View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3057_low_16 (Length: 289)
Name: NF3057_low_16
Description: NF3057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3057_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 19 - 279
Target Start/End: Original strand, 44631044 - 44631304
Alignment:
| Q |
19 |
agaggtttctaggatttgtattggcatgaaatatcgatctttctgttgttgaggactatgtcgtgacgtgttcgatatacttttagtgtttattttacaa |
118 |
Q |
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| T |
44631044 |
agaggtttctaggatttgtattggcatgaaatatcgatctttctgttgttgaggactatgtcgtgacgtgttcgatatacttttagtgtttattttacaa |
44631143 |
T |
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| Q |
119 |
ctagagtgtgtccaagaattggaggttaccaggtttccgtgaagacttctgcctgtatgtggcttgtatataaatgtttggtcgaaatcgtttgaatttc |
218 |
Q |
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| T |
44631144 |
ctagagtgtgtccaagaattggaggttaccaggtttccgtgaagacttctgcctatatgtggcttgtatataaatgtttggtcgaaatcgtttgaatttc |
44631243 |
T |
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| Q |
219 |
ttgcatgatataattctcatactcaaactttgtatcctgtatcttgttgagttgatgatgt |
279 |
Q |
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| T |
44631244 |
ttgcatgatataattctcatactcaaactttgtatcctgtatcttgttgagttgatgatgt |
44631304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 88 - 224
Target Start/End: Complemental strand, 44637731 - 44637595
Alignment:
| Q |
88 |
gttcgatatacttttagtgtttattttacaactagagtgtgtccaagaattggaggttaccaggtttccgtgaagacttctgcctgtatgtggcttgtat |
187 |
Q |
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| T |
44637731 |
gttcgatatgtttttattgtttattataccattggaatgtgtccaagaattggaggttacaaggattccatgaagacttctgtctatacgtagctcgtat |
44637632 |
T |
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| Q |
188 |
ataaatgtttggtcgaaatcgtttgaatttcttgcat |
224 |
Q |
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| T |
44637631 |
accagtgtttggtcgaaatcatttgaatttcttgcat |
44637595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 116
Target Start/End: Original strand, 44652531 - 44652629
Alignment:
| Q |
19 |
agaggtttctaggatttgtattggcatgaaatatcgatctttctgttgttgaggactatgtcgtgacgtg-ttcgatatacttttagtgtttattttac |
116 |
Q |
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| T |
44652531 |
agaggtttctaacatttttattggcatgaaaatttgatttctctcttgttgaggactatgtcgtgatatgtttcgatatatttgtactgtttgttttac |
44652629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 211
Target Start/End: Original strand, 44691419 - 44691453
Alignment:
| Q |
177 |
gtggcttgtatataaatgtttggtcgaaatcgttt |
211 |
Q |
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| T |
44691419 |
gtggcttgtatataaatgtttggtagaaatcgttt |
44691453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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