View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3057_low_14 (Length: 331)
Name: NF3057_low_14
Description: NF3057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3057_low_14 |
 | |
|
| [»] scaffold1029 (1 HSPs) |
| | |
|
| [»] scaffold1033 (1 HSPs) |
| | |
|
| [»] scaffold0889 (1 HSPs) |
| | |
|
| [»] scaffold0870 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold1029 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: scaffold1029
Description:
Target: scaffold1029; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 7 - 302
Target Start/End: Original strand, 3034 - 3328
Alignment:
| Q |
7 |
aatatccccagctataaacactgaatcaagtctgttttaatttactatcaaagcattaatttccagaatggtaagtattttaattgaagtacaaatatat |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3034 |
aatatccccagctataaacactgaatcaagtctgttttaatttactatcaaagcattaatttccagaatggtaagtattttaattgaagtacaaatatat |
3133 |
T |
|
| Q |
107 |
acagctgttcaaatttaaaatattttaatttcaaagtactgatcaatctacacttttacattttcaggatgctacatatgtcaaacaagctttgatattt |
206 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3134 |
acagctgttcaaatttaaaatatttta-tttcaaagtactgatcaatctgcacttttacattttcaggatgctacatatgtcaaacaagctttgatattt |
3232 |
T |
|
| Q |
207 |
aagcaagtttataagaaacttgttaaaatcgaagatccgatggaaagtttttatttgattgatattatccaaaggtttggcattgaacactacttt |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3233 |
aagcaagtttataagaaacttgttaaaatcgaagatccgatggaaagtttttatttgattgatattatccaaaggtttggcattgaacactacttt |
3328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1033 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: scaffold1033
Description:
Target: scaffold1033; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 7 - 244
Target Start/End: Original strand, 3034 - 3270
Alignment:
| Q |
7 |
aatatccccagctataaacactgaatcaagtctgttttaatttactatcaaagcattaatttccagaatggtaagtattttaattgaagtacaaatatat |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3034 |
aatatccccagctataaacactgaatcaagtctgttttaatttactatcaaagcattaatttccagaatggtaagtattttaattgaagtacaaatatat |
3133 |
T |
|
| Q |
107 |
acagctgttcaaatttaaaatattttaatttcaaagtactgatcaatctacacttttacattttcaggatgctacatatgtcaaacaagctttgatattt |
206 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3134 |
acagctgttcaaatttaaaatatttt-atttcaaagtactgatcaatctgcacttttacattttcaggatgctacatatgtcaaacaagctttgatattt |
3232 |
T |
|
| Q |
207 |
aagcaagtttataagaaacttgttaaaatcgaagatcc |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3233 |
aagcaagtttataagaaacttgttaaaatcgaagatcc |
3270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 7 - 320
Target Start/End: Complemental strand, 28580474 - 28580163
Alignment:
| Q |
7 |
aatatccccagctataaacactgaatcaagtctgttttaatttactatcaaagcattaatttccagaatggtaagtattttaattgaagtacaaatatat |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28580474 |
aatatccccagctataaacactgaatcaagtctgttttatt-----atcaaagcattaatttccagaatggtaagtattttaattgaagtacaaatatat |
28580380 |
T |
|
| Q |
107 |
acagctgttc-aaatttaaaatat--tttaatttcaaagtactgatcaatctacacttttacattttcaggatgctacatatgtcaaacaagctttgata |
203 |
Q |
| |
|
||| ||||| ||||||| ||||| ||| ||| ||| || ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
28580379 |
acaattgttctaaatttagaatatctttttattgcaatgttctgatcaatctacacttttacattttcaggacgttacatatgtcaaacaagctttgata |
28580280 |
T |
|
| Q |
204 |
tttaagcaagtttataagaaacttgttaaaatcgaagatccgatggaaagtttttatttgattgatattatccaaaggtttggcattgaacactactttg |
303 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28580279 |
ttcaagcaagtttataagaaacttgttaaaatcgaagatccgatggaaagtttttatttgattgatattatccaaaggtttggcattgaacactacttta |
28580180 |
T |
|
| Q |
304 |
ctgaggagatcaaagtg |
320 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
28580179 |
ccgaggagatcaaagtg |
28580163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 7 - 320
Target Start/End: Complemental strand, 26316478 - 26316168
Alignment:
| Q |
7 |
aatatccccagctataaacactgaatcaagtctgttttaatttactatcaaagcattaatttccagaatggtaagtattttaattgaagtacaaatatat |
106 |
Q |
| |
|
||||||| || | |||||||||||||||||| ||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
26316478 |
aatatcctcaaccataaacactgaatcaagtttgtttta-----ctatcaaatcattaatttatagaatggtaagtattttaattgaagtacaaatatat |
26316384 |
T |
|
| Q |
107 |
acagctgttcaa-atttaaaatat-tttaatttcaaagtactgatcaatctacacttttacattttcaggatgctacatatgtcaaacaagctttgatat |
204 |
Q |
| |
|
| || ||||| | ||||| ||||| ||| ||||||| || || |||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
26316383 |
aaagttgttctagatttacaatatattttatttcaatgttctcatcattctgcacttttacattttcaggatgttacatatgtcaaacaagctttgatat |
26316284 |
T |
|
| Q |
205 |
ttaagcaagtttataagaaacttgttaaaatcgaagatccgatggaaagtttttatttgattgatattatccaaaggtttggcattgaacactactttgc |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||| ||||||||| || ||||||||||||||||| |
|
|
| T |
26316283 |
ttaagcaagtttataagaaacttgttaaaatcgaatatccgatggagagtttttatttgatcgatatcatccaaaggcttaacattgaacactactttgt |
26316184 |
T |
|
| Q |
305 |
tgaggagatcaaagtg |
320 |
Q |
| |
|
||| |||||||||||| |
|
|
| T |
26316183 |
tgaagagatcaaagtg |
26316168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 10 - 320
Target Start/End: Complemental strand, 28575422 - 28575110
Alignment:
| Q |
10 |
atccccagctataaacactgaatcaagtctgttttaatttactatcaaagcattaatttccagaatggtaagtattttaattgaagtacaaatatataca |
109 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
28575422 |
atccccagctataaacaccgaatcaagtctgttttatt-----atcaaagcattaatttctagaatggtaagtattttaactgaagtacaaatatataca |
28575328 |
T |
|
| Q |
110 |
gctgttc-aaattta------aaatattttaatttcaaagtactgatcaatctacacttttacattttcaggatgctacatatgtcaaacaagctttgat |
202 |
Q |
| |
|
| | ||| ||| ||| | ||| || ||||||| || ||||||||||| |||||| || ||||||||||| ||||||||| || ||||||||||| |
|
|
| T |
28575327 |
gttattctaaacttagttacaacatagctttatttcaatgttctgatcaatctgcactttgactttttcaggatgttacatatgttaagcaagctttgat |
28575228 |
T |
|
| Q |
203 |
atttaagcaagtttataagaaacttgttaaaatcgaagatccgatggaaagtttttatttgattgatattatccaaaggtttggcattgaacactacttt |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||| |||||||||||||||||||||||||| ||| |
|
|
| T |
28575227 |
atttaagcaagtttataagaaacttgttaaaatcgaagattcgatggagagtttttatttgatcgatatcatccaaaggtttggcattgaacactatttt |
28575128 |
T |
|
| Q |
303 |
gctgaggagatcaaagtg |
320 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
28575127 |
gctgaggagatcaaagtg |
28575110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 14 - 320
Target Start/End: Complemental strand, 28586611 - 28586320
Alignment:
| Q |
14 |
ccagctataaacactgaatcaagtctgttttaatttactatcaaagcattaatttccagaatggtaagtattttaattgaagtacaaatatatacagctg |
113 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||| | ||| |
|
|
| T |
28586611 |
ccagttataaacactgaatcaagtctgtttta-----ctatcaaagcattaatttccagaatggtaagtaatttaattggagtacagttgtat------- |
28586524 |
T |
|
| Q |
114 |
ttcaaatttaaaatattttaatttcaaagtactgatcaatctacacttttacattttcaggatgctacatatgtcaaacaagctttgatatttaagcaag |
213 |
Q |
| |
|
|||| || |||||| ||||||| | ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
28586523 |
--caaaga-aatgtatttttatttcaatattctgatcaatctgcacttttacattttcaggatgttacatatgtcaaacaagctttgatatttaagcaag |
28586427 |
T |
|
| Q |
214 |
tttataagaaacttgttaaaatcgaagatccgatggaaagtttttatttgattgatattatccaaaggtttggcattgaacactactttgctgaggagat |
313 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
28586426 |
tttataagaaacttgttaaaattgaagatccgatggaaagtttttatttgatcgatattatccaaaggtttggcattgaacactattttgctgaggagat |
28586327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 35 - 320
Target Start/End: Complemental strand, 28568566 - 28568270
Alignment:
| Q |
35 |
agtctgttttaatttactatcaaagcattaatttccagaatggtaagtattttaattgaagtacaaatatatacagctgttc-aaattta---------- |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||| ||||||| |
|
|
| T |
28568566 |
agtctgttttaatttactatcaaagcattaatttctagaatggtaagtattttaattgaagtacgaatatatacagctattctaaatttagttacaacat |
28568467 |
T |
|
| Q |
124 |
aaatattttaatttcaaagtactgatcaatctacacttttacattttcaggatgctacatatgtcaaacaagctttgatatttaagcaagtttataagaa |
223 |
Q |
| |
|
| ||| || ||||||| | ||||||||||| |||| ||||| ||| |||||| | |||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
28568466 |
atatagctttatttcaatattctgatcaatctgcactcttacaattttaggatgttgtatatgtcaaacaagctttaatatttaagcaagtttataagaa |
28568367 |
T |
|
| Q |
224 |
acttgttaaaatcgaagatccgatggaaagtttttatttgattgatattatccaaaggtttggcattgaacactactttgctgaggagatcaaagtg |
320 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||| ||||| ||||||||||| || |||||| |
|
|
| T |
28568366 |
acttgttaaaatcgaagatccgatggagagtttttatttgatggatattatccaaaggtttggtattgagcactattttgctgaggaaataaaagtg |
28568270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 163 - 320
Target Start/End: Complemental strand, 20618671 - 20618514
Alignment:
| Q |
163 |
tacattttcaggatgctacatatgtcaaacaagctttgatatttaagcaagtttataagaaacttgttaaaatcgaagatccgatggaaagtttttattt |
262 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||||| | |||||||||| | ||||||||||||| | |||||||| | || | |||| |||| |
|
|
| T |
20618671 |
tacattttcaggatgctatttatgtcaagcaagctttgatgtgtaagcaagttcacaagaaacttgttactagtgaagatccaactgagaattttcattt |
20618572 |
T |
|
| Q |
263 |
gattgatattatccaaaggtttggcattgaacactactttgctgaggagatcaaagtg |
320 |
Q |
| |
|
|||||| || ||||||||| |||| |||||||||||||||| |||||| ||||||||| |
|
|
| T |
20618571 |
gattgacatcatccaaaggcttggtattgaacactactttgttgaggaaatcaaagtg |
20618514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 7 - 318
Target Start/End: Complemental strand, 24072094 - 24071793
Alignment:
| Q |
7 |
aatatccccagctataaacactgaatcaagtctgttttaatttactatcaaagcattaatttccagaatggtaagtattttaattgaagtacaaatatat |
106 |
Q |
| |
|
|||||| ||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
24072094 |
aatatctccaactataaacattgaatcaagtctgtttta-----ctatcaaagcattaatttccagaatggtaagtattttaataga----------tat |
24072010 |
T |
|
| Q |
107 |
acagctgttca-aatttaaaatat---ttta-atttcaaagtactgatcaatctacacttttacattttcaggatgctacatatgtcaaacaagctttga |
201 |
Q |
| |
|
||| ||||| |||||| ||||| || | |||| || || ||||||||| | ||||||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
24072009 |
acatatgttctgaatttacaatatatattcatattttaatgttctgatcaatatgcacttttacattttcaggatgttacttatgtcaaacaagctttga |
24071910 |
T |
|
| Q |
202 |
tatttaagcaagtttataagaaacttgttaaaatcgaagatccgatggaaagtttttatttgattgatattatccaaaggtttggcattgaacactactt |
301 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||| ||||| ||||||||||||||| |
|
|
| T |
24071909 |
tatttaagcaagtttatgagaaacttgttaaaatcgaagatccgatggagtgtttttatttgatcgatatcatccaaaagtttgacattgaacactactt |
24071810 |
T |
|
| Q |
302 |
tgctgaggagatcaaag |
318 |
Q |
| |
|
|| ||| |||||||||| |
|
|
| T |
24071809 |
tgttgacgagatcaaag |
24071793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0889 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: scaffold0889
Description:
Target: scaffold0889; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 71 - 310
Target Start/End: Original strand, 4358 - 4605
Alignment:
| Q |
71 |
agaatggtaagtattttaattgaagtacaaatatatacagctgttc-aaattta------aaatatttt---aatttcaaagtactgatcaatctacact |
160 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||||| | ||| ||||||| | ||| ||| |||||||| || ||||||||| |||| |
|
|
| T |
4358 |
agaatggtaagtattttaattgaaataccaatatatacagttattctaaatttatttacaacatagttttataatttcaatgttctgatcaatg--cact |
4455 |
T |
|
| Q |
161 |
tttacattttcaggatgctacatatgtcaaacaagctttgatatttaagcaagtttataagaaacttgttaaaatcgaagatccgatggaaagtttttat |
260 |
Q |
| |
|
|||||||||| |||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
4456 |
tttacatttttaggatgttttatatgtcaaacaagctttgatatttaagaaagtttataagaaacttgttaaaatcgaagatcccatggagagtttttat |
4555 |
T |
|
| Q |
261 |
ttgattgatattatccaaaggtttggcattgaacactactttgctgagga |
310 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
4556 |
ttgatcgatattatccaaaggtttggtattgaacactattttgctgagga |
4605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0870 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: scaffold0870
Description:
Target: scaffold0870; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 71 - 310
Target Start/End: Original strand, 4562 - 4809
Alignment:
| Q |
71 |
agaatggtaagtattttaattgaagtacaaatatatacagctgttc-aaattta------aaatatttt---aatttcaaagtactgatcaatctacact |
160 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||||| | ||| ||||||| | ||| ||| |||||||| || ||||||||| |||| |
|
|
| T |
4562 |
agaatggtaagtattttaattgaaataccaatatatacagttattctaaatttatttacaacatagttttataatttcaatgttctgatcaatg--cact |
4659 |
T |
|
| Q |
161 |
tttacattttcaggatgctacatatgtcaaacaagctttgatatttaagcaagtttataagaaacttgttaaaatcgaagatccgatggaaagtttttat |
260 |
Q |
| |
|
|||||||||| |||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
4660 |
tttacatttttaggatgttttatatgtcaaacaagctttgatatttaagaaagtttataagaaacttgttaaaatcgaagatcccatggagagtttttat |
4759 |
T |
|
| Q |
261 |
ttgattgatattatccaaaggtttggcattgaacactactttgctgagga |
310 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
4760 |
ttgatcgatattatccaaaggtttggtattgaacactattttgctgagga |
4809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 240 - 313
Target Start/End: Original strand, 2600685 - 2600758
Alignment:
| Q |
240 |
gatccgatggaaagtttttatttgattgatattatccaaaggtttggcattgaacactactttgctgaggagat |
313 |
Q |
| |
|
||||||||| ||||||| | ||||||| |||||||||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
2600685 |
gatccgatgaaaagtttgtgcatgattgacattatccaaaggcttggcattgaacatcactttgctgaggagat |
2600758 |
T |
|
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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 83
Target Start/End: Original strand, 34812926 - 34812997
Alignment:
| Q |
7 |
aatatccccagctataaacactgaatcaagtctgttttaatttactatcaaagcattaatttccagaatggtaagta |
83 |
Q |
| |
|
|||||| ||| |||||||||| ||||||||||||||||| | |||||||||||||||| ||||||||| |||| |
|
|
| T |
34812926 |
aatatctccacctataaacaccgaatcaagtctgttttatt-----atcaaagcattaattttcagaatggttagta |
34812997 |
T |
|
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