||||   || |||||  ||||||||||||||||    
44211253 caaaagcactagtctgtcctctgtaacaccttgctccttcatttcctgcca 44211303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 82 - 189
Target Start/End: Original strand, 43457689 - 43457796
Alignment:
82 tcaatataaccaccagttttcctaccagccaaaacatccattaaagtagttttaccagctccactaactcccattaaggcagtgagaacaccaggcctaa 181  Q
    ||||| |||||||| || ||||| ||||| ||||||||||| ||||| || || ||||||||||||||||||||||| || || ||||| |||||||| |    
43457689 tcaatgtaaccacctgtcttccttccagctaaaacatccatcaaagttgtctttccagctccactaactcccattaaagccgttagaactccaggcctga 43457788  T
182 atgcacca 189  Q
    ||||||||    
43457789 atgcacca 43457796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 39589366 - 39589547
Alignment:
1 atatcattctgctcacaataaccagagattcgagcaaacgtttcttgttttttagggtacccagaaatttttatgctcccgtcaatataaccaccagttt 100  Q
    |||||||| |||||||| || ||||| ||||  ||||| |||||||| || ||||| || ||||||||| | ||| ||||  ||||||| ||||||||||    
39589366 atatcattttgctcacagtatccagaaattcttgcaaatgtttcttgcttcttaggatatccagaaattgtgatggtcccaccaatatatccaccagttt 39589465  T
101 tcctaccagccaaaacatccattaaagtagttttaccagctccactaactcccattaaggcagtgagaacaccaggcctaaa 182  Q
    | |||||||  |  |||||||  ||||||||||| ||||| ||  | || |||||||| |||||||||||||||||||||||    
39589466 ttctaccagaaagcacatccaacaaagtagtttttccagcacccgtgacgcccattaaagcagtgagaacaccaggcctaaa 39589547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 39564317 - 39564522
Alignment:
1 atatcattctgctcacaataaccagagattcgagcaaacgtttcttgttttttagggtacccagaaatttttatgctcccgtcaatataaccaccagttt 100  Q
    |||||||| |||||||| || ||||| ||||  ||||| |||||||| || || ||  | || |||||| | ||| ||||  ||||||| || || ||||    
39564317 atatcattttgctcacagtacccagaaattcttgcaaaggtttcttgcttctttggaaagccggaaattgtgatgttcccaccaatatatcctccggttt 39564416  T
101 tcctaccagccaaaacatccattaaagtagttttaccagctccactaactcccattaaggcagtgagaacaccaggcctaaatgcaccactaacaccctt 200  Q
    |||||||||  |  |||||||| | ||| ||||| ||||| ||  | || |||||||  ||||||||||||||||| || || || ||||| ||||||||    
39564417 tcctaccagaaagcacatccatcagagttgttttgccagcaccggtcacacccattagagcagtgagaacaccaggtctgaaagctccacttacaccctt 39564516  T
201 caaaag 206  Q
    ||||||    
39564517 caaaag 39564522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 39575128 - 39575333
Alignment:
1 atatcattctgctcacaataaccagagattcgagcaaacgtttcttgttttttagggtacccagaaatttttatgctcccgtcaatataaccaccagttt 100  Q
    |||||||| |||||||| || || || ||||  ||||| |||||||| ||||| || | ||| |||| | | ||| ||||   |||||| || ||| |||    
39575128 atatcattttgctcacagtatccggaaattcttgcaaaggtttcttgctttttgggatgcccggaaactgtgatgttcccactaatatatcccccacttt 39575227  T
101 tcctaccagccaaaacatccattaaagtagttttaccagctccactaactcccattaaggcagtgagaacaccaggcctaaatgcaccactaacaccctt 200  Q
    |||||||||| |  |||||||| ||||| ||||| ||||| ||| | || ||||| |  |||||||||||||| |||||||| || || || ||||| ||    
39575228 tcctaccagcaagtacatccatcaaagttgttttgccagcaccagtgacacccataagtgcagtgagaacacctggcctaaaagctccgctgacaccgtt 39575327  T
201 caaaag 206  Q
    ||||||    
39575328 caaaag 39575333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 39353626 - 39353415
Alignment:
1 atatcattctgctcacaataaccagagattcgagcaaacgtttcttgttttttagggtacccagaaatttttatgctcccgtcaatataaccaccagttt 100  Q
    |||||| | |||||||| || ||||| ||||  ||||| |||||||| ||||| || || || |||||| | ||| ||||  ||||||| ||||| ||||    
39353626 atatcagtttgctcacagtatccagaaattcttgcaaaggtttcttgcttttttggatagccggaaattgtgatgttcccaccaatatatccaccggttt 39353527  T
101 tcctaccagccaaaacatccattaaagtagttttaccagctccactaactcccattaaggcagtgagaacaccaggcctaaatgcaccactaacaccctt 200  Q
    | |||||||  |  |||||||||| ||| ||||| ||||| ||| | |  ||||| |  || ||||||||||| || || || || ||||| ||||||||    
39353526 ttctaccagaaagcacatccattagagttgtttttccagcaccagtgatgcccatcagagccgtgagaacacctggtctgaaagctccacttacaccctt 39353427  T
201 caaaagtactaa 212  Q
     ||||| |||||    
39353426 taaaagaactaa 39353415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 83 - 206
Target Start/End: Original strand, 39547620 - 39547743
Alignment:
83 caatataaccaccagttttcctaccagccaaaacatccattaaagtagttttaccagctccactaactcccattaaggcagtgagaacaccaggcctaaa 182  Q
    ||||||| ||||||||||| |||||||  |  |||||||| | ||| ||||| || || ||| | || ||||| |  ||||||||||||||||| || ||    
39547620 caatatatccaccagtttttctaccagaaagtacatccatcagagttgttttgcctgcaccagtcacacccatcagagcagtgagaacaccaggtctgaa 39547719  T
183 tgcaccactaacacccttcaaaag 206  Q
     || ||||| ||||||||||||||    
39547720 agctccacttacacccttcaaaag 39547743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 106 - 207
Target Start/End: Original strand, 2149030 - 2149131
Alignment:
106 ccagccaaaacatccattaaagtagttttaccagctccactaactcccattaaggcagtgagaacaccaggcctaaatgcaccactaacacccttcaaaa 205  Q
    ||||| |||||||||||||||||||| || ||||| ||||| || ||||| || || || || || ||||| ||||| ||||||||||||||||||||||    
2149030 ccagctaaaacatccattaaagtagtctttccagcaccacttacacccatcaaagctgttagtactccaggtctaaaagcaccactaacacccttcaaaa 2149129  T
206 gt 207  Q
    ||    
2149130 gt 2149131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 82 - 207
Target Start/End: Original strand, 2160989 - 2161114
Alignment:
82 tcaatataaccaccagttttcctaccagccaaaacatccattaaagtagttttaccagctccactaactcccattaaggcagtgagaacaccaggcctaa 181  Q
    |||||||| |||||||||||||| ||||| ||||||||||||| |||||| || || || ||||| || ||||| || ||||| || || ||||||||||    
2160989 tcaatatatccaccagttttccttccagctaaaacatccattagagtagtctttccggcaccacttacacccatcaaagcagttagtactccaggcctaa 2161088  T
182 atgcaccactaacacccttcaaaagt 207  Q
    | || ||| | | |||||||||||||    
2161089 aggcgccattgatacccttcaaaagt 2161114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 73 - 124
Target Start/End: Original strand, 41687770 - 41687821
Alignment:
73 atgctcccgtcaatataaccaccagttttcctaccagccaaaacatccatta 124  Q
    |||||||| |||||||||||||||||||| || ||||| | |||||||||||    
41687770 atgctcccttcaatataaccaccagtttttcttccagcaagaacatccatta 41687821  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 182
Target Start/End: Complemental strand, 4501337 - 4501168
Alignment:
13 tcacaataaccagagattcgagcaaacgtttcttgttttttagggtacccagaaatttttatgctcccgtcaatataaccaccagttttcctaccagcca 112  Q
    |||||||||||||| | ||  ||||| |||||||| || |||||||| ||||| ||| | |     || ||||| || |||||||| || || || || |    
4501337 tcacaataaccagaaactcttgcaaaggtttcttggttcttagggtatccagagattctaacatctccttcaatgtagccaccagtctttcttcctgcta 4501238  T
113 aaacatccattaaagtagttttaccagctccactaactcccattaaggcagtgagaacaccaggcctaaa 182  Q
    |||||||||||||||| || || || || ||||||||||||||||  ||||| ||||| |||||||||||    
4501237 aaacatccattaaagttgtcttcccggcaccactaactcccattagtgcagtaagaactccaggcctaaa 4501168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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