View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3057_low_12 (Length: 365)

Name: NF3057_low_12
Description: NF3057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3057_low_12
NF3057_low_12
[»] chr5 (3 HSPs)
chr5 (137-348)||(34708564-34708775)
chr5 (251-338)||(36580996-36581083)
chr5 (140-185)||(5406628-5406673)
[»] chr7 (1 HSPs)
chr7 (229-338)||(5060927-5061036)
[»] chr4 (1 HSPs)
chr4 (250-338)||(37576641-37576729)
[»] chr3 (4 HSPs)
chr3 (254-329)||(33148913-33148987)
chr3 (229-298)||(26997833-26997902)
chr3 (277-329)||(4969982-4970034)
chr3 (259-303)||(26998205-26998248)
[»] chr1 (1 HSPs)
chr1 (255-338)||(27039342-27039425)
[»] chr6 (1 HSPs)
chr6 (240-295)||(1826184-1826239)
[»] chr8 (1 HSPs)
chr8 (277-316)||(43996008-43996047)
[»] chr2 (1 HSPs)
chr2 (258-303)||(2831430-2831474)


Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 137 - 348
Target Start/End: Original strand, 34708564 - 34708775
Alignment:
Q  137 taacagaagacattgattgccagactgaatcatgtaagaaaattaagggattcaaattgttaatctaattgtgccgcataatgcaatatcactgtcttat 236  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  34708564 taacagaagacattgattgcaagactgaatcatgtaagaaaattaagggattcaaattgttaatctaattgtgccgcttaatgcaatatcactgtcttat 34708663  T
Q  237 agttgttgcccagtagccatgaaaaccaacgtgagttaattcacgttgggatttcaatgtgatttttgcagatttataacaagtgtgagttaacttacgc 336  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||    
T  34708664 agttgttgcccagtagccatgaaaaccaacgtgagttaattcacgttgggatttcaatgtgatttttgcagatttataactagtgtgagttaactcatgc 34708763  T
Q  337 agggataatatg 348  Q
    ||||||||||||    
T  34708764 agggataatatg 34708775  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 251 - 338
Target Start/End: Original strand, 36580996 - 36581083
Alignment:
Q  251 agccatgaaaaccaacgtgagttaattcacgttgggatttcaatgtgatttttgcagatttataacaagtgtgagttaacttacgcag 338  Q
    |||||||||||| || |||||||||||||||||||||||||||||| ||||||||| | ||||||| || ||||||||| | ||||||    
T  36580996 agccatgaaaactaaggtgagttaattcacgttgggatttcaatgtcatttttgcataattataactagcgtgagttaattcacgcag 36581083  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 140 - 185
Target Start/End: Complemental strand, 5406673 - 5406628
Alignment:
Q  140 cagaagacattgattgccagactgaatcatgtaagaaaattaaggg 185  Q
    ||||||||| ||||||| |||||||||||||||| |||||||||||    
T  5406673 cagaagacagtgattgcaagactgaatcatgtaaaaaaattaaggg 5406628  T

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Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 229 - 338
Target Start/End: Complemental strand, 5061036 - 5060927
Alignment:
Q  229 tgtcttatagttgttgcccagtagccatgaaaaccaacgtgagttaattcacgttgggatttcaatgtgatttttgcagatttataacaagtgtgagtta 328  Q
    ||||||||| |||||| ||| |  | ||||||| ||||||||||||| |||| |||| |||||||||||||||||||||| ||||||| |||||||||||    
T  5061036 tgtcttatatttgttgtccactgactatgaaaatcaacgtgagttaactcacattggaatttcaatgtgatttttgcagaattataactagtgtgagtta 5060937  T
Q  329 acttacgcag 338  Q
    ||| ||||||    
T  5060936 actcacgcag 5060927  T

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Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 250 - 338
Target Start/End: Complemental strand, 37576729 - 37576641
Alignment:
Q  250 tagccatgaaaaccaacgtgagttaattcacgttgggatttcaatgtgatttttgcagatttataacaagtgtgagttaacttacgcag 338  Q
    ||||||||||||||||| |||||||| |||||||| ||||||||||| ||||||||| | ||||||| || ||| ||||||| ||||||    
T  37576729 tagccatgaaaaccaacatgagttaactcacgttgagatttcaatgtcatttttgcataattataactagcgtgtgttaactcacgcag 37576641  T

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Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 254 - 329
Target Start/End: Complemental strand, 33148987 - 33148913
Alignment:
Q  254 catgaaaaccaacgtgagttaattcacgttgggatttcaatgtgatttttgcagatttataacaagtgtgagttaa 329  Q
    |||||||||||||||||||||| ||||||| |||||||||||| ||||||||||| ||||||| || |||| ||||    
T  33148987 catgaaaaccaacgtgagttaactcacgtt-ggatttcaatgtcatttttgcagaattataactagcgtgacttaa 33148913  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 229 - 298
Target Start/End: Complemental strand, 26997902 - 26997833
Alignment:
Q  229 tgtcttatagttgttgcccagtagccatgaaaaccaacgtgagttaattcacgttgggatttcaatgtga 298  Q
    ||||||||| || ||||| | |||||||||||||||| ||||||||| ||||||||| ||||||||||||    
T  26997902 tgtcttatatttattgcctactagccatgaaaaccaatgtgagttaactcacgttggaatttcaatgtga 26997833  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 329
Target Start/End: Complemental strand, 4970034 - 4969982
Alignment:
Q  277 tcacgttgggatttcaatgtgatttttgcagatttataacaagtgtgagttaa 329  Q
    |||||||||||||| ||||||||||||||||| ||||||| |  |||||||||    
T  4970034 tcacgttgggattttaatgtgatttttgcagaattataactaacgtgagttaa 4969982  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 303
Target Start/End: Original strand, 26998205 - 26998248
Alignment:
Q  259 aaaccaacgtgagttaattcacgttgggatttcaatgtgattttt 303  Q
    ||||||||||||||||| ||||||||| | |||||||||||||||    
T  26998205 aaaccaacgtgagttaactcacgttggta-ttcaatgtgattttt 26998248  T

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Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 255 - 338
Target Start/End: Complemental strand, 27039425 - 27039342
Alignment:
Q  255 atgaaaaccaacgtgagttaattcacgttgggatttcaatgtgatttttgcagatttataacaagtgtgagttaacttacgcag 338  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||||||  || ||||||   | ||||||||||| ||||||    
T  27039425 atgaaaaccaacgtgagttaactcacgttgggatttcaatgtaatttttgttgaattataatttgcgtgagttaactcacgcag 27039342  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 295
Target Start/End: Complemental strand, 1826239 - 1826184
Alignment:
Q  240 tgttgcccagtagccatgaaaaccaacgtgagttaattcacgttgggatttcaatg 295  Q
    |||||| || || ||||||||||||||||||||||| |||||||||||||| ||||    
T  1826239 tgttgctcactacccatgaaaaccaacgtgagttaactcacgttgggatttaaatg 1826184  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 277 - 316
Target Start/End: Complemental strand, 43996047 - 43996008
Alignment:
Q  277 tcacgttgggatttcaatgtgatttttgcagatttataac 316  Q
    |||||||| ||||||||||||||||||||||| |||||||    
T  43996047 tcacgttgagatttcaatgtgatttttgcagaattataac 43996008  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 303
Target Start/End: Original strand, 2831430 - 2831474
Alignment:
Q  258 aaaaccaacgtgagttaattcacgttgggatttcaatgtgattttt 303  Q
    |||| ||||||||||||| ||||||||||| |||||||||||||||    
T  2831430 aaaatcaacgtgagttaactcacgttggga-ttcaatgtgattttt 2831474  T

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